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Xpetra_CrsMatrix.hpp
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1 // @HEADER
2 // *****************************************************************************
3 // Xpetra: A linear algebra interface package
4 //
5 // Copyright 2012 NTESS and the Xpetra contributors.
6 // SPDX-License-Identifier: BSD-3-Clause
7 // *****************************************************************************
8 // @HEADER
9 
10 #ifndef XPETRA_CRSMATRIX_HPP
11 #define XPETRA_CRSMATRIX_HPP
12 
13 /* this file is automatically generated - do not edit (see script/interfaces.py) */
14 
15 #include <Tpetra_KokkosCompat_DefaultNode.hpp>
16 #include "Xpetra_ConfigDefs.hpp"
17 #include "Xpetra_RowMatrix.hpp"
18 #include "Xpetra_DistObject.hpp"
19 #include "Xpetra_CrsGraph.hpp"
20 #include "Xpetra_Vector.hpp"
21 
22 #ifdef HAVE_XPETRA_TPETRA
23 #include <Kokkos_StaticCrsGraph.hpp>
24 #include <KokkosSparse_CrsMatrix.hpp>
25 #endif
26 
27 namespace Xpetra {
28 
29 template <class Scalar,
30  class LocalOrdinal,
31  class GlobalOrdinal,
32  class Node = Tpetra::KokkosClassic::DefaultNode::DefaultNodeType>
33 class CrsMatrix
34  : public RowMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>,
35  public DistObject<char, LocalOrdinal, GlobalOrdinal, Node> {
36  public:
37  typedef Scalar scalar_type;
38  typedef LocalOrdinal local_ordinal_type;
39  typedef GlobalOrdinal global_ordinal_type;
40  typedef Node node_type;
41 
43 
44 
46  virtual ~CrsMatrix() {}
47 
49 
51 
53  virtual void
54  insertGlobalValues(GlobalOrdinal globalRow,
55  const ArrayView<const GlobalOrdinal> &cols,
56  const ArrayView<const Scalar> &vals) = 0;
57 
59  virtual void insertLocalValues(LocalOrdinal localRow, const ArrayView<const LocalOrdinal> &cols, const ArrayView<const Scalar> &vals) = 0;
60 
62  virtual void replaceGlobalValues(GlobalOrdinal globalRow, const ArrayView<const GlobalOrdinal> &cols, const ArrayView<const Scalar> &vals) = 0;
63 
65  virtual void replaceLocalValues(LocalOrdinal localRow, const ArrayView<const LocalOrdinal> &cols, const ArrayView<const Scalar> &vals) = 0;
66 
68  virtual void setAllToScalar(const Scalar &alpha) = 0;
69 
71  virtual void scale(const Scalar &alpha) = 0;
72 
83  virtual void allocateAllValues(size_t numNonZeros, ArrayRCP<size_t> &rowptr, ArrayRCP<LocalOrdinal> &colind, ArrayRCP<Scalar> &values) = 0;
84 
86  virtual void setAllValues(const ArrayRCP<size_t> &rowptr, const ArrayRCP<LocalOrdinal> &colind, const ArrayRCP<Scalar> &values) = 0;
87 
89  virtual void getAllValues(ArrayRCP<const size_t> &rowptr, ArrayRCP<const LocalOrdinal> &colind, ArrayRCP<const Scalar> &values) const = 0;
90 
92  virtual void getAllValues(ArrayRCP<Scalar> &values) = 0;
93 
95 
97 
98 
100  virtual void resumeFill(const RCP<ParameterList> &params = null) = 0;
101 
103  virtual void fillComplete(const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &domainMap, const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &rangeMap, const RCP<ParameterList> &params = null) = 0;
104 
106  virtual void fillComplete(const RCP<ParameterList> &params = null) = 0;
107 
109  virtual void replaceDomainMapAndImporter(const Teuchos::RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &newDomainMap, Teuchos::RCP<const Import<LocalOrdinal, GlobalOrdinal, Node> > &newImporter) = 0;
110 
112  virtual void expertStaticFillComplete(const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &domainMap,
113  const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &rangeMap,
114  const RCP<const Import<LocalOrdinal, GlobalOrdinal, Node> > &importer = Teuchos::null,
115  const RCP<const Export<LocalOrdinal, GlobalOrdinal, Node> > &exporter = Teuchos::null,
116  const RCP<ParameterList> &params = Teuchos::null) = 0;
118 
