#include <Panzer_STK_Interface.hpp>

Classes
struct	ElementBlockException

class	LocalIdCompare

struct	SidesetException

Public Types
typedef double	ProcIdData

typedef stk::mesh::Field< double >	SolutionFieldType

typedef stk::mesh::Field < double, stk::mesh::Cartesian >	VectorFieldType

typedef stk::mesh::Field < ProcIdData >	ProcIdFieldType

Public Member Functions
	STK_Interface ()

	STK_Interface (unsigned dim)

	STK_Interface (Teuchos::RCP< stk::mesh::MetaData > metaData)

void	addElementBlock (const std::string &name, const CellTopologyData *ctData)

void	addSideset (const std::string &name, const CellTopologyData *ctData)

void	addNodeset (const std::string &name)

void	addSolutionField (const std::string &fieldName, const std::string &blockId)

void	addCellField (const std::string &fieldName, const std::string &blockId)

void	addMeshCoordFields (const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix)

void	initialize (stk::ParallelMachine parallelMach, bool setupIO=true, const bool buildRefinementSupport=false)

void	instantiateBulkData (stk::ParallelMachine parallelMach)

void	beginModification ()

void	endModification ()

void	addNode (stk::mesh::EntityId gid, const std::vector< double > &coord)

void	addElement (const Teuchos::RCP< ElementDescriptor > &ed, stk::mesh::Part *block)

void	addEdges ()

void	addFaces ()

void	addEntityToSideset (stk::mesh::Entity entity, stk::mesh::Part *sideset)

void	addEntityToNodeset (stk::mesh::Entity entity, stk::mesh::Part *nodeset)

const VectorFieldType &	getCoordinatesField () const

const VectorFieldType &	getEdgesField () const

const VectorFieldType &	getFacesField () const

const double *	getNodeCoordinates (stk::mesh::EntityId nodeId) const

const double *	getNodeCoordinates (stk::mesh::Entity node) const

void	getSubcellIndices (unsigned entityRank, stk::mesh::EntityId elementId, std::vector< stk::mesh::EntityId > &subcellIds) const

void	getMyElements (std::vector< stk::mesh::Entity > &elements) const

void	getMyElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const

void	getNeighborElements (std::vector< stk::mesh::Entity > &elements) const

void	getNeighborElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const

void	getMySides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const

void	getMySides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const

void	getAllSides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const

void	getAllSides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const

void	getMyNodes (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &nodes) const

stk::mesh::Entity	findConnectivityById (stk::mesh::Entity src, stk::mesh::EntityRank tgt_rank, unsigned rel_id) const

void	writeToExodus (const std::string &filename)
	Write this mesh and associated fields to the given output file. More...

void	setupExodusFile (const std::string &filename)
	Set up an output Exodus file for writing results. More...

void	writeToExodus (double timestep)
	Write this mesh and associated fields at the given `timestep`. More...

void	addGlobalToExodus (const std::string &key, const int &value)
	Add an `int` global variable to the information to be written to the Exodus output file. More...

void	addGlobalToExodus (const std::string &key, const double &value)
	Add a `double` global variable to the information to be written to the Exodus output file. More...

void	addGlobalToExodus (const std::string &key, const std::vector< int > &value)
	Add a `std::vector<int>` global variable to the information to be written to the Exodus output file. More...

void	addGlobalToExodus (const std::string &key, const std::vector< double > &value)
	Add a `std::vector<double>` global variable to the information to be written to the Exodus output file. More...

Teuchos::RCP< const Teuchos::Comm< int > >	getComm () const
	get the comm associated with this mesh More...

Teuchos::RCP< stk::mesh::BulkData >	getBulkData () const

Teuchos::RCP< stk::mesh::MetaData >	getMetaData () const

bool	isWritable () const

bool	isModifiable () const

unsigned	getDimension () const
	get the dimension More...

std::size_t	getNumElementBlocks () const
	get the block count More...

void	getElementBlockNames (std::vector< std::string > &names) const

void	getSidesetNames (std::vector< std::string > &name) const

void	getNodesetNames (std::vector< std::string > &name) const

stk::mesh::Part *	getOwnedPart () const
	Get a pointer to the locally owned part. More...

stk::mesh::Part *	getElementBlockPart (const std::string &name) const
	get the block count More...

std::size_t	getNumSidesets () const
	get the side set count More...

stk::mesh::Part *	getSideset (const std::string &name) const

std::size_t	getNumNodesets () const
	get the side set count More...

stk::mesh::Part *	getNodeset (const std::string &name) const

std::size_t	getEntityCounts (unsigned entityRank) const
	get the global counts for the entity of specified rank More...

stk::mesh::EntityId	getMaxEntityId (unsigned entityRank) const
	get max entity ID of type entityRank More...

void	getElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements) const
	get a set of elements sharing a single node More...

void	getNodeIdsForElement (stk::mesh::Entity element, std::vector< stk::mesh::EntityId > &nodeIds) const
	get a list of node ids for nodes connected to an element More...

void	getOwnedElementsSharingNode (stk::mesh::Entity node, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds) const

void	getOwnedElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds, unsigned int matchType) const

void	getElementsSharingNodes (const std::vector< stk::mesh::EntityId > nodeId, std::vector< stk::mesh::Entity > &elements) const
	get a set of elements sharing multiple nodes More...

void	buildSubcells ()
	force the mesh to build subcells: edges and faces More...

std::size_t	elementLocalId (stk::mesh::Entity elmt) const

std::size_t	elementLocalId (stk::mesh::EntityId gid) const

stk::mesh::EntityId	elementGlobalId (std::size_t lid) const

stk::mesh::EntityId	elementGlobalId (stk::mesh::Entity elmt) const

unsigned	entityOwnerRank (stk::mesh::Entity entity) const

bool	isValid (stk::mesh::Entity entity) const

std::string	containingBlockId (stk::mesh::Entity elmt) const

stk::mesh::Field< double > *	getSolutionField (const std::string &fieldName, const std::string &blockId) const

stk::mesh::Field< double > *	getCellField (const std::string &fieldName, const std::string &blockId) const

ProcIdFieldType *	getProcessorIdField ()

bool	isInitialized () const
	Has `initialize` been called on this mesh object? More...

