Extension of the NOX::Thyra::Group to LOCA. More...

#include <LOCA_Thyra_Group.H>

Inheritance diagram for LOCA::Thyra::Group:

Collaboration diagram for LOCA::Thyra::Group:

Public Member Functions
	Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, const NOX::Thyra::Vector &initial_guess, const Teuchos::RCP< ::Thyra::ModelEvaluator< double > > &model, const LOCA::ParameterVector &p, int p_index, bool implement_dfdp=false, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &weight_vector=Teuchos::null, const bool set_transient_in_args=true)
	Constructor (internally constructs nox group)

	Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, const NOX::Thyra::Group &nox_group, const LOCA::ParameterVector &p, const std::vector< int > &p_index, bool implement_dfdp=false, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &weight_vector=Teuchos::null, const bool set_transient_in_args=true)
	Constructor for Householder continuation where parameters are in separate param vectors.

	Group (const Group &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor. If type is DeepCopy, takes ownership of valid shared Jacobian.

virtual	~Group ()
	Destructor.

virtual Group &	operator= (const Group &source)
	Assignment operator.

void	setSaveDataStrategy (const Teuchos::RCP< LOCA::Thyra::SaveDataStrategy > &s)
	Set strategy object for saving continuation data.

Overloaded NOX::Thyra::Group methods.
virtual NOX::Abstract::Group &	operator= (const NOX::Abstract::Group &source)
	Assignment operator.

virtual NOX::Abstract::Group &	operator= (const NOX::Thyra::Group &source)
	Assignment operator.

virtual Teuchos::RCP < NOX::Abstract::Group >	clone (NOX::CopyType type=NOX::DeepCopy) const
	Cloning function.

virtual NOX::Abstract::Group::ReturnType	computeF ()
	Overloaded computeF()

virtual NOX::Abstract::Group::ReturnType	computeJacobian ()
	Overloaded computeJacobian()

Implementation of LOCA::MultiContinuation::AbstractGroup virtual methods.
virtual void	copy (const NOX::Abstract::Group &source)
	Copy.

virtual void	setParams (const ParameterVector &p)
	Set the parameters.

virtual void	setParam (int paramID, double val)
	Set parameter indexed by paramID.

virtual void	setParam (std::string paramID, double val)
	Set parameter indexed by paramID.

const LOCA::ParameterVector &	getParams () const
	Return a const reference to the ParameterVector owned by the group.

virtual double	getParam (int paramID) const
	Return copy of parameter indexed by paramID.

virtual double	getParam (std::string paramID) const
	Return copy of parameter indexed by paramID.

virtual NOX::Abstract::Group::ReturnType	computeDfDpMulti (const std::vector< int > &paramIDs, NOX::Abstract::MultiVector &dfdp, bool isValidF)

virtual void	preProcessContinuationStep (LOCA::Abstract::Iterator::StepStatus stepStatus)
	Perform any preprocessing before a continuation step starts.

virtual void	postProcessContinuationStep (LOCA::Abstract::Iterator::StepStatus stepStatus)
	Perform any postprocessing after a continuation step finishes.

virtual void	projectToDraw (const NOX::Abstract::Vector &x, double *px) const
	Projects solution to a few scalars for multiparameter continuation.

virtual int	projectToDrawDimension () const
	Returns the dimension of the project to draw array.

virtual double	computeScaledDotProduct (const NOX::Abstract::Vector &a, const NOX::Abstract::Vector &b) const
	Compute a scaled dot product. More...

virtual void	printSolution (const double conParam) const
	Call the user interface print() routine, solution vector.

virtual void	printSolution (const NOX::Abstract::Vector &x, const double conParam) const
	Call the user interface print() routine, any vector.

virtual void	scaleVector (NOX::Abstract::Vector &x) const
	Scales a vector using scaling vector. More...

Implementation of LOCA::TimeDependent::AbstractGroup virtual methods.
virtual NOX::Abstract::Group::ReturnType	computeShiftedMatrix (double alpha, double beta)
	Compute the shifted matrix.

virtual NOX::Abstract::Group::ReturnType	applyShiftedMatrix (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Multiply the shifted matrix by a vector.

virtual NOX::Abstract::Group::ReturnType	applyShiftedMatrixMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	Multiply the shifted matrix by a multi-vector.

virtual NOX::Abstract::Group::ReturnType	applyShiftedMatrixInverseMultiVector (Teuchos::ParameterList &params, const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	Apply the inverse of the shifted matrix by a multi-vector, as needed by the shift-and-invert and generalized Cayley transformations.

