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panzer_stk::STKConnManager Class Reference

#include <Panzer_STKConnManager.hpp>

Inheritance diagram for panzer_stk::STKConnManager:
Inheritance graph
[legend]

Public Types

typedef
panzer::ConnManager::LocalOrdinal 		LocalOrdinal
 
typedef
panzer::ConnManager::GlobalOrdinal 		GlobalOrdinal
 
- Public Types inherited from panzer::ConnManager
using GlobalOrdinal = panzer::GlobalOrdinal
 
using LocalOrdinal = int
 

Public Member Functions

 STKConnManager (const Teuchos::RCP< const STK_Interface > &stkMeshDB)
 
virtual ~STKConnManager ()
 
virtual void buildConnectivity (const panzer::FieldPattern &fp)
 
virtual Teuchos::RCP
< panzer::ConnManager > 		noConnectivityClone () const
 
virtual const
panzer::GlobalOrdinal * 		getConnectivity (LocalOrdinal localElmtId) const
 
virtual panzer::GlobalOrdinal * getConnectivity (LocalOrdinal localElmtId)
 
virtual LocalOrdinal getConnectivitySize (LocalOrdinal localElmtId) const
 
virtual std::string getBlockId (LocalOrdinal localElmtId) const
 
virtual std::size_t numElementBlocks () const
 
virtual void getElementBlockIds (std::vector< std::string > &elementBlockIds) const
 
virtual void getElementBlockTopologies (std::vector< shards::CellTopology > &elementBlockTopologies) const
 
virtual const std::vector
< LocalOrdinal > & 		getElementBlock (const std::string &blockId) const
 
virtual const std::vector
< LocalOrdinal > & 		getNeighborElementBlock (const std::string &blockId) const
 
virtual void getDofCoords (const std::string &blockId, const panzer::Intrepid2FieldPattern &coordProvider, std::vector< std::size_t > &localCellIds, Kokkos::DynRankView< double, PHX::Device > &points) const
 
Teuchos::RCP< const STK_Interface > getSTKInterface () const
 
std::size_t getOwnedElementCount () const
 
void associateElementsInSideset (const std::string sideset_id)
 
std::vector< std::string > checkAssociateElementsInSidesets (const Teuchos::Comm< int > &comm) const
 
virtual const std::vector
< LocalOrdinal > & 		getAssociatedNeighbors (const LocalOrdinal &el) const
 
virtual bool hasAssociatedNeighbors () const
 
- Public Member Functions inherited from panzer::ConnManager
virtual ~ConnManager ()
 

Protected Member Functions

void applyPeriodicBCs (const panzer::FieldPattern &fp, GlobalOrdinal nodeOffset, GlobalOrdinal edgeOffset, GlobalOrdinal faceOffset, GlobalOrdinal cellOffset)
 
void applyInterfaceConditions ()
 
void buildLocalElementMapping ()
 
void clearLocalElementMapping ()
 
void buildOffsetsAndIdCounts (const panzer::FieldPattern &fp, LocalOrdinal &nodeIdCnt, LocalOrdinal &edgeIdCnt, LocalOrdinal &faceIdCnt, LocalOrdinal &cellIdCnt, GlobalOrdinal &nodeOffset, GlobalOrdinal &edgeOffset, GlobalOrdinal &faceOffset, GlobalOrdinal &cellOffset) const
 
LocalOrdinal addSubcellConnectivities (stk::mesh::Entity element, unsigned subcellRank, LocalOrdinal idCnt, GlobalOrdinal offset)
 
void modifySubcellConnectivities (const panzer::FieldPattern &fp, stk::mesh::Entity element, unsigned subcellRank, unsigned subcellId, GlobalOrdinal newId, GlobalOrdinal offset)
 