Teuchos::RCP< const std::vector< stk::mesh::Entity > >	getElementsOrderedByLID () const

template<typename ArrayT >
void	setSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0)

template<typename ArrayT >
void	getSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, ArrayT &solutionValues) const

template<typename ArrayT >
void	setCellFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0)

template<typename ArrayT >
void	getElementVertices (const std::vector< std::size_t > &localIds, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVerticesNoResize (const std::vector< std::size_t > &localIds, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVerticesNoResize (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const

stk::mesh::EntityRank	getElementRank () const

stk::mesh::EntityRank	getSideRank () const

stk::mesh::EntityRank	getFaceRank () const

stk::mesh::EntityRank	getEdgeRank () const

stk::mesh::EntityRank	getNodeRank () const

void	initializeFromMetaData ()

void	buildLocalElementIDs ()

const std::vector < Teuchos::RCP< const PeriodicBC_MatcherBase > > &	getPeriodicBCVector () const

std::vector< Teuchos::RCP < const PeriodicBC_MatcherBase > > &	getPeriodicBCVector ()

void	addPeriodicBC (const Teuchos::RCP< const PeriodicBC_MatcherBase > &bc)

void	addPeriodicBCs (const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &bc_vec)

std::pair< Teuchos::RCP < std::vector< std::pair < std::size_t, std::size_t > > >, Teuchos::RCP < std::vector< unsigned int > > >	getPeriodicNodePairing () const

bool	validBlockId (const std::string &blockId) const

void	print (std::ostream &os) const

void	printMetaData (std::ostream &os) const

Teuchos::RCP< const shards::CellTopology >	getCellTopology (const std::string &eBlock) const

double	getCurrentStateTime () const

double	getInitialStateTime () const

void	setInitialStateTime (double value)

void	rebalance (const Teuchos::ParameterList &params)

void	setBlockWeight (const std::string &blockId, double weight)

void	setUseFieldCoordinates (bool useFieldCoordinates)

bool	getUseFieldCoordinates () const

void	setUseLowerCaseForIO (bool useLowerCase)

bool	getUseLowerCaseForIO () const

template<typename ArrayT >
void	getElementVertices_FromField (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices_FromFieldNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices_FromCoords (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const

template<typename ArrayT >
void	getElementVertices_FromCoordsNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const

void	refineMesh (const int numberOfLevels, const bool deleteParentElements)

Static Public Attributes
static const std::string	coordsString = "coordinates"

static const std::string	nodesString = "nodes"

static const std::string	edgesString = "edges"

static const std::string	facesString = "faces"

Protected Member Functions
void	buildEntityCounts ()

void	buildMaxEntityIds ()

void	initializeFieldsInSTK (const std::map< std::pair< std::string, std::string >, SolutionFieldType * > &nameToField, bool setupIO)

Teuchos::RCP< Teuchos::MpiComm < int > >	getSafeCommunicator (stk::ParallelMachine parallelMach) const

void	applyElementLoadBalanceWeights ()

bool	isMeshCoordField (const std::string &eBlock, const std::string &fieldName, int &axis) const

template<typename ArrayT >
void	setDispFieldData (const std::string &fieldName, const std::string &blockId, int axis, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues)

Protected Attributes
std::vector< Teuchos::RCP < const PeriodicBC_MatcherBase > >	periodicBCs_

Teuchos::RCP< stk::mesh::MetaData >	metaData_

Teuchos::RCP< stk::mesh::BulkData >	bulkData_

std::map< std::string, stk::mesh::Part * >	elementBlocks_

std::map< std::string, stk::mesh::Part * >	sidesets_

std::map< std::string, stk::mesh::Part * >	nodesets_

std::map< std::string, Teuchos::RCP < shards::CellTopology > >	elementBlockCT_

stk::mesh::Part *	nodesPart_

std::vector< stk::mesh::Part * >	nodesPartVec_

stk::mesh::Part *	edgesPart_

std::vector< stk::mesh::Part * >	edgesPartVec_

stk::mesh::Part *	facesPart_

std::vector< stk::mesh::Part * >	facesPartVec_

VectorFieldType *	coordinatesField_

VectorFieldType *	edgesField_

VectorFieldType *	facesField_

ProcIdFieldType *	processorIdField_

SolutionFieldType *	loadBalField_

std::map< std::pair < std::string, std::string > , SolutionFieldType * >	fieldNameToSolution_

std::map< std::pair < std::string, std::string > , SolutionFieldType * >	fieldNameToCellField_

unsigned	dimension_

bool	initialized_

std::vector< std::size_t >	entityCounts_

std::vector< stk::mesh::EntityId >	maxEntityId_

unsigned	procRank_

std::size_t	currentLocalId_

Teuchos::RCP< Teuchos::MpiComm < int > >	mpiComm_

double	initialStateTime_

double	currentStateTime_

Teuchos::RCP< std::vector < stk::mesh::Entity > >	orderedElementVector_

std::map< std::string, double >	blockWeights_

std::unordered_map < stk::mesh::EntityId, std::size_t >	localIDHash_

std::map< std::string, std::vector< std::string > >	meshCoordFields_

std::map< std::string, std::vector< std::string > >	meshDispFields_

bool	useFieldCoordinates_

bool	useLowerCase_

Detailed Description

Definition at line 104 of file Panzer_STK_Interface.hpp.