Public Member Functions inherited from NOX::Thyra::Group
	Group (const NOX::Thyra::Vector &initialGuess, const Teuchos::RCP< const ::Thyra::ModelEvaluator< double > > &model, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &weightVector=Teuchos::null, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &rightWeightVector=Teuchos::null, const Teuchos::RCP<::Thyra::VectorBase< double > > &inv_rightWeightVector=Teuchos::null, const bool rightScalingFirst=false)
	The default constructor that uses the linear solver from the ModelEvaluator. More...

	Group (const NOX::Thyra::Vector &initialGuess, const Teuchos::RCP< const ::Thyra::ModelEvaluator< double > > &model, const Teuchos::RCP< ::Thyra::LinearOpBase< double > > &linearOp, const Teuchos::RCP< const ::Thyra::LinearOpWithSolveFactoryBase< double > > &lowsFactory, const Teuchos::RCP< ::Thyra::PreconditionerBase< double > > &precOp, const Teuchos::RCP< ::Thyra::PreconditionerFactoryBase< double > > &precFactory, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &weightVector=Teuchos::null, const Teuchos::RCP< const ::Thyra::VectorBase< double > > &rightWeightVector=Teuchos::null, const Teuchos::RCP<::Thyra::VectorBase< double > > &inv_rightWeightVector=Teuchos::null, const bool rightScalingFirst=false, const bool updatePreconditioner=true, const bool jacobianIsEvaluated=false)
	Power user constructor that takes explicit linear solver objects to handle different combinations. More...

	Group (const NOX::Thyra::Group &source, NOX::CopyType type=DeepCopy)
	Copy constructor.

	~Group ()
	Destructor.

NOX::Abstract::Group &	operator= (const NOX::Abstract::Group &source)
	Copies the source group into this group. More...

NOX::Abstract::Group &	operator= (const NOX::Thyra::Group &source)

Teuchos::RCP< const ::Thyra::VectorBase< double > >	get_current_x () const

Teuchos::RCP < ::Thyra::LinearOpBase < double > >	getNonconstJacobianOperator ()

Teuchos::RCP< const ::Thyra::LinearOpBase< double > >	getJacobianOperator () const

Teuchos::RCP< const ::Thyra::LinearOpBase< double > >	getScaledJacobianOperator () const

void	unscaleJacobianOperator () const

Teuchos::RCP < ::Thyra::LinearOpWithSolveBase < double > >	getNonconstJacobian ()

Teuchos::RCP< const ::Thyra::LinearOpWithSolveBase < double > >	getJacobian () const

Teuchos::RCP < ::Thyra::PreconditionerBase < double > >	getNonconstPreconditioner ()

Teuchos::RCP< const ::Thyra::PreconditionerBase < double > >	getPreconditioner () const

void	setJacobianOperator (const Teuchos::RCP<::Thyra::LinearOpBase< double >> &op)
	Dangerous power user function for LOCA Householder bordered algorithm.

void	setPreconditionerMatrix (const Teuchos::RCP< const ::Thyra::DefaultLinearOpSource< double >> &op)
	Dangerous power user function for LOCA Householder bordered algorithm. This is the Matrix M that is used to initialize a stratimikos preconditioner. NOTE: this sets the losb_ object used to update prec_!

virtual void	logLastLinearSolveStats (NOX::SolverStats &stats) const
	Adds statistics from last linear solve to the SovlerStats object.

void	print () const
	Print out the group.

Teuchos::RCP< const ::Thyra::ModelEvaluator < double > >	getModel () const

void	enablePseudoTransientTerms (const Teuchos::RCP< const ::Thyra::VectorBase< double >> &x_dot, const double alpha, const double beta, const double t)
	Set the transient terms on the Group and use them in the underlying evalModelImpl() calls. More...

void	disablePseudoTransientTerms ()
	Disable the pseudo traansient terms in the underlying evalModel() calls. Sets x_dot, alpha, beta and t back to steady state values.

bool	usingPseudoTransientTerms () const
	Check for whether the pseudo transient support is enabled for residual and Jacobian evaluations.

void	setBasePoint (const ::Thyra::ModelEvaluatorBase::InArgs< double > &base_point_params)

void	unsetBasePoint ()
	Unset the base point parameters so that they are not used internally.

bool	usingBasePoint () const
	Returns true if a base point has been set.