Protected Attributes

Teuchos::RCP< const STK_Interface > stkMeshDB_
 
Teuchos::RCP< std::vector
< stk::mesh::Entity > > 		elements_
 
std::map< std::string,
Teuchos::RCP< std::vector
< LocalOrdinal > > > 		elementBlocks_
 
std::map< std::string,
Teuchos::RCP< std::vector
< LocalOrdinal > > > 		neighborElementBlocks_
 
std::map< std::string,
GlobalOrdinal > 		blockIdToIndex_
 
std::vector< LocalOrdinal > elmtLidToConn_
 
std::vector< LocalOrdinal > connSize_
 
std::vector< GlobalOrdinal > connectivity_
 
std::size_t ownedElementCount_
 
std::vector< std::string > sidesetsToAssociate_
 
std::vector< bool > sidesetYieldedAssociations_
 
std::vector< std::vector
< LocalOrdinal > > 		elmtToAssociatedElmts_
 

Detailed Description

Definition at line 62 of file Panzer_STKConnManager.hpp.

Member Typedef Documentation

typedef panzer::ConnManager::LocalOrdinal panzer_stk::STKConnManager::LocalOrdinal

Definition at line 64 of file Panzer_STKConnManager.hpp.

typedef panzer::ConnManager::GlobalOrdinal panzer_stk::STKConnManager::GlobalOrdinal

Definition at line 65 of file Panzer_STKConnManager.hpp.

Constructor & Destructor Documentation

panzer_stk::STKConnManager::STKConnManager ( const Teuchos::RCP< const STK_Interface > &  stkMeshDB)

Definition at line 78 of file Panzer_STKConnManager.cpp.

virtual panzer_stk::STKConnManager::~STKConnManager ( )
inlinevirtual

Definition at line 69 of file Panzer_STKConnManager.hpp.

Member Function Documentation

void panzer_stk::STKConnManager::buildConnectivity ( const panzer::FieldPattern &  fp)
virtual

Tell the connection manager to build the connectivity assuming a particular field pattern.

Parameters
[in]fpField pattern to build connectivity for

Implements panzer::ConnManager.

Definition at line 245 of file Panzer_STKConnManager.cpp.

Teuchos::RCP< panzer::ConnManager > panzer_stk::STKConnManager::noConnectivityClone ( ) const
virtual

Build a clone of this connection manager, without any assumptions about the required connectivity (e.g. buildConnectivity has never been called).

Implements panzer::ConnManager.

Definition at line 84 of file Panzer_STKConnManager.cpp.

virtual const panzer::GlobalOrdinal* panzer_stk::STKConnManager::getConnectivity ( LocalOrdinal  localElmtId) const
inlinevirtual

Get ID connectivity for a particular element

Parameters
[in]localElmtIdLocal element ID
Returns
Pointer to beginning of indices, with total size equal to getConnectivitySize(localElmtId)

Implements panzer::ConnManager.

Definition at line 91 of file Panzer_STKConnManager.hpp.

virtual panzer::GlobalOrdinal* panzer_stk::STKConnManager::getConnectivity ( LocalOrdinal  localElmtId)
inlinevirtual

Get ID connectivity for a particular element

Parameters
[in]localElmtIdLocal element ID
Returns
Pointer to beginning of indices, with total size equal to getConnectivitySize(localElmtId)

Definition at line 101 of file Panzer_STKConnManager.hpp.

virtual LocalOrdinal panzer_stk::STKConnManager::getConnectivitySize ( LocalOrdinal  localElmtId) const
inlinevirtual

How many mesh IDs are associated with this element?

Parameters
[in]localElmtIdLocal element ID
Returns
Number of mesh IDs that are associated with this element.

Implements panzer::ConnManager.

Definition at line 110 of file Panzer_STKConnManager.hpp.

std::string panzer_stk::STKConnManager::getBlockId ( STKConnManager::LocalOrdinal  localElmtId) const
virtual

Get the block ID for a particular element.

Parameters
[in]localElmtIdLocal element ID

Implements panzer::ConnManager.

Definition at line 306 of file Panzer_STKConnManager.cpp.

virtual std::size_t panzer_stk::STKConnManager::numElementBlocks ( ) const
inlinevirtual

How many element blocks in this mesh?

Implements panzer::ConnManager.

Definition at line 121 of file Panzer_STKConnManager.hpp.

virtual void panzer_stk::STKConnManager::getElementBlockIds ( std::vector< std::string > &  elementBlockIds) const
inlinevirtual

Get block IDs from STK mesh object

Implements panzer::ConnManager.

Definition at line 126 of file Panzer_STKConnManager.hpp.

virtual void panzer_stk::STKConnManager::getElementBlockTopologies ( std::vector< shards::CellTopology > &  elementBlockTopologies) const
inlinevirtual

What are the cellTopologies linked to element blocks in this connection manager?

Implements panzer::ConnManager.

Definition at line 130 of file Panzer_STKConnManager.hpp.

virtual const std::vector<LocalOrdinal>& panzer_stk::STKConnManager::getElementBlock ( const std::string &  blockId) const
inlinevirtual

Get the local element IDs for a paricular element block. These are only the owned element ids.

Parameters
[in]blockIndexBlock Index
Returns
Vector of local element IDs.

Implements panzer::ConnManager.

Definition at line 145 of file Panzer_STKConnManager.hpp.

virtual const std::vector<LocalOrdinal>& panzer_stk::STKConnManager::getNeighborElementBlock ( const std::string &  blockId) const
inlinevirtual

Get the local element IDs for a paricular element block. These element ids are not owned, and the element will live on another processor.

Parameters
[in]blockIndexBlock Index
Returns
Vector of local element IDs.

Implements panzer::ConnManager.

Definition at line 156 of file Panzer_STKConnManager.hpp.

void panzer_stk::STKConnManager::getDofCoords ( const std::string &  blockId,
const panzer::Intrepid2FieldPattern &  coordProvider,
std::vector< std::size_t > &  localCellIds,
Kokkos::DynRankView< double, PHX::Device > &  points 
) const
virtual

Get the coordinates (with local cell ids) for a specified element block and field pattern.

Parameters
[in]blockIdBlock containing the cells
[in]coordProviderField pattern that builds the coordinates
[out]localCellIdsLocal cell Ids (indices)
[out]Resizablefield container that contains the coordinates of the points on exit.

Get the coordinates for a specified element block and field pattern.

Definition at line 369 of file Panzer_STKConnManager.cpp.

Teuchos::RCP<const STK_Interface> panzer_stk::STKConnManager::getSTKInterface ( ) const
inline

Get STK interface that this connection manager is built on.

Definition at line 174 of file Panzer_STKConnManager.hpp.

std::size_t panzer_stk::STKConnManager::getOwnedElementCount ( ) const
inline

How many elements are owned by this processor. Further, the ordering of the local ids is suct that the first getOwnedElementCount() elements are owned by this processor. This is true only because of the local element ids generated by the STK_Interface object.

Definition at line 184 of file Panzer_STKConnManager.hpp.

void panzer_stk::STKConnManager::associateElementsInSideset ( const std::string  sideset_id)

Before calling buildConnectivity, provide sideset IDs from which to extract associated elements.

Definition at line 391 of file Panzer_STKConnManager.cpp.

std::vector< std::string > panzer_stk::STKConnManager::checkAssociateElementsInSidesets ( const Teuchos::Comm< int > &  comm) const

After calling buildConnectivity, optionally check which sidesets yielded no element associations in this communicator. This is a parallel operation. In many applications, the outcome indicating correctness is that the returned vector is empty.

Definition at line 434 of file Panzer_STKConnManager.cpp.

const std::vector< STKConnManager::LocalOrdinal > & panzer_stk::STKConnManager::getAssociatedNeighbors ( const LocalOrdinal &  el) const
virtual

Get elements, if any, associated with el, excluding el itself.

Implements panzer::ConnManager.

Definition at line 447 of file Panzer_STKConnManager.cpp.

bool panzer_stk::STKConnManager::hasAssociatedNeighbors ( ) const
virtual

Return whether getAssociatedNeighbors will return true for at least one input. Default implementation returns false.

Implements panzer::ConnManager.

Definition at line 386 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::applyPeriodicBCs ( const panzer::FieldPattern &  fp,
GlobalOrdinal  nodeOffset,
GlobalOrdinal  edgeOffset,
GlobalOrdinal  faceOffset,
GlobalOrdinal  cellOffset 
)
protected

Apply periodic boundary conditions associated with the mesh object.

Note
This function requires global All-2-All communication IFF periodic boundary conditions are required.

Definition at line 314 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::applyInterfaceConditions ( )
protected

Definition at line 405 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::buildLocalElementMapping ( )
protected

Definition at line 99 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::clearLocalElementMapping ( )
protected

Definition at line 89 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::buildOffsetsAndIdCounts ( const panzer::FieldPattern &  fp,
LocalOrdinal &  nodeIdCnt,
LocalOrdinal &  edgeIdCnt,
LocalOrdinal &  faceIdCnt,
LocalOrdinal &  cellIdCnt,
GlobalOrdinal &  nodeOffset,
GlobalOrdinal &  edgeOffset,
GlobalOrdinal &  faceOffset,
GlobalOrdinal &  cellOffset 
) const
protected

Definition at line 162 of file Panzer_STKConnManager.cpp.

STKConnManager::LocalOrdinal panzer_stk::STKConnManager::addSubcellConnectivities ( stk::mesh::Entity  element,
unsigned  subcellRank,
LocalOrdinal  idCnt,
GlobalOrdinal  offset 
)
protected

Definition at line 204 of file Panzer_STKConnManager.cpp.

void panzer_stk::STKConnManager::modifySubcellConnectivities ( const panzer::FieldPattern &  fp,
stk::mesh::Entity  element,
unsigned  subcellRank,
unsigned  subcellId,
GlobalOrdinal  newId,
GlobalOrdinal  offset 
)
protected

Definition at line 231 of file Panzer_STKConnManager.cpp.

Member Data Documentation

Teuchos::RCP<const STK_Interface> panzer_stk::STKConnManager::stkMeshDB_
protected

Definition at line 233 of file Panzer_STKConnManager.hpp.

Teuchos::RCP<std::vector<stk::mesh::Entity> > panzer_stk::STKConnManager::elements_
protected

Definition at line 235 of file Panzer_STKConnManager.hpp.

std::map<std::string,Teuchos::RCP<std::vector<LocalOrdinal> > > panzer_stk::STKConnManager::elementBlocks_
protected

Definition at line 238 of file Panzer_STKConnManager.hpp.

std::map<std::string,Teuchos::RCP<std::vector<LocalOrdinal> > > panzer_stk::STKConnManager::neighborElementBlocks_
protected

Definition at line 239 of file Panzer_STKConnManager.hpp.

std::map<std::string,GlobalOrdinal> panzer_stk::STKConnManager::blockIdToIndex_
protected

Definition at line 240 of file Panzer_STKConnManager.hpp.

std::vector<LocalOrdinal> panzer_stk::STKConnManager::elmtLidToConn_
protected

Definition at line 242 of file Panzer_STKConnManager.hpp.

std::vector<LocalOrdinal> panzer_stk::STKConnManager::connSize_
protected

Definition at line 243 of file Panzer_STKConnManager.hpp.

std::vector<GlobalOrdinal> panzer_stk::STKConnManager::connectivity_
protected

Definition at line 244 of file Panzer_STKConnManager.hpp.

std::size_t panzer_stk::STKConnManager::ownedElementCount_
protected

Definition at line 246 of file Panzer_STKConnManager.hpp.

std::vector<std::string> panzer_stk::STKConnManager::sidesetsToAssociate_
protected

Definition at line 248 of file Panzer_STKConnManager.hpp.

std::vector<bool> panzer_stk::STKConnManager::sidesetYieldedAssociations_
protected

Definition at line 249 of file Panzer_STKConnManager.hpp.

std::vector<std::vector<LocalOrdinal> > panzer_stk::STKConnManager::elmtToAssociatedElmts_
protected

Definition at line 250 of file Panzer_STKConnManager.hpp.

The documentation for this class was generated from the following files:
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