Member Typedef Documentation

typedef double panzer_stk::STK_Interface::ProcIdData

Definition at line 106 of file Panzer_STK_Interface.hpp.

typedef stk::mesh::Field<double> panzer_stk::STK_Interface::SolutionFieldType

Definition at line 107 of file Panzer_STK_Interface.hpp.

typedef stk::mesh::Field<double,stk::mesh::Cartesian> panzer_stk::STK_Interface::VectorFieldType

Definition at line 108 of file Panzer_STK_Interface.hpp.

typedef stk::mesh::Field<ProcIdData> panzer_stk::STK_Interface::ProcIdFieldType

Definition at line 109 of file Panzer_STK_Interface.hpp.

Constructor & Destructor Documentation

panzer_stk::STK_Interface::STK_Interface ( )

Definition at line 103 of file Panzer_STK_Interface.cpp.

panzer_stk::STK_Interface::STK_Interface ( unsigned dim )

Default constructor

Definition at line 115 of file Panzer_STK_Interface.cpp.

panzer_stk::STK_Interface::STK_Interface ( Teuchos::RCP< stk::mesh::MetaData > metaData )

Definition at line 109 of file Panzer_STK_Interface.cpp.

Member Function Documentation

void panzer_stk::STK_Interface::addElementBlock	(	const std::string &	name,
		const CellTopologyData *	ctData
	)

Add an element block with a string name

Definition at line 1250 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addSideset	(	const std::string &	name,
		const CellTopologyData *	ctData
	)

Add a side set with a string name

Definition at line 126 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addNodeset ( const std::string & name )

Add a node set with a string name

Definition at line 138 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addSolutionField	(	const std::string &	fieldName,
		const std::string &	blockId
	)

Add a solution field

Definition at line 152 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addCellField	(	const std::string &	fieldName,
		const std::string &	blockId
	)

Add a solution field

Definition at line 172 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addMeshCoordFields	(	const std::string &	blockId,
		const std::vector< std::string > &	coordField,
		const std::string &	dispPrefix
	)

Add a solution field for coordinates with a particular prefix, force it to be outputed as a to be mesh displacement field. This is really only relevant for I/O and how the field is stored internally in the mesh.

Parameters

[in]	blockId	Element block to use
[in]	coordPrefix	Prefix for solution coordinate field (assumes using "X","Y","Z" as postfix)
[in]	dispPrefix	Prefix for displacment (output) field

Definition at line 193 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::initialize	(	stk::ParallelMachine	parallelMach,
		bool	setupIO = `true`,
		const bool	buildRefinementSupport = `false`
	)

Initialize the mesh with the current dimension This also calls commit on the meta data causing it to be frozen. Information about elements blocks has to be commited before this. If parallel machine has already been specified through instantiateBulkData that communicator is used. Otherwise a new copy is constructed and will be used through out this mesh object's lifetime.

Parameters

[in]	parallelMach	Communicator
[in]	setupIO	If set to true and IOSS is enabled, the output mesh will be initialized.
[in]	buildRefinementSupport	If true, build percept uniform refinement objects.

Definition at line 237 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::instantiateBulkData ( stk::ParallelMachine parallelMach )

Build a bulk data object but don't do anything with it. If parallel machine has already been specified through initialize that communicator is used. Otherwise a new copy is constructed and will be used by default throughout the lifetime of this object.

Definition at line 350 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::beginModification ( )

Put the bulk data manager in modification mode.

Definition at line 359 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::endModification ( )

Take the bulk data manager out of modification mode.

Definition at line 367 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addNode	(	stk::mesh::EntityId	gid,
		const std::vector< double > &	coord
	)

Add a node to the mesh with a specific set of coordinates to the mesh.

Precondition: coord.size()==getDimension(); isModifiable()==true

Definition at line 423 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addElement	(	const Teuchos::RCP< ElementDescriptor > &	ed,
		stk::mesh::Part *	block
	)

Definition at line 457 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addEdges ( )

Definition at line 480 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addFaces ( )

Definition at line 508 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addEntityToSideset	(	stk::mesh::Entity	entity,
		stk::mesh::Part *	sideset
	)

Addes an entity to a specified side set.

Definition at line 441 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addEntityToNodeset	(	stk::mesh::Entity	entity,
		stk::mesh::Part *	nodeset
	)

Addes an entity to a specified node set.

Definition at line 449 of file Panzer_STK_Interface.cpp.

const VectorFieldType& panzer_stk::STK_Interface::getCoordinatesField ( ) const

inline

Grab the coordinates field

Definition at line 221 of file Panzer_STK_Interface.hpp.

const VectorFieldType& panzer_stk::STK_Interface::getEdgesField ( ) const

inline

Grab the edges field

Definition at line 226 of file Panzer_STK_Interface.hpp.

const VectorFieldType& panzer_stk::STK_Interface::getFacesField ( ) const

inline

Definition at line 229 of file Panzer_STK_Interface.hpp.

const double * panzer_stk::STK_Interface::getNodeCoordinates ( stk::mesh::EntityId nodeId ) const

Look up a global node and get the coordinate.

Definition at line 991 of file Panzer_STK_Interface.cpp.

const double * panzer_stk::STK_Interface::getNodeCoordinates ( stk::mesh::Entity node ) const

Look up a global node and get the coordinate.

Definition at line 997 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getSubcellIndices	(	unsigned	entityRank,
		stk::mesh::EntityId	elementId,
		std::vector< stk::mesh::EntityId > &	subcellIds
	)		const

Get subcell global IDs

Definition at line 1002 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getMyElements ( std::vector< stk::mesh::Entity > & elements ) const

Get a vector of elements owned by this processor

Definition at line 1023 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getMyElements	(	const std::string &	blockID,
		std::vector< stk::mesh::Entity > &	elements
	)		const

Get a vector of elements owned by this processor on a particular block ID

Definition at line 1033 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getNeighborElements ( std::vector< stk::mesh::Entity > & elements ) const

Get a vector of elements that share an edge/face with an owned element. Note that these elements are not owned.