120 
121 
123  virtual const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > getRowMap() const = 0;
124 
126  virtual const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > getColMap() const = 0;
127 
129  virtual RCP<const CrsGraph<LocalOrdinal, GlobalOrdinal, Node> > getCrsGraph() const = 0;
130 
132  virtual global_size_t getGlobalNumRows() const = 0;
133 
135  virtual global_size_t getGlobalNumCols() const = 0;
136 
138  virtual size_t getLocalNumRows() const = 0;
139 
141  virtual global_size_t getGlobalNumEntries() const = 0;
142 
144  virtual size_t getLocalNumEntries() const = 0;
145 
147  virtual size_t getNumEntriesInLocalRow(LocalOrdinal localRow) const = 0;
148 
150  virtual size_t getNumEntriesInGlobalRow(GlobalOrdinal globalRow) const = 0;
151 
153  virtual size_t getGlobalMaxNumRowEntries() const = 0;
154 
156  virtual size_t getLocalMaxNumRowEntries() const = 0;
157 
159  virtual bool isLocallyIndexed() const = 0;
160 
162  virtual bool isGloballyIndexed() const = 0;
163 
165  virtual bool isFillComplete() const = 0;
166 
168  virtual bool isFillActive() const = 0;
169 
171  virtual typename ScalarTraits<Scalar>::magnitudeType getFrobeniusNorm() const = 0;
172 
174  virtual bool supportsRowViews() const = 0;
175 
177  virtual void getGlobalRowView(GlobalOrdinal GlobalRow, ArrayView<const GlobalOrdinal> &indices, ArrayView<const Scalar> &values) const = 0;
178 
180  virtual void getGlobalRowCopy(GlobalOrdinal GlobalRow, const ArrayView<GlobalOrdinal> &indices, const ArrayView<Scalar> &values, size_t &numEntries) const = 0;
181 
183  virtual void getLocalRowView(LocalOrdinal LocalRow, ArrayView<const LocalOrdinal> &indices, ArrayView<const Scalar> &values) const = 0;
184 
187 
189  virtual void getLocalDiagOffsets(Teuchos::ArrayRCP<size_t> &offsets) const = 0;
190 
192  virtual void getLocalDiagCopy(Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &diag, const Teuchos::ArrayView<const size_t> &offsets) const = 0;
193 
195  virtual void getLocalDiagCopy(Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &diag, const Kokkos::View<const size_t *, typename Node::device_type, Kokkos::MemoryUnmanaged> &offsets) const = 0;
196 
199 
202 
205 
206  virtual void removeEmptyProcessesInPlace(const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > &newMap) = 0;
207 
209  virtual bool haveGlobalConstants() const = 0;
210 
212 
214 
215 
228  virtual void apply(const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &X, MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &Y, Teuchos::ETransp mode = Teuchos::NO_TRANS, Scalar alpha = ScalarTraits<Scalar>::one(), Scalar beta = ScalarTraits<Scalar>::zero()) const = 0;
229 
247  virtual void apply(const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &X, MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> &Y, Teuchos::ETransp mode, Scalar alpha, Scalar beta, bool sumInterfaceValues, const RCP<Import<LocalOrdinal, GlobalOrdinal, Node> > &regionInterfaceImporter, const Teuchos::ArrayRCP<LocalOrdinal> &regionInterfaceLIDs) const = 0;
248 
250  virtual const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > getDomainMap() const = 0;
251 
253  virtual const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> > getRangeMap() const = 0;
254 
256 
258 
259 
261  virtual std::string description() const = 0;
262 
264  virtual void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel = Teuchos::Describable::verbLevel_default) const = 0;
265 
267 
269 
270  virtual void setObjectLabel(const std::string &objectLabel) = 0;
272 
274 
275 #ifdef HAVE_XPETRA_TPETRA
276  using impl_scalar_type = typename Kokkos::ArithTraits<Scalar>::val_type;
277  using execution_space = typename node_type::device_type;
278 
279  // that is the local_graph_type in Tpetra::CrsGraph...