Teuchos::RCP< const ::Thyra::LinearOpWithSolveFactoryBase < double > >	getLinearOpWithSolveFactory () const
	Returns the thyra linear solver factory.

Teuchos::RCP <::Thyra::PreconditionerFactoryBase < double > >	getPreconditionerFactory () const
	Returns the thyra preconditioner factory.

void	takeControlOfPreconditionerUpdates (const Teuchos::RCP< ::Thyra::PreconditionerBase< double >> &prec)
	User will take control of updating an already registered preconditioner. Typically used with NOX::ObserverReusePreconditioner observer.

void	setX (const NOX::Abstract::Vector &y)
	Set the solution vector x to y. More...

void	setX (const NOX::Thyra::Vector &y)
	See above.

void	computeX (const NOX::Abstract::Group &grp, const NOX::Abstract::Vector &d, double step)
	Compute x = grp.x + step * d. More...

void	computeX (const NOX::Thyra::Group &grp, const NOX::Thyra::Vector &d, double step)
	See above.

NOX::Abstract::Group::ReturnType	computeF ()
	Compute and store F(x). More...

NOX::Abstract::Group::ReturnType	computeJacobian ()
	Compute and store Jacobian. More...

NOX::Abstract::Group::ReturnType	computeGradient ()
	Compute and store gradient. More...

NOX::Abstract::Group::ReturnType	computeNewton (Teuchos::ParameterList &params)
	Compute the Newton direction, using parameters for the linear solve. More...

NOX::Abstract::Group::ReturnType	applyJacobian (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Applies Jacobian to the given input vector and puts the answer in the result. More...

NOX::Abstract::Group::ReturnType	applyJacobian (const NOX::Thyra::Vector &input, NOX::Thyra::Vector &result) const

NOX::Abstract::Group::ReturnType	applyJacobianMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	applyJacobian for multiple right-hand sides More...

NOX::Abstract::Group::ReturnType	applyJacobianTranspose (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Applies Jacobian-Transpose to the given input vector and puts the answer in the result. More...

NOX::Abstract::Group::ReturnType	applyJacobianTranspose (const NOX::Thyra::Vector &input, NOX::Thyra::Vector &result) const

NOX::Abstract::Group::ReturnType	applyJacobianTransposeMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	applyJacobianTranspose for multiple right-hand sides More...

NOX::Abstract::Group::ReturnType	applyJacobianInverse (Teuchos::ParameterList &params, const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Applies the inverse of the Jacobian matrix to the given input vector and puts the answer in result. More...

NOX::Abstract::Group::ReturnType	applyJacobianInverse (Teuchos::ParameterList &params, const NOX::Thyra::Vector &input, NOX::Thyra::Vector &result) const

NOX::Abstract::Group::ReturnType	applyJacobianInverseMultiVector (Teuchos::ParameterList &params, const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	applyJacobianInverse for multiple right-hand sides More...

NOX::Abstract::Group::ReturnType	applyRightPreconditioning (bool useTranspose, Teuchos::ParameterList &params, const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Apply right preconditiong to the given input vector. More...

bool	isF () const
	Return true if F is valid.

bool	isJacobian () const
	Return true if the Jacobian is valid. More...

bool	isGradient () const
	Return true if the gradient is valid. More...

bool	isNewton () const
	Return true if the Newton direction is valid. More...

const NOX::Abstract::Vector &	getX () const
	Return solution vector.

const NOX::Abstract::Vector &	getScaledX () const

const NOX::Abstract::Vector &	getF () const
	Return F(x)

double	getNormF () const
	Return 2-norm of F(x). More...

const NOX::Abstract::Vector &	getGradient () const
	Return gradient.

const NOX::Abstract::Vector &	getNewton () const
	Return Newton direction.

Teuchos::RCP< const NOX::Abstract::Vector >	getXPtr () const
	Return RCP to solution vector.

Teuchos::RCP< const NOX::Abstract::Vector >	getFPtr () const
	Return RCP to F(x)

Teuchos::RCP< const NOX::Abstract::Vector >	getGradientPtr () const
	Return RCP to gradient.

Teuchos::RCP< const NOX::Abstract::Vector >	getNewtonPtr () const
	Return RCP to Newton direction.