Definition at line 1048 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getNeighborElements	(	const std::string &	blockID,
		std::vector< stk::mesh::Entity > &	elements
	)		const

Get a vector of elements not owned by this processor but in a particular block

Definition at line 1058 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getMySides	(	const std::string &	sideName,
		std::vector< stk::mesh::Entity > &	sides
	)		const

Get Entities corresponding to the side set requested. The Entites in the vector should be a dimension lower then getDimension().

Parameters

[in]	sideName	Name of side set
[in,out]	sides	Vector of entities containing the requested sides.

Definition at line 1072 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getMySides	(	const std::string &	sideName,
		const std::string &	blockName,
		std::vector< stk::mesh::Entity > &	sides
	)		const

Get Entities corresponding to the locally owned part of the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension().

Parameters

[in]	sideName	Name of side set
[in]	blockName	Name of block
[in,out]	sides	Vector of entities containing the requested sides.

Definition at line 1085 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getAllSides	(	const std::string &	sideName,
		std::vector< stk::mesh::Entity > &	sides
	)		const

Get Entities corresponding to the locally owned part of the side set requested. The Entites in the vector should be a dimension lower then getDimension().

Parameters

[in]	sideName	Name of side set
[in,out]	sides	Vector of entities containing the requested sides.

Definition at line 1102 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getAllSides	(	const std::string &	sideName,
		const std::string &	blockName,
		std::vector< stk::mesh::Entity > &	sides
	)		const

Get Entities corresponding to the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension().

Parameters

[in]	sideName	Name of side set
[in]	blockName	Name of block
[in,out]	sides	Vector of entities containing the requested sides.

Definition at line 1114 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getMyNodes	(	const std::string &	sideName,
		const std::string &	blockName,
		std::vector< stk::mesh::Entity > &	nodes
	)		const

Get Entities corresponding to the node set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be of dimension 0.

Parameters

[in]	sideName	Name of side set
[in]	blockName	Name of block
[in,out]	nodes	Vector of entities containing the requested nodes.

Definition at line 1131 of file Panzer_STK_Interface.cpp.

stk::mesh::Entity panzer_stk::STK_Interface::findConnectivityById	(	stk::mesh::Entity	src,
		stk::mesh::EntityRank	tgt_rank,
		unsigned	rel_id
	)		const

Searches for connected entity by rank and relation id. Returns invalid entity on failure.

Parameters

[in]	src	The handle to the source entity (the 'from' part of the relation)
[in]	tgt_rank	The entity rank of relations to search
[in]	rel_id	The id of the relation to search for

Definition at line 538 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::writeToExodus ( const std::string & filename )

Write this mesh and associated fields to the given output file.

Note: This will only write a single timestep at time = 0.

Parameters

[in] filename The name of the output Exodus file.

Definition at line 559 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::setupExodusFile ( const std::string & filename )

Set up an output Exodus file for writing results.

Create an output mesh associated with the given filename and add the fields to it.

Note: No writing is actually done at this stage. That happens with a call to writeToExodus(double timestep).

Parameters

[in] filename The name of the output Exodus file.

Exceptions

<tt>std::logic_error</tt> If the STK_Interface does not yet have a MPI communicator.

Definition at line 573 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::writeToExodus ( double timestep )

Write this mesh and associated fields at the given timestep.

Write this mesh and the current state of the associated fields for time = timestep to the output Exodus file created via setupExodusFile().

Note: setupExodusFile(const std::string& filename) must be called before any invocations of this routine.

Parameters

[in] timestep The simulation time at which you're writing the results.

Definition at line 615 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addGlobalToExodus	(	const std::string &	key,
		const int &	value
	)

Add an int global variable to the information to be written to the Exodus output file.

This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string key.

Note: Data is not actually written to the output Exodus file until writeToExodus() is called.

Parameters

[in]	key	The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to `addGlobalToExodus()`. Repeated calls with identical keys will result in the value associated with the key simply being overwritten.
[in]	value	The value of the global variable you'll be adding.

Definition at line 766 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addGlobalToExodus	(	const std::string &	key,
		const double &	value
	)

Add a double global variable to the information to be written to the Exodus output file.

This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string key.

Note: Data is not actually written to the output Exodus file until writeToExodus() is called.

Parameters

[in]	key	The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to `addGlobalToExodus()`. Repeated calls with identical keys will result in the value associated with the key simply being overwritten.
[in]	value	The value of the global variable you'll be adding.

Definition at line 780 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addGlobalToExodus	(	const std::string &	key,
		const std::vector< int > &	value
	)

Add a std::vector<int> global variable to the information to be written to the Exodus output file.

This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string key.

Note: Data is not actually written to the output Exodus file until writeToExodus() is called.

Parameters

[in]	key	The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to `addGlobalToExodus()`. Repeated calls with identical keys will result in the value associated with the key simply being overwritten.
[in]	value	The value of the global variable you'll be adding.

Definition at line 794 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::addGlobalToExodus	(	const std::string &	key,
		const std::vector< double > &	value
	)

Add a std::vector<double> global variable to the information to be written to the Exodus output file.

This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string key.

Note: Data is not actually written to the output Exodus file until writeToExodus() is called.

Parameters

[in]	key	The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to `addGlobalToExodus()`. Repeated calls with identical keys will result in the value associated with the key simply being overwritten.
[in]	value	The value of the global variable you'll be adding.

Definition at line 809 of file Panzer_STK_Interface.cpp.

Teuchos::RCP< const Teuchos::Comm< int > > panzer_stk::STK_Interface::getComm ( ) const

get the comm associated with this mesh

Definition at line 1556 of file Panzer_STK_Interface.cpp.

Teuchos::RCP<stk::mesh::BulkData> panzer_stk::STK_Interface::getBulkData ( ) const

inline

Definition at line 472 of file Panzer_STK_Interface.hpp.