280  using local_graph_type = Kokkos::StaticCrsGraph<LocalOrdinal,
281  Kokkos::LayoutLeft,
283  void,
284  size_t>;
288  using local_matrix_type = KokkosSparse::CrsMatrix<impl_scalar_type, LocalOrdinal, execution_space, void,
289  typename local_graph_type::size_type>;
290 
291  virtual local_matrix_type getLocalMatrixDevice() const = 0;
292  virtual typename local_matrix_type::HostMirror getLocalMatrixHost() const = 0;
293 
294  virtual void setAllValues(const typename local_matrix_type::row_map_type &ptr,
295  const typename local_graph_type::entries_type::non_const_type &ind,
296  const typename local_matrix_type::values_type &val) = 0;
297 #else
298 #ifdef __GNUC__
299 #warning "Xpetra Kokkos interface for CrsMatrix is enabled (HAVE_XPETRA_KOKKOS_REFACTOR) but Tpetra is disabled. The Kokkos interface needs Tpetra to be enabled, too."
300 #endif
301 #endif
302 
304 
305  // Adding these functions by hand, as they're in the skip list.
306 
308  virtual size_t getLocalNumCols() const = 0;
309 
311  virtual void getLocalRowCopy(LocalOrdinal LocalRow, const ArrayView<LocalOrdinal> &Indices, const ArrayView<Scalar> &Values, size_t &NumEntries) const = 0;
312 
314  virtual bool hasMatrix() const = 0;
315 
317  virtual LocalOrdinal GetStorageBlockSize() const = 0;
318 
323 
324 }; // CrsMatrix class
325 
326 } // namespace Xpetra
327 
328 #define XPETRA_CRSMATRIX_SHORT
329 #endif // XPETRA_CRSMATRIX_HPP
virtual ScalarTraits< Scalar >::magnitudeType getFrobeniusNorm() const =0
Returns the Frobenius norm of the matrix.
virtual void expertStaticFillComplete(const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &domainMap, const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &rangeMap, const RCP< const Import< LocalOrdinal, GlobalOrdinal, Node > > &importer=Teuchos::null, const RCP< const Export< LocalOrdinal, GlobalOrdinal, Node > > &exporter=Teuchos::null, const RCP< ParameterList > &params=Teuchos::null)=0
Expert static fill complete.
virtual RCP< const CrsGraph< LocalOrdinal, GlobalOrdinal, Node > > getCrsGraph() const =0
Returns the CrsGraph associated with this matrix.
virtual global_size_t getGlobalNumRows() const =0
Number of global elements in the row map of this matrix.
virtual void apply(const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &X, MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &Y, Teuchos::ETransp mode=Teuchos::NO_TRANS, Scalar alpha=ScalarTraits< Scalar >::one(), Scalar beta=ScalarTraits< Scalar >::zero()) const =0
Computes the sparse matrix-multivector multiplication.
virtual void replaceDiag(const Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag)=0
Replace the diagonal entries of the matrix.
virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > getRowMap() const =0
Returns the Map that describes the row distribution in this matrix.
virtual void residual(const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &X, const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &B, MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &R) const =0
Compute a residual R = B - (*this) * X.
virtual void replaceLocalValues(LocalOrdinal localRow, const ArrayView< const LocalOrdinal > &cols, const ArrayView< const Scalar > &vals)=0
Replace matrix entries, using local IDs.
virtual void removeEmptyProcessesInPlace(const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &newMap)=0
virtual size_t getLocalNumCols() const =0
Returns the number of matrix columns owned on the calling node.
virtual void rightScale(const Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &x)=0
Right scale matrix using the given vector entries.
GlobalOrdinal global_ordinal_type
virtual void scale(const Scalar &alpha)=0
Scale the current values of a matrix, this = alpha*this.
virtual bool hasMatrix() const =0
Does this have an underlying matrix.
virtual void fillComplete(const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &domainMap, const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &rangeMap, const RCP< ParameterList > &params=null)=0
Signal that data entry is complete, specifying domain and range maps.
virtual void insertGlobalValues(GlobalOrdinal globalRow, const ArrayView< const GlobalOrdinal > &cols, const ArrayView< const Scalar > &vals)=0
Insert matrix entries, using global IDs.
virtual size_t getNumEntriesInGlobalRow(GlobalOrdinal globalRow) const =0
Returns the current number of entries in the specified global row.
virtual size_t getLocalNumEntries() const =0
Returns the local number of entries in this matrix.
virtual size_t getNumEntriesInLocalRow(LocalOrdinal localRow) const =0
Returns the current number of entries on this node in the specified local row.
virtual bool isLocallyIndexed() const =0
If matrix indices are in the local range, this function returns true. Otherwise, this function return...
virtual void setAllToScalar(const Scalar &alpha)=0
Set all matrix entries equal to scalarThis.
LocalOrdinal local_ordinal_type
virtual void setAllValues(const ArrayRCP< size_t > &rowptr, const ArrayRCP< LocalOrdinal > &colind, const ArrayRCP< Scalar > &values)=0
Sets the 1D pointer arrays of the graph.
virtual void getGlobalRowCopy(GlobalOrdinal GlobalRow, const ArrayView< GlobalOrdinal > &indices, const ArrayView< Scalar > &values, size_t &numEntries) const =0
Extract a list of entries in a specified global row of this matrix. Put into pre-allocated storage...
virtual std::string description() const =0
A simple one-line description of this object.
virtual void allocateAllValues(size_t numNonZeros, ArrayRCP< size_t > &rowptr, ArrayRCP< LocalOrdinal > &colind, ArrayRCP< Scalar > &values)=0
Allocates and returns ArrayRCPs of the Crs arrays — This is an Xpetra-only routine.
virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > getDomainMap() const =0
Returns the Map associated with the domain of this operator. This will be null until fillComplete() i...
virtual void getLocalRowView(LocalOrdinal LocalRow, ArrayView< const LocalOrdinal > &indices, ArrayView< const Scalar > &values) const =0
Extract a const, non-persisting view of local indices in a specified row of the matrix.
virtual global_size_t getGlobalNumCols() const =0
Number of global columns in the matrix.
Kokkos::StaticCrsGraph< int, Kokkos::LayoutLeft, execution_space, void, size_t > local_graph_type
virtual bool supportsRowViews() const =0
Returns true if getLocalRowView() and getGlobalRowView() are valid for this class.
virtual void replaceGlobalValues(GlobalOrdinal globalRow, const ArrayView< const GlobalOrdinal > &cols, const ArrayView< const Scalar > &vals)=0
Replace matrix entries, using global IDs.
virtual void getLocalRowCopy(LocalOrdinal LocalRow, const ArrayView< LocalOrdinal > &Indices, const ArrayView< Scalar > &Values, size_t &NumEntries) const =0
Extract a list of entries in a specified local row of the matrix. Put into storage allocated by calli...
virtual void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const =0
Print the object with some verbosity level to an FancyOStream object.
virtual void replaceDomainMapAndImporter(const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &newDomainMap, Teuchos::RCP< const Import< LocalOrdinal, GlobalOrdinal, Node > > &newImporter)=0
Replaces the