Namespaces
	workset_utils

	periodic_helpers

Classes
class	GatherFields

class	GatherRefCoords

class	ScatterCellAvgQuantity

class	ScatterCellAvgVector

class	ScatterCellQuantity

class	ScatterFields

class	ScatterVectorFields

class	IOClosureModelFactory

class	IOClosureModelFactory_TemplateBuilder

class	ModelEvaluatorFactory

class	NOXObserverFactory

class	RythmosObserverFactory

struct	PermFunctor

class	WorksetFactory

class	STKConnManager

class	ResponseEvaluatorFactory_SolutionWriter

struct	RespFactorySolnWriter_Builder

class	CubeHexMeshFactory

class	CubeTetMeshFactory

class	CustomMeshFactory

class	ElementDescriptor

class	STK_Interface

class	LineMeshFactory

class	STK_MeshFactory

class	MultiBlockMeshFactory

class	CoordMatcher

class	PlaneMatcher

class	QuarterPlaneMatcher

class	WedgeMatcher

class	PeriodicBC_MatcherBase

class	PeriodicBC_Matcher

class	PeriodicBC_Parser

class	SculptMeshFactory

class	SquareQuadMeshFactory

class	SquareTriMeshFactory

Functions
void	generateLocalMeshInfo (const panzer_stk::STK_Interface &mesh, panzer::LocalMeshInfo &mesh_info)

Teuchos::RCP < Thyra::LinearOpWithSolveFactoryBase < double > >	buildLOWSFactory (bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer_stk::STKConnManager > &stkConn_manager, int spatialDim, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm, const Teuchos::RCP< Teuchos::ParameterList > &strat_params, bool writeCoordinates, bool writeTopo, const Teuchos::RCP< const panzer::GlobalIndexer > &auxGlobalIndexer, bool useCoordinates)

Teuchos::RCP < Thyra::LinearOpWithSolveFactoryBase < double > >	buildLOWSFactory (bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer::ConnManager > &conn_manager, int spatialDim, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm, const Teuchos::RCP< Teuchos::ParameterList > &strat_params, bool writeCoordinates, bool writeTopo, const Teuchos::RCP< const panzer::GlobalIndexer > &auxGlobalIndexer, bool useCoordinates)

Teuchos::RCP< std::vector < panzer::Workset > >	buildWorksets (const panzer_stk::STK_Interface &mesh, const std::string &eBlock, const panzer::WorksetNeeds &needs)

Teuchos::RCP< std::vector < panzer::Workset > >	buildWorksets (const panzer_stk::STK_Interface &mesh, const panzer::WorksetNeeds &needs, const std::string &sideset, const std::string &eBlock, bool useCascade)

Teuchos::RCP< std::map < unsigned, panzer::Workset > >	buildBCWorksets (const panzer_stk::STK_Interface &mesh, const panzer::WorksetNeeds &needs_a, const std::string &blockid_a, const panzer::WorksetNeeds &needs_b, const std::string &blockid_b, const std::string &sideset)

Teuchos::RCP< std::map < unsigned, panzer::Workset > >	buildBCWorksets (const panzer_stk::STK_Interface &mesh, const panzer::WorksetNeeds &needs, const std::string &eblockID, const std::string &sidesetID)

void	computeSidesetNodeNormals (std::unordered_map< unsigned, std::vector< double > > &normals, const Teuchos::RCP< const panzer_stk::STK_Interface > &mesh, const std::string &sidesetName, const std::string &elementBlockName, std::ostream out=NULL, std::ostream pout=NULL)
	Computes the normals for all nodes associated with a sideset surface. More...

void	computeSidesetNodeNormals (std::unordered_map< std::size_t, Kokkos::DynRankView< double, PHX::Device > > &elementToNormalMap, const Teuchos::RCP< const panzer_stk::STK_Interface > &mesh, const std::string &sidesetName, const std::string &elementBlockName, std::ostream out=NULL, std::ostream pout=NULL)
	Computes the normals for all nodes associated with a sideset surface. More...

std::string	transformBCNameForIOSS (std::string &bc_name)

static void	gather_in_block (const std::string &blockId, const panzer::GlobalIndexer &dofMngr, const Epetra_Vector &x, const std::vector< std::size_t > &localCellIds, std::map< std::string, Kokkos::DynRankView< double, PHX::Device > > &fc)

static void	build_local_ids (const panzer_stk::STK_Interface &mesh, std::map< std::string, Teuchos::RCP< std::vector< std::size_t > > > &localIds)

void	write_cell_data (panzer_stk::STK_Interface &mesh, const std::vector< double > &data, const std::string &fieldName)

void	write_solution_data (const panzer::GlobalIndexer &dofMngr, panzer_stk::STK_Interface &mesh, const Epetra_MultiVector &x, const std::string &prefix, const std::string &postfix)

void	write_solution_data (const panzer::GlobalIndexer &dofMngr, panzer_stk::STK_Interface &mesh, const Epetra_Vector &x, const std::string &prefix, const std::string &postfix)

template<typename RAContainer , class Compare >
void	sorted_permutation (const RAContainer &cont, std::vector< std::size_t > &permutation, const Compare &comp)

template<typename RAContainer >
void	sorted_permutation (const RAContainer &cont, std::vector< std::size_t > &permutation)

std::string	version ()

std::size_t	getElementIdx (const std::vector< stk::mesh::Entity > &elements, stk::mesh::Entity const e)

Teuchos::RCP< ElementDescriptor >	buildElementDescriptor (stk::mesh::EntityId elmtId, std::vector< stk::mesh::EntityId > &nodes)

template<typename Matcher >
Teuchos::RCP < PeriodicBC_MatcherBase >	buildPeriodicBC_Matcher (const std::string &left, const std::string &right, const Matcher &matcher, const std::string type="coord")

static std::string	trim_left (const std::string &s)

static std::string	trim_right (const std::string &s)

static std::string	trim (const std::string &s)

Function Documentation

void panzer_stk::generateLocalMeshInfo	(	const panzer_stk::STK_Interface &	mesh,
		panzer::LocalMeshInfo &	mesh_info
	)

Create a structure containing information about the local portion of a given element block

Parameters

[in] mesh Reference to STK mesh interface

Returns: Structure containing local mesh information

Definition at line 761 of file Panzer_STK_LocalMeshUtilities.cpp.

Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > panzer_stk::buildLOWSFactory	(	bool	blockedAssembly,
		const Teuchos::RCP< const panzer::GlobalIndexer > &	globalIndexer,
		const Teuchos::RCP< panzer_stk::STKConnManager > &	stkConn_manager,
		int	spatialDim,
		const Teuchos::RCP< const Teuchos::MpiComm< int > > &	mpi_comm,
		const Teuchos::RCP< Teuchos::ParameterList > &	strat_params,
		bool	writeCoordinates = `false`,
		bool	writeTopo = `false`,
		const Teuchos::RCP< const panzer::GlobalIndexer > &	auxGlobalIndexer = `Teuchos::null`,
		bool	useCoordinates = `true`
	)

Build LOWS factory.

Definition at line 153 of file Panzer_STK_SetupLOWSFactory.cpp.

Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > panzer_stk::buildLOWSFactory	(	bool	blockedAssembly,
		const Teuchos::RCP< const panzer::GlobalIndexer > &	globalIndexer,
		const Teuchos::RCP< panzer::ConnManager > &	conn_manager,
		int	spatialDim,
		const Teuchos::RCP< const Teuchos::MpiComm< int > > &	mpi_comm,
		const Teuchos::RCP< Teuchos::ParameterList > &	strat_params,
		bool	writeCoordinates = `false`,
		bool	writeTopo = `false`,
		const Teuchos::RCP< const panzer::GlobalIndexer > &	auxGlobalIndexer = `Teuchos::null`,
		bool	useCoordinates = `true`
	)

Build LOWS factory.

Definition at line 490 of file Panzer_STK_SetupLOWSFactory.cpp.

Teuchos::RCP< std::vector< panzer::Workset > > panzer_stk::buildWorksets	(	const panzer_stk::STK_Interface &	mesh,
		const std::string &	eBlock,
		const panzer::WorksetNeeds &	needs
	)

Build volumetric worksets for a STK mesh

Parameters

[in]	mesh	A pointer to the STK_Interface used to construct the worksets
[in]	needs	Physics block associated with a particular element block
[in]	eBlock	Element block to build worksets over (the descriptor information)

Returns: vector of worksets for the corresponding element block.

Definition at line 53 of file Panzer_STK_SetupUtilities.cpp.

Teuchos::RCP< std::vector< panzer::Workset > > panzer_stk::buildWorksets	(	const panzer_stk::STK_Interface &	mesh,
		const panzer::WorksetNeeds &	needs,
		const std::string &	sideset,
		const std::string &	eBlock,
		bool	useCascade = `false`
	)

Build volumetric worksets for a STK mesh with elements that touch a particular sideset.

Parameters

[in]	mesh	A pointer to the STK_Interface used to construct the worksets
[in]	needs	Needs associated with the element block
[in]	workset_size	The size of each workset measured in the number of elements
[in]	sideset	The sideset id used to locate volume elements associated with the sideset
[in]	eBlock	Element block to build worksets over (the descriptor information)
[in]	useCascade	If true, worksets will be built for every local node, edge and face that touches the side set. Note that this implies that the workset will have repeated elements. This is useful for higher-order surface flux calculations.

Returns: vector of worksets for the corresponding element block.

Definition at line 74 of file Panzer_STK_SetupUtilities.cpp.

Teuchos::RCP< std::map< unsigned, panzer::Workset > > panzer_stk::buildBCWorksets	(	const panzer_stk::STK_Interface &	mesh,
		const panzer::WorksetNeeds &	needs_a,
		const std::string &	blockid_a,
		const panzer::WorksetNeeds &	needs_b,
		const std::string &	blockid_b,
		const std::string &	sideset
	)

Build side worksets with elements on both sides (this is for DG)

Parameters

[in]	mesh	A pointer to the STK_Interface used to construct the worksets
[in]	needs_a	Needs of these worksets
[in]	blockid_a	Element block id
[in]	needs_b	Needs of these worksets
[in]	blockid_b	Element block id
[in]	workset_size	The size of each workset measured in the number of elements
[in]	sideset	The sideset id used to locate volume elements associated with the sideset

Returns: vector of worksets for the corresponding edge

Definition at line 193 of file Panzer_STK_SetupUtilities.cpp.

Teuchos::RCP< std::map< unsigned, panzer::Workset > > panzer_stk::buildBCWorksets	(	const panzer_stk::STK_Interface &	mesh,
		const panzer::WorksetNeeds &	needs,
		const std::string &	eblockID,
		const std::string &	sidesetID
	)

Build boundary condition worksets for a STK mesh

Parameters

[in]	mesh	A pointer to the STK_Interface used to construct the worksets
[in]	needs	Physics block associated with the element block
[in]	eblockID	Name of sideset
[in]	sidesetID	Name of sideset

Returns: Map relating local element side IDs to a workset.

Note: All elements for a bc that are associated with a particular side ID are grouped into a single workset

Definition at line 282 of file Panzer_STK_SetupUtilities.cpp.

void panzer_stk::computeSidesetNodeNormals	(	std::unordered_map< unsigned, std::vector< double > > &	normals,
		const Teuchos::RCP< const panzer_stk::STK_Interface > &	mesh,
		const std::string &	sidesetName,
		const std::string &	elementBlockName,
		std::ostream *	out = `NULL`,
		std::ostream *	pout = `NULL`
	)

Computes the normals for all nodes associated with a sideset surface.

Computes the node normals for a given side set. This computation will use ghosted element contributions for all surfaces associated with the node, but will only use elements associated with the sideset. So if two sidesets adjoin at the seam, the nodes on the seam will NOT have the same node normal. A simple future addition would be to allow for a list of sidesets to be provided to allow for the union computation.

Parameters

[out]	normals	Map of the node normals (including ghosted nodes). Key is the global id from the stk mesh node entity id and value is vector of the size of the parent element dimension containing the normal vector components. Vector components will be resized on calling this method.
[in]	mesh	(Required) Panzer stk mesh
[in]	sidesetName	(Required) Name of the sideset that the normals will be computed on
[in]	elementBlockName	(Required) Name of the element block that the outward facing normals will be computed on
[in]	out	(Optional) The ostream used for serial debug output on print process only. If non-null this will print debug info.
[in]	pout	(Optional) The ostream used for parallel debug output by all processes. If non-null this will print debug info.

Definition at line 67 of file Panzer_STK_SurfaceNodeNormals.cpp.

void panzer_stk::computeSidesetNodeNormals	(	std::unordered_map< std::size_t, Kokkos::DynRankView< double, PHX::Device > > &	elementToNormalMap,
		const Teuchos::RCP< const panzer_stk::STK_Interface > &	mesh,
		const std::string &	sidesetName,
		const std::string &	elementBlockName,
		std::ostream *	out = `NULL`,
		std::ostream *	pout = `NULL`
	)

Computes the normals for all nodes associated with a sideset surface.

Computes the node normals for a given side set. This computation will use ghosted element contributions for all surfaces associated with the node, but will only use elements associated with the sideset. So if two sidesets adjoin at the seam, the nodes on the seam will NOT have the same node normal. A simple future addition would be to allow for a list of sidesets to be provided to allow for the union computation.

Parameters

[out]	normals	Map of the node normals (including ghosted nodes). Key is the panzer_stk::STK_Interface local element id and value is a multidimensional array of the size of the number of nodes times the parent element dimension containing the normal vector components. Vector components will be resized on calling this method.
[in]	mesh	(Required) Panzer stk mesh
[in]	sidesetName	(Required) Name of the sideset that the normals will be computed on
[in]	elementBlockName	(Required) Name of the element block that the outward facing normals will be computed on
[in]	out	(Optional) The ostream used for serial debug output on print process only. If non-null this will print debug info.
[in]	pout	(Optional) The ostream used for parallel debug output by all processes. If non-null this will print debug info.

Definition at line 234 of file Panzer_STK_SurfaceNodeNormals.cpp.

std::string panzer_stk::transformBCNameForIOSS ( std::string & bc_name )

Takes a sideset or nodeset name and transforms it for IOSS restrictions. Cubit replaces whitespace in sideset and nodeset names with underscores when writing to exodus. When IOSS reads exodus files into STK, it replaces all capital letters with lowercase letters. This function allows you to use the name labels used in Cubit and tie them to the correct nodeset or sideset in a STK mesh database.

Definition at line 6 of file Panzer_STK_TransformBCNameForIOSS.cpp.

void panzer_stk::gather_in_block	(	const std::string &	blockId,
		const panzer::GlobalIndexer &	dofMngr,
		const Epetra_Vector &	x,
		const std::vector< std::size_t > &	localCellIds,
		std::map< std::string, Kokkos::DynRankView< double, PHX::Device > > &	fc
	)

static

Definition at line 115 of file Panzer_STK_Utilities.cpp.

void panzer_stk::build_local_ids	(	const panzer_stk::STK_Interface &	mesh,
		std::map< std::string, Teuchos::RCP< std::vector< std::size_t > > > &	localIds
	)

static

Definition at line 152 of file Panzer_STK_Utilities.cpp.

void panzer_stk::write_cell_data	(	panzer_stk::STK_Interface &	mesh,
		const std::vector< double > &	data,
		const std::string &	fieldName
	)

Write a vector to the cell data of a STK mesh. This will look up the cell field prefix+fieldName+postfix, which is assumed to be in the STK mesh object. If not an assertion exeption will be thrown.

Parameters

[in]	mesh	STK mesh object
[in]	data	Vector of doubles equatl to the total number of elements on this processor
[in]	fieldName	Name of field to be written (must be a STK field)

Definition at line 61 of file Panzer_STK_Utilities.cpp.

void panzer_stk::write_solution_data	(	const panzer::GlobalIndexer &	dofMngr,
		panzer_stk::STK_Interface &	mesh,
		const Epetra_MultiVector &	x,
		const std::string &	prefix,
		const std::string &	postfix
	)

Definition at line 84 of file Panzer_STK_Utilities.cpp.

void panzer_stk::write_solution_data	(	const panzer::GlobalIndexer &	dofMngr,
		panzer_stk::STK_Interface &	mesh,
		const Epetra_Vector &	x,
		const std::string &	prefix,
		const std::string &	postfix
	)

Definition at line 89 of file Panzer_STK_Utilities.cpp.

template<typename RAContainer , class Compare >

void panzer_stk::sorted_permutation	(	const RAContainer &	cont,
		std::vector< std::size_t > &	permutation,
		const Compare &	comp
	)

Using a container, compute the sorted permutation vector do not modifiy the original container.

Motivated by this board on StackOverflow: http://stackoverflow.com/questions/4523220/sorting-a-vector-of-double-precision-reals-and-obtain-their-order

Definition at line 117 of file Panzer_STK_Utilities.hpp.

template<typename RAContainer >

void panzer_stk::sorted_permutation	(	const RAContainer &	cont,
		std::vector< std::size_t > &	permutation
	)

Using a container, compute the sorted permutation vector do not modifiy the original container.

Motivated by this board on StackOverflow: http://stackoverflow.com/questions/4523220/sorting-a-vector-of-double-precision-reals-and-obtain-their-order

Definition at line 110 of file Panzer_STK_Utilities.hpp.

std::string panzer_stk::version ( )

Definition at line 48 of file Panzer_STK_Version.cpp.

std::size_t panzer_stk::getElementIdx	(	const std::vector< stk::mesh::Entity > &	elements,
		stk::mesh::Entity const	e
	)

inline

Definition at line 398 of file Panzer_STKConnManager.cpp.

Teuchos::RCP< ElementDescriptor > panzer_stk::buildElementDescriptor	(	stk::mesh::EntityId	elmtId,
		std::vector< stk::mesh::EntityId > &	nodes
	)

Constructor function for building the element descriptors.

Definition at line 93 of file Panzer_STK_Interface.cpp.

template<typename Matcher >

Teuchos::RCP<PeriodicBC_MatcherBase> panzer_stk::buildPeriodicBC_Matcher	(	const std::string &	left,
		const std::string &	right,
		const Matcher &	matcher,
		const std::string	type = `"coord"`
	)

A simple constructor function for building a matcher object. This prevents the need to directly instantiate the templated derived class. It is a convenience.

Definition at line 250 of file Panzer_STK_PeriodicBC_Matcher.hpp.

static std::string panzer_stk::trim_left ( const std::string & s )

static

Definition at line 164 of file Panzer_STK_PeriodicBC_Parser.cpp.

static std::string panzer_stk::trim_right ( const std::string & s )

static

Definition at line 171 of file Panzer_STK_PeriodicBC_Parser.cpp.

static std::string panzer_stk::trim ( const std::string & s )

static

Definition at line 178 of file Panzer_STK_PeriodicBC_Parser.cpp.

Namespaces

Classes

Functions

Function Documentation