Teuchos::RCP<stk::mesh::MetaData> panzer_stk::STK_Interface::getMetaData ( ) const

inline

Definition at line 473 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::isWritable ( ) const

Definition at line 817 of file Panzer_STK_Interface.cpp.

bool panzer_stk::STK_Interface::isModifiable ( ) const

inline

Definition at line 477 of file Panzer_STK_Interface.hpp.

unsigned panzer_stk::STK_Interface::getDimension ( ) const

inline

get the dimension

Definition at line 482 of file Panzer_STK_Interface.hpp.

std::size_t panzer_stk::STK_Interface::getNumElementBlocks ( ) const

inline

get the block count

Definition at line 486 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::getElementBlockNames ( std::vector< std::string > & names ) const

Get a vector containing the names of the element blocks. This function always returns the current set of element blocks in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters

[in,out] names Vector of names of the element blocks.

Definition at line 1148 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getSidesetNames ( std::vector< std::string > & name ) const

Get a vector containing the names of the side sets. This function always returns the current set of side sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters

[in,out] names Vector of names of the side sets

Definition at line 1160 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getNodesetNames ( std::vector< std::string > & name ) const

Get a vector containing the names of the node sets. This function always returns the current set of node sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters

[in,out] names Vector of names of the element blocks.

Definition at line 1172 of file Panzer_STK_Interface.cpp.

stk::mesh::Part* panzer_stk::STK_Interface::getOwnedPart ( ) const

inline

Get a pointer to the locally owned part.

Definition at line 517 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::getElementBlockPart ( const std::string & name ) const

inline

get the block count

Definition at line 521 of file Panzer_STK_Interface.hpp.

std::size_t panzer_stk::STK_Interface::getNumSidesets ( ) const

inline

get the side set count

Definition at line 529 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::getSideset ( const std::string & name ) const

inline

Definition at line 532 of file Panzer_STK_Interface.hpp.

std::size_t panzer_stk::STK_Interface::getNumNodesets ( ) const

inline

get the side set count

Definition at line 539 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::getNodeset ( const std::string & name ) const

inline

Definition at line 542 of file Panzer_STK_Interface.hpp.

std::size_t panzer_stk::STK_Interface::getEntityCounts ( unsigned entityRank ) const

get the global counts for the entity of specified rank

Definition at line 962 of file Panzer_STK_Interface.cpp.

stk::mesh::EntityId panzer_stk::STK_Interface::getMaxEntityId ( unsigned entityRank ) const

get max entity ID of type entityRank

Definition at line 970 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getElementsSharingNode	(	stk::mesh::EntityId	nodeId,
		std::vector< stk::mesh::Entity > &	elements
	)		const

get a set of elements sharing a single node

Definition at line 826 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getNodeIdsForElement	(	stk::mesh::Entity	element,
		std::vector< stk::mesh::EntityId > &	nodeIds
	)		const

get a list of node ids for nodes connected to an element

Definition at line 909 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getOwnedElementsSharingNode	(	stk::mesh::Entity	node,
		std::vector< stk::mesh::Entity > &	elements,
		std::vector< int > &	relIds
	)		const

Get set of element sharing a single node and its local node id.

Definition at line 839 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getOwnedElementsSharingNode	(	stk::mesh::EntityId	nodeId,
		std::vector< stk::mesh::Entity > &	elements,
		std::vector< int > &	relIds,
		unsigned int	matchType
	)		const

Get set of element sharing a single node and its local node id.

Definition at line 859 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::getElementsSharingNodes	(	const std::vector< stk::mesh::EntityId >	nodeId,
		std::vector< stk::mesh::Entity > &	elements
	)		const

get a set of elements sharing multiple nodes

Definition at line 877 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::buildSubcells ( )

force the mesh to build subcells: edges and faces

Definition at line 978 of file Panzer_STK_Interface.cpp.

std::size_t panzer_stk::STK_Interface::elementLocalId ( stk::mesh::Entity elmt ) const

Get an elements local index

Definition at line 1182 of file Panzer_STK_Interface.cpp.

std::size_t panzer_stk::STK_Interface::elementLocalId ( stk::mesh::EntityId gid ) const

Get an elements local index

Definition at line 1189 of file Panzer_STK_Interface.cpp.

stk::mesh::EntityId panzer_stk::STK_Interface::elementGlobalId ( std::size_t lid ) const

inline

Get an elements global index

Definition at line 590 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityId panzer_stk::STK_Interface::elementGlobalId ( stk::mesh::Entity elmt ) const

inline

Get an elements global index

Definition at line 595 of file Panzer_STK_Interface.hpp.

unsigned panzer_stk::STK_Interface::entityOwnerRank ( stk::mesh::Entity entity ) const

inline

Get an Entity's parallel owner (process rank)

Definition at line 600 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::isValid ( stk::mesh::Entity entity ) const

inline

Check if entity handle is valid

Definition at line 605 of file Panzer_STK_Interface.hpp.

std::string panzer_stk::STK_Interface::containingBlockId ( stk::mesh::Entity elmt ) const

Get the containing block ID of this element.

Definition at line 1201 of file Panzer_STK_Interface.cpp.

stk::mesh::Field< double > * panzer_stk::STK_Interface::getSolutionField	(	const std::string &	fieldName,
		const std::string &	blockId
	)		const

Get the stk mesh field pointer associated with a particular solution value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.

Definition at line 1209 of file Panzer_STK_Interface.cpp.

stk::mesh::Field< double > * panzer_stk::STK_Interface::getCellField	(	const std::string &	fieldName,
		const std::string &	blockId
	)		const

Get the stk mesh field pointer associated with a particular value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.

Definition at line 1223 of file Panzer_STK_Interface.cpp.