Public Member Functions inherited from NOX::Abstract::Group
	Group ()
	Constructor. More...

virtual Teuchos::RCP < NOX::Abstract::Group >	getNestedGroup ()
	Return an internally stored group from this group. More...

virtual Teuchos::RCP< const NOX::Abstract::Group >	getNestedGroup () const
	Return an internally stored group from this group. More...

virtual NOX::Abstract::Group::ReturnType	applyRightPreconditioningMultiVector (bool useTranspose, Teuchos::ParameterList &params, const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	applyRightPreconditioning for multiple right-hand sides More...

virtual NOX::Abstract::Group::ReturnType	getNormLastLinearSolveResidual (double &residual) const
	Return the norm of the last linear solve residual as the result of either a call to computeNewton() or applyJacobianInverse(). More...

Public Member Functions inherited from LOCA::Abstract::Group
	Group (const Teuchos::RCP< LOCA::GlobalData > &global_data)
	Constructor.

	Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, const Teuchos::RCP< LOCA::DerivUtils > &deriv)
	Constructor.

	Group (const Group &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual NOX::Abstract::Group::ReturnType	augmentJacobianForHomotopy (double a, double b)
	Replace Jacobian by where is the identity matrix and is a scalar. More...

virtual NOX::Abstract::Group::ReturnType	computeSecondShiftedMatrix (double alpha, double beta)
	Compute the second shifted matrix. Can avoid recomputing if two are stored. More...

virtual NOX::Abstract::Group::ReturnType	applySecondShiftedMatrix (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const
	Multiply the shifted matrix by a vector. More...

virtual NOX::Abstract::Group::ReturnType	applySecondShiftedMatrixMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const
	Multiply the shifted matrix by a multi-vector. More...

virtual bool	isComplex () const
	Is $J+i\omega B$ valid. More...

virtual NOX::Abstract::Group::ReturnType	computeComplex (double frequency)
	Compute $J+i\omega B$ . More...

virtual NOX::Abstract::Group::ReturnType	applyComplex (const NOX::Abstract::Vector &input_real, const NOX::Abstract::Vector &input_imag, NOX::Abstract::Vector &result_real, NOX::Abstract::Vector &result_imag) const
	Compute $(J+i\omega B)(y+iz)$ . More...

virtual NOX::Abstract::Group::ReturnType	applyComplexMultiVector (const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const
	Compute $(J+i\omega B)(y+iz)$ . More...

virtual NOX::Abstract::Group::ReturnType	applyComplexInverseMultiVector (Teuchos::ParameterList &params, const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const
	Solve $(J+i\omega B)(y+iz) = a+ib$ . More...

virtual NOX::Abstract::Group::ReturnType	applyComplexTranspose (const NOX::Abstract::Vector &input_real, const NOX::Abstract::Vector &input_imag, NOX::Abstract::Vector &result_real, NOX::Abstract::Vector &result_imag) const

virtual NOX::Abstract::Group::ReturnType	applyComplexTransposeMultiVector (const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const

virtual NOX::Abstract::Group::ReturnType	applyComplexTransposeInverseMultiVector (Teuchos::ParameterList &params, const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const
	Solve $(J+i\omega B)^H (x + iy) = a+ib$ .

virtual void	setParamsMulti (const std::vector< int > &paramIDs, const NOX::Abstract::MultiVector::DenseMatrix &vals)
	Set parameters indexed by (integer) paramIDs.

virtual void	notifyCompletedStep ()

virtual double	computeFreeEnergy ()
	Computes the free energy at the current solution and parameter values.

Public Member Functions inherited from LOCA::Homotopy::AbstractGroup
	AbstractGroup ()
	Default constructor.

virtual	~AbstractGroup ()
	Destructor.

Public Member Functions inherited from LOCA::MultiContinuation::AbstractGroup
	AbstractGroup ()
	Default constructor.

Public Member Functions inherited from LOCA::TurningPoint::MinimallyAugmented::FiniteDifferenceGroup
	FiniteDifferenceGroup ()
	Constructor.

	FiniteDifferenceGroup (const FiniteDifferenceGroup &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual	~FiniteDifferenceGroup ()
	Destructor.

virtual NOX::Abstract::Group::ReturnType	computeDwtJnDp (const std::vector< int > &paramIDs, const NOX::Abstract::Vector &w, const NOX::Abstract::Vector &nullVector, NOX::Abstract::MultiVector::DenseMatrix &result, bool isValid)
	Computes the derivative $\partial w^TJn/\partial p$ . More...

virtual NOX::Abstract::Group::ReturnType	computeDwtJDp (const std::vector< int > &paramIDs, const NOX::Abstract::Vector &w, NOX::Abstract::MultiVector &result, bool isValid)
	Computes the derivative $\partial w^TJ/\partial p$ . More...

virtual NOX::Abstract::Group::ReturnType	computeDwtJnDx (const NOX::Abstract::Vector &w, const NOX::Abstract::Vector &nullVector, NOX::Abstract::Vector &result)
	Computes the derivative $\frac{\partial w^TJn}{\partial x}$ . More...

Public Member Functions inherited from LOCA::TurningPoint::MinimallyAugmented::AbstractGroup
	AbstractGroup ()
	Default constructor.

Public Member Functions inherited from LOCA::TurningPoint::MooreSpence::AbstractGroup
	AbstractGroup ()
	Default constructor.

Public Member Functions inherited from LOCA::TurningPoint::MooreSpence::FiniteDifferenceGroup
	FiniteDifferenceGroup ()
	Constructor.

	FiniteDifferenceGroup (const FiniteDifferenceGroup &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual NOX::Abstract::Group::ReturnType	computeDJnDpMulti (const std::vector< int > &paramIDs, const NOX::Abstract::Vector &nullVector, NOX::Abstract::MultiVector &result, bool isValid)
	Computes the derivative $\partial Jn/\partial p$ . More...

virtual NOX::Abstract::Group::ReturnType	computeDJnDxaMulti (const NOX::Abstract::Vector &nullVector, const NOX::Abstract::MultiVector &aVector, NOX::Abstract::MultiVector &result)
	Computes the directional derivative $\frac{\partial Jn}{\partial x} a$ for the given direction . More...

virtual NOX::Abstract::Group::ReturnType	computeDJnDxaMulti (const NOX::Abstract::Vector &nullVector, const NOX::Abstract::Vector &JnVector, const NOX::Abstract::MultiVector &aVector, NOX::Abstract::MultiVector &result)
	Computes the directional derivative $\frac{\partial Jn}{\partial x} a$ for the given direction . More...

virtual NOX::Abstract::Group::ReturnType	computeDwtJnDxMulti (const NOX::Abstract::MultiVector &w, const NOX::Abstract::Vector &nullVector, NOX::Abstract::MultiVector &result)
	Computes the derivative $\frac{\partial w^TJn}{\partial x}$ . More...

Public Member Functions inherited from LOCA::MultiContinuation::FiniteDifferenceGroup
	FiniteDifferenceGroup ()
	Constructor.

	FiniteDifferenceGroup (const FiniteDifferenceGroup &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual void	setDerivUtils (const Teuchos::RCP< LOCA::DerivUtils > &deriv)
	Set the LOCA::DerivUtils object.

Public Member Functions inherited from LOCA::Pitchfork::MinimallyAugmented::AbstractGroup
	AbstractGroup ()
	Default constructor.

virtual	~AbstractGroup ()
	Destructor.

Public Member Functions inherited from LOCA::Pitchfork::MooreSpence::AbstractGroup
	AbstractGroup ()
	Default constructor.

virtual double	innerProduct (const NOX::Abstract::Vector &a, const NOX::Abstract::Vector &b) const
	Compute the inner product of `a` and `b`. More...

virtual void	innerProduct (const NOX::Abstract::MultiVector &a, const NOX::Abstract::MultiVector &b, NOX::Abstract::MultiVector::DenseMatrix &c) const
	Compute the inner product of `a` and `b`. More...

Public Member Functions inherited from LOCA::Hopf::MinimallyAugmented::FiniteDifferenceGroup
	FiniteDifferenceGroup ()
	Constructor.

	FiniteDifferenceGroup (const FiniteDifferenceGroup &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual	~FiniteDifferenceGroup ()
	Destructor.

virtual NOX::Abstract::Group::ReturnType	computeDwtCeDp (const std::vector< int > &paramIDs, const NOX::Abstract::Vector &w1, const NOX::Abstract::Vector &w2, const NOX::Abstract::Vector &y, const NOX::Abstract::Vector &x, double omega, NOX::Abstract::MultiVector::DenseMatrix &result_real, NOX::Abstract::MultiVector::DenseMatrix &result_imag, bool isValid)
	Computes the derivative $\partial w^TCe/\partial p$ . More...

virtual NOX::Abstract::Group::ReturnType	computeDwtCeDx (const NOX::Abstract::Vector &w1, const NOX::Abstract::Vector &w2, const NOX::Abstract::Vector &y, const NOX::Abstract::Vector &z, double omega, NOX::Abstract::Vector &result_real, NOX::Abstract::Vector &result_imag)
	Computes the derivative $\frac{\partial w^TCe}{\partial x}$ . More...

Public Member Functions inherited from LOCA::Hopf::MinimallyAugmented::AbstractGroup
	AbstractGroup ()
	Default constructor.

virtual	~AbstractGroup ()
	Destructor.

Public Member Functions inherited from LOCA::Hopf::MooreSpence::AbstractGroup
	AbstractGroup ()
	Default constructor.

Public Member Functions inherited from LOCA::TimeDependent::AbstractGroup
	AbstractGroup ()
	Default constructor.

Public Member Functions inherited from LOCA::Hopf::MooreSpence::FiniteDifferenceGroup
	FiniteDifferenceGroup ()
	Constructor.

	FiniteDifferenceGroup (const FiniteDifferenceGroup &source, NOX::CopyType type=NOX::DeepCopy)
	Copy constructor.

virtual NOX::Abstract::Group::ReturnType	computeDCeDp (const std::vector< int > &paramIDs, const NOX::Abstract::Vector &yVector, const NOX::Abstract::Vector &zVector, double w, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag, bool isValid)
	Computes the derivative $\frac{\partial (J+i\omega B)(y+iz)}{\partial p}$ where is the parameter indexed by paramIDs. More...

virtual NOX::Abstract::Group::ReturnType	computeDCeDxa (const NOX::Abstract::Vector &yVector, const NOX::Abstract::Vector &zVector, double w, const NOX::Abstract::MultiVector &aVector, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag)
	Computes the directional derivative $\frac{\partial (J+i\omega B)(y+iz)}{\partial x} a$ for the given direction . More...

virtual NOX::Abstract::Group::ReturnType	computeDCeDxa (const NOX::Abstract::Vector &yVector, const NOX::Abstract::Vector &zVector, double w, const NOX::Abstract::MultiVector &aVector, const NOX::Abstract::Vector &Ce_real, const NOX::Abstract::Vector &Ce_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag)
	Computes the directional derivative $\frac{\partial (J+i\omega B)(y+iz)}{\partial x} a$ for the given direction . The arguments Ce_real and Ce_imag hold the real and imaginary components of $(J+i\omega B)(y+iz)$ . More...

Public Member Functions inherited from LOCA::PhaseTransition::AbstractGroup
	AbstractGroup ()
	Default constructor.

virtual	~AbstractGroup ()
	Destructor.

Protected Attributes
Teuchos::RCP< LOCA::GlobalData >	globalData
	Global data.

LOCA::ParameterVector	params
	Parameter vector.

std::vector< int >	param_index
	Parameter index in Thyra::ModelEvaluator.

std::vector< Teuchos::RCP < const ::Thyra::VectorBase < double > > >	param_thyra_vec
	Pointer to Thyra vector storing parameters.

Teuchos::RCP< const ::Thyra::VectorBase< double > >	x_dot_vec
	Pointer to x_dot vector of zeros.

Teuchos::RCP < LOCA::Thyra::SaveDataStrategy >	saveDataStrategy
	Strategy object for saving continuation data.

bool	implement_dfdp
	Whether we should implement df/dp, or use DerivUtils.

Teuchos::RCP< const ::Thyra::VectorBase< double > >	weight_vec_
	Optional weighting vector for function scaling. More...

bool	paramsInSeparatePVecs

bool	set_transient_in_args_

Protected Attributes inherited from NOX::Thyra::Group
Teuchos::RCP< const ::Thyra::ModelEvaluator < double > >	model_
	Problem interface.

Teuchos::RCP< NOX::Thyra::Vector >	x_vec_
	Solution vector.

Teuchos::RCP< NOX::Thyra::Vector >	f_vec_
	Residual vector.

Teuchos::RCP< NOX::Thyra::Vector >	newton_vec_
	Newton direction vector.

Teuchos::RCP< NOX::Thyra::Vector >	gradient_vec_
	Gradient direction vector.

Teuchos::RCP < NOX::SharedObject < ::Thyra::LinearOpWithSolveBase < double >, NOX::Thyra::Group > >	shared_jacobian_
	Shared Jacobian operator with solve.

Teuchos::RCP < ::Thyra::LinearOpBase < double > >	lop_
	Jacobian operator.

Teuchos::RCP< const ::Thyra::LinearOpWithSolveFactoryBase < double > >	lows_factory_
	Thyra LOWS factory for building Jacobians.

Teuchos::RCP< const ::Thyra::DefaultLinearOpSource < double > >	losb_
	Source base needed to create preconditioner.

Teuchos::RCP < ::Thyra::PreconditionerBase < double > >	prec_
	Preconditioner for Jacobian.

Teuchos::RCP < ::Thyra::PreconditionerFactoryBase < double > >	prec_factory_
	Preconditioner factory.

Teuchos::RCP< const ::Thyra::VectorBase< double > >	weight_vec_
	Optional wieghting vector for function scaling. NOX assumes that this vector can be updated in between nonlinear iterations. More...

Teuchos::RCP< const ::Thyra::VectorBase< double > >	right_weight_vec_
	Optional wieghting vector for solution (right) scaling.

Teuchos::RCP < ::Thyra::VectorBase< double > >	inv_weight_vec_
	Inverse of weight vector used to unscale function (left) scaling. NOX assumes that this vector can be updated in between nonlinear iterations.

Teuchos::RCP < ::Thyra::VectorBase< double > >	inv_right_weight_vec_
	Inverse of weight vector used to unscale solution (right) scaling.

Teuchos::RCP< NOX::Thyra::Vector >	scaled_x_vec_
	Scaled solution vector scaled by the.

bool	rightScalingFirst_
	Do right scaling before left scaling?

bool	updatePreconditioner_
	If set to true, the preconditioner matrix values will be automatically updated via precFactory or ModelEvalautor. If set to false, the user must manually handle updating the preconditioner.

NOX::Abstract::Group::ReturnType	last_linear_solve_status_
	The status of the last linear solve performed.

int	last_linear_solve_num_iters_
	Number of iterations for last linear solve performed.

double	last_linear_solve_achieved_tol_
	The tolerance achieved by the last linear solver.

bool	use_pseudo_transient_terms_

Teuchos::RCP< const ::Thyra::VectorBase< double > >	x_dot_

double	alpha_

double	beta_

double	t_

bool	use_base_point_

::Thyra::ModelEvaluatorBase::InArgs < double >	base_point_

bool	is_valid_f_

bool	is_valid_jacobian_

bool	is_valid_newton_dir_

bool	is_valid_gradient_dir_

bool	is_valid_lows_

Protected Attributes inherited from LOCA::Abstract::Group
Teuchos::RCP< LOCA::GlobalData >	globalData
	Global data.

Protected Attributes inherited from LOCA::MultiContinuation::FiniteDifferenceGroup
Teuchos::RCP< DerivUtils >	derivPtr
	Pointer to current DerivUtils derivative computation object.

Additional Inherited Members
Public Types inherited from NOX::Abstract::Group
enum	ReturnType { Ok, NotDefined, BadDependency, NotConverged, Failed }
	The computation of, say, the Newton direction in computeNewton() may fail in many different ways, so we have included a variety of return codes to describe the failures. Of course, we also have a code for success. More...

Protected Member Functions inherited from NOX::Thyra::Group
void	resetIsValidFlags ()
	resets the isValid flags to false

NOX::Abstract::Group::ReturnType	applyJacobianInverseMultiVector (Teuchos::ParameterList &p, const ::Thyra::MultiVectorBase< double > &input,::Thyra::MultiVectorBase< double > &result) const
	Apply Jacobian inverse using Thyra objects.

::Thyra::ESolveMeasureNormType	getThyraNormType (const std::string &name) const

void	updateLOWS () const
	Finalizes LOWS to be a valid solver for the Jacobian.

void	scaleResidualAndJacobian () const

void	unscaleResidualAndJacobian () const

void	computeScaledSolution ()

Detailed Description

Extension of the NOX::Thyra::Group to LOCA.

Member Function Documentation

NOX::Abstract::Group::ReturnType LOCA::Thyra::Group::computeDfDpMulti	(	const std::vector< int > &	paramIDs,
		NOX::Abstract::MultiVector &	dfdp,
		bool	isValidF
	)

virtual

Compute $\partial F/\partial p$ for each parameter $p$ indexed by paramIDs. The first column of dfdp holds F, which is valid if isValidF is true. Otherwise F must be computed.