ProcIdFieldType* panzer_stk::STK_Interface::getProcessorIdField ( )

inline

Definition at line 626 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::isInitialized ( ) const

inline

Has initialize been called on this mesh object?

Definition at line 629 of file Panzer_STK_Interface.hpp.

Teuchos::RCP< const std::vector< stk::mesh::Entity > > panzer_stk::STK_Interface::getElementsOrderedByLID ( ) const

Get Vector of element entities ordered by their LID, returns an RCP so that it is easily stored by the caller.

Definition at line 1237 of file Panzer_STK_Interface.cpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::setSolutionFieldData	(	const std::string &	fieldName,
		const std::string &	blockId,
		const std::vector< std::size_t > &	localElementIds,
		const ArrayT &	solutionValues,
		double	scaleValue = `1.0`
	)

Writes a particular field to an array. Notice this is setup to work with the worksets associated with Panzer.

Parameters

[in]	fieldName	Name of field to be filled
[in]	blockId	Name of block this set of elements belongs to
[in]	localElementIds	Local element IDs for this set of solution values
[in]	solutionValues	An two dimensional array object sized by (Cells,Basis Count)

Note: The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 1119 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getSolutionFieldData	(	const std::string &	fieldName,
		const std::string &	blockId,
		const std::vector< std::size_t > &	localElementIds,
		ArrayT &	solutionValues
	)		const

Reads a particular field into an array. Notice this is setup to work with the worksets associated with Panzer.

Parameters

[in]	fieldName	Name of field to be filled
[in]	blockId	Name of block this set of elements belongs to
[in]	localElementIds	Local element IDs for this set of solution values
[in]	solutionValues	An two dimensional array object sized by (Cells,Basis Count)

Note: The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being retrieved are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 1179 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::setCellFieldData	(	const std::string &	fieldName,
		const std::string &	blockId,
		const std::vector< std::size_t > &	localElementIds,
		const ArrayT &	solutionValues,
		double	scaleValue = `1.0`
	)

Writes a particular field to a cell array. Notice this is setup to work with the worksets associated with Panzer.

Parameters

[in]	fieldName	Name of field to be filled
[in]	blockId	Name of block this set of elements belongs to
[in]	localElementIds	Local element IDs for this set of solution values
[in]	solutionValues	A one dimensional array object sized by (Cells)

Note: The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 1209 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices	(	const std::vector< std::size_t > &	localIds,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry.

Parameters

[in]	localIds	Element local IDs to construct vertices
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1227 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices	(	const std::vector< stk::mesh::Entity > &	elements,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry.

Parameters

[in]	elements	Element entities to construct vertices
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1251 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices	(	const std::vector< std::size_t > &	localIds,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry.

Parameters

[in]	localIds	Element local IDs to construct vertices
[in]	eBlock	Element block the elements are in
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1275 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices	(	const std::vector< stk::mesh::Entity > &	elements,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry.

Parameters

[in]	elements	Element entities to construct vertices
[in]	eBlock	Element block the elements are in
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1264 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVerticesNoResize	(	const std::vector< std::size_t > &	localIds,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters

[in]	localIds	Element local IDs to construct vertices
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1293 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVerticesNoResize	(	const std::vector< stk::mesh::Entity > &	elements,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters

[in]	elements	Element entities to construct vertices
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1317 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVerticesNoResize	(	const std::vector< std::size_t > &	localIds,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters

[in]	localIds	Element local IDs to construct vertices
[in]	eBlock	Element block the elements are in
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1341 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVerticesNoResize	(	const std::vector< stk::mesh::Entity > &	elements,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters

[in]	elements	Element entities to construct vertices
[in]	eBlock	Element block the elements are in
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1330 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityRank panzer_stk::STK_Interface::getElementRank ( ) const

inline

Definition at line 785 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityRank panzer_stk::STK_Interface::getSideRank ( ) const

inline

Definition at line 786 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityRank panzer_stk::STK_Interface::getFaceRank ( ) const

inline

Definition at line 787 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityRank panzer_stk::STK_Interface::getEdgeRank ( ) const

inline

Definition at line 788 of file Panzer_STK_Interface.hpp.

stk::mesh::EntityRank panzer_stk::STK_Interface::getNodeRank ( ) const

inline

Definition at line 789 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::initializeFromMetaData ( )

Build fields and parts from the meta data

Definition at line 1268 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::buildLocalElementIDs ( )

Setup local element IDs

Definition at line 1292 of file Panzer_STK_Interface.cpp.

const std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> >& panzer_stk::STK_Interface::getPeriodicBCVector ( ) const

inline

Return a vector containing all the periodic boundary conditions.

Definition at line 802 of file Panzer_STK_Interface.hpp.

std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> >& panzer_stk::STK_Interface::getPeriodicBCVector ( )

inline

Return a vector containing all the periodic boundary conditions.

Definition at line 808 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::addPeriodicBC ( const Teuchos::RCP< const PeriodicBC_MatcherBase > & bc )

inline

Add a periodic boundary condition.

Note: This does not actually change the underlying mesh. The object itself only communciates the matched IDs (currently nodes)

Definition at line 816 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::addPeriodicBCs ( const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > & bc_vec )

inline

Add a set of periodic boundary conditions.

Note: This does not actually change the underlying mesh. The object itself only communciates the matched IDs (currently nodes)

Definition at line 824 of file Panzer_STK_Interface.hpp.

std::pair< Teuchos::RCP< std::vector< std::pair< std::size_t, std::size_t > > >, Teuchos::RCP< std::vector< unsigned int > > > panzer_stk::STK_Interface::getPeriodicNodePairing ( ) const

Definition at line 1379 of file Panzer_STK_Interface.cpp.

bool panzer_stk::STK_Interface::validBlockId ( const std::string & blockId ) const

check for a valid block id

Definition at line 1403 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::print ( std::ostream & os ) const

Print a brief description of the STK mesh to a stream.

Definition at line 1410 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::printMetaData ( std::ostream & os ) const

Print a brief description of the STK mesh to a stream.

Definition at line 1460 of file Panzer_STK_Interface.cpp.

Teuchos::RCP< const shards::CellTopology > panzer_stk::STK_Interface::getCellTopology ( const std::string & eBlock ) const

Get the cell topology from the element block.

Definition at line 1500 of file Panzer_STK_Interface.cpp.

double panzer_stk::STK_Interface::getCurrentStateTime ( ) const

inline

Get the value of the time-stamp the last time this object was written to Exodus (default 0.0)

Note: The initial state time is completely disconnected from the current state time

Definition at line 850 of file Panzer_STK_Interface.hpp.

double panzer_stk::STK_Interface::getInitialStateTime ( ) const

inline

Get the value of the time-stamp when this object was created (default 0.0) or when setInitialStateTime was called.

Note: The initial state time is completely disconnected from the current state time

Definition at line 857 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::setInitialStateTime ( double value )

inline

Set the value of the initial time-stamp

Note: The initial state time is completely disconnected from the current state time

Definition at line 863 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::rebalance ( const Teuchos::ParameterList & params )

Rebalance using zoltan. Note that this will void the local element ids.

Definition at line 1527 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::setBlockWeight	(	const std::string &	blockId,
		double	weight
	)

inline

Set the weight for a particular element block. Larger means more costly to assemble and evaluate.

Definition at line 872 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::setUseFieldCoordinates ( bool useFieldCoordinates )

inline

When coordinates are returned in the getElementVertices method, extract coordinates using a specified field (not the intrinsic coordinates) where available (where unavailable the intrinsic coordinates are used. Note that this does not change the behavior of getNodeCoordinates. This is set to false by default.

Definition at line 881 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::getUseFieldCoordinates ( ) const

inline

Return the use field coordinates flag

Definition at line 885 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::setUseLowerCaseForIO ( bool useLowerCase )

inline

Use lower case (or not) for I/O

Definition at line 889 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::getUseLowerCaseForIO ( ) const

inline

Use lower case (or not) for I/O

Definition at line 893 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices_FromField	(	const std::vector< stk::mesh::Entity > &	elements,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry, note that a coordinate field will be used (if not is available an exception will be thrown).

Parameters

[in]	elements	Element entities to construct vertices
[in]	eBlock	Element block the elements are in
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1451 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices_FromFieldNoResize	(	const std::vector< stk::mesh::Entity > &	elements,
		const std::string &	eBlock,
		ArrayT &	vertices
	)		const

Definition at line 1503 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices_FromCoords	(	const std::vector< stk::mesh::Entity > &	elements,
		ArrayT &	vertices
	)		const

Get vertices associated with a number of elements of the same geometry. This access the true mesh coordinates array.

Parameters

[in]	elements	Element entities to construct vertices
[out]	vertices	Output array that will be sized (`localIds.size()`,#Vertices,#Dim)

Note: If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1359 of file Panzer_STK_Interface.hpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::getElementVertices_FromCoordsNoResize	(	const std::vector< stk::mesh::Entity > &	elements,
		ArrayT &	vertices
	)		const

Definition at line 1407 of file Panzer_STK_Interface.hpp.

void panzer_stk::STK_Interface::refineMesh	(	const int	numberOfLevels,
		const bool	deleteParentElements
	)

Uniformly refine the mesh using Percept

Parameters

[in]	numberOfLevels	Number of uniform refinement levels to apply. Must be >=1.
[in]	deleteParentElements	If true, deletes the parent elements from the mesh to save memory.

Definition at line 1562 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::buildEntityCounts ( )

protected

Compute global entity counts.

Definition at line 920 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::buildMaxEntityIds ( )

protected

Compute global entity counts.

Definition at line 926 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::initializeFieldsInSTK	(	const std::map< std::pair< std::string, std::string >, SolutionFieldType * > &	nameToField,
		bool	setupIO
	)

protected

Initialize STK fields using a map (allocate space for storage and writing) to a specific entity rank.

Definition at line 325 of file Panzer_STK_Interface.cpp.

Teuchos::RCP< Teuchos::MpiComm< int > > panzer_stk::STK_Interface::getSafeCommunicator ( stk::ParallelMachine parallelMach ) const

protected

Build a safely handled Teuchos MPI communicator from a parallel machine. This object asserts ownership of the communicator so that we can gurantee existence so the outer user can do whatever they'd like with the original.

Definition at line 1516 of file Panzer_STK_Interface.cpp.

void panzer_stk::STK_Interface::applyElementLoadBalanceWeights ( )

protected

In a pure local operation apply the user specified block weights for each element block to the field that defines the load balance weighting. This uses the blockWeights_ member to determine the user value that has been set for a particular element block.

Definition at line 1335 of file Panzer_STK_Interface.cpp.

bool panzer_stk::STK_Interface::isMeshCoordField	(	const std::string &	eBlock,
		const std::string &	fieldName,
		int &	axis
	)		const

protected

Determine if a particular field in an element block is a displacement field. Return the displacement field name in the requested argument if so.

Definition at line 1357 of file Panzer_STK_Interface.cpp.

template<typename ArrayT >

void panzer_stk::STK_Interface::setDispFieldData	(	const std::string &	fieldName,
		const std::string &	blockId,
		int	axis,
		const std::vector< std::size_t > &	localElementIds,
		const ArrayT &	solutionValues
	)

protected

Writes a particular field to an array as a coordinate diplacement. Notice this is setup to work with the worksets associated with Panzer.

Parameters

[in]	fieldName	Name of field to be filled
[in]	blockId	Name of block this set of elements belongs to
[in]	dimension	What coordinate axis to write to
[in]	localElementIds	Local element IDs for this set of solution values
[in]	solutionValues	An two dimensional array object sized by (Cells,Basis Count)

Note: The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 1150 of file Panzer_STK_Interface.hpp.

Member Data Documentation

const std::string panzer_stk::STK_Interface::coordsString = "coordinates"

static

Definition at line 936 of file Panzer_STK_Interface.hpp.

const std::string panzer_stk::STK_Interface::nodesString = "nodes"

static

Definition at line 937 of file Panzer_STK_Interface.hpp.

const std::string panzer_stk::STK_Interface::edgesString = "edges"

static

Definition at line 938 of file Panzer_STK_Interface.hpp.

const std::string panzer_stk::STK_Interface::facesString = "faces"

static

Definition at line 939 of file Panzer_STK_Interface.hpp.

std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> > panzer_stk::STK_Interface::periodicBCs_

protected

Definition at line 994 of file Panzer_STK_Interface.hpp.

Teuchos::RCP<stk::mesh::MetaData> panzer_stk::STK_Interface::metaData_

protected

Definition at line 996 of file Panzer_STK_Interface.hpp.

Teuchos::RCP<stk::mesh::BulkData> panzer_stk::STK_Interface::bulkData_

protected

Definition at line 997 of file Panzer_STK_Interface.hpp.

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::elementBlocks_

protected

Definition at line 1003 of file Panzer_STK_Interface.hpp.

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::sidesets_

protected

Definition at line 1004 of file Panzer_STK_Interface.hpp.

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::nodesets_

protected

Definition at line 1005 of file Panzer_STK_Interface.hpp.

std::map<std::string, Teuchos::RCP<shards::CellTopology> > panzer_stk::STK_Interface::elementBlockCT_

protected

Definition at line 1006 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::nodesPart_

protected

Definition at line 1009 of file Panzer_STK_Interface.hpp.

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::nodesPartVec_

protected

Definition at line 1010 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::edgesPart_

protected

Definition at line 1011 of file Panzer_STK_Interface.hpp.

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::edgesPartVec_

protected

Definition at line 1012 of file Panzer_STK_Interface.hpp.

stk::mesh::Part* panzer_stk::STK_Interface::facesPart_

protected

Definition at line 1013 of file Panzer_STK_Interface.hpp.

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::facesPartVec_

protected

Definition at line 1014 of file Panzer_STK_Interface.hpp.

VectorFieldType* panzer_stk::STK_Interface::coordinatesField_

protected

Definition at line 1016 of file Panzer_STK_Interface.hpp.

VectorFieldType* panzer_stk::STK_Interface::edgesField_

protected

Definition at line 1017 of file Panzer_STK_Interface.hpp.

VectorFieldType* panzer_stk::STK_Interface::facesField_

protected

Definition at line 1018 of file Panzer_STK_Interface.hpp.

ProcIdFieldType* panzer_stk::STK_Interface::processorIdField_

protected

Definition at line 1019 of file Panzer_STK_Interface.hpp.

SolutionFieldType* panzer_stk::STK_Interface::loadBalField_

protected

Definition at line 1020 of file Panzer_STK_Interface.hpp.

std::map<std::pair<std::string,std::string>,SolutionFieldType*> panzer_stk::STK_Interface::fieldNameToSolution_

protected

Definition at line 1023 of file Panzer_STK_Interface.hpp.

std::map<std::pair<std::string,std::string>,SolutionFieldType*> panzer_stk::STK_Interface::fieldNameToCellField_

protected

Definition at line 1024 of file Panzer_STK_Interface.hpp.

unsigned panzer_stk::STK_Interface::dimension_

protected

Definition at line 1026 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::initialized_

protected

Definition at line 1028 of file Panzer_STK_Interface.hpp.

std::vector<std::size_t> panzer_stk::STK_Interface::entityCounts_

protected

Definition at line 1031 of file Panzer_STK_Interface.hpp.

std::vector<stk::mesh::EntityId> panzer_stk::STK_Interface::maxEntityId_

protected

Definition at line 1034 of file Panzer_STK_Interface.hpp.

unsigned panzer_stk::STK_Interface::procRank_

protected

Definition at line 1036 of file Panzer_STK_Interface.hpp.

std::size_t panzer_stk::STK_Interface::currentLocalId_

protected

Definition at line 1037 of file Panzer_STK_Interface.hpp.

Teuchos::RCP<Teuchos::MpiComm<int> > panzer_stk::STK_Interface::mpiComm_

protected

Definition at line 1039 of file Panzer_STK_Interface.hpp.

double panzer_stk::STK_Interface::initialStateTime_

protected

Definition at line 1041 of file Panzer_STK_Interface.hpp.

double panzer_stk::STK_Interface::currentStateTime_

protected

Definition at line 1042 of file Panzer_STK_Interface.hpp.

Teuchos::RCP<std::vector<stk::mesh::Entity> > panzer_stk::STK_Interface::orderedElementVector_

mutableprotected

Definition at line 1086 of file Panzer_STK_Interface.hpp.

std::map<std::string,double> panzer_stk::STK_Interface::blockWeights_

protected

Definition at line 1089 of file Panzer_STK_Interface.hpp.

std::unordered_map<stk::mesh::EntityId,std::size_t> panzer_stk::STK_Interface::localIDHash_

protected

Definition at line 1091 of file Panzer_STK_Interface.hpp.

std::map<std::string,std::vector<std::string> > panzer_stk::STK_Interface::meshCoordFields_

protected

Definition at line 1096 of file Panzer_STK_Interface.hpp.

std::map<std::string,std::vector<std::string> > panzer_stk::STK_Interface::meshDispFields_

protected

Definition at line 1097 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::useFieldCoordinates_

protected

Definition at line 1099 of file Panzer_STK_Interface.hpp.

bool panzer_stk::STK_Interface::useLowerCase_

protected

Definition at line 1101 of file Panzer_STK_Interface.hpp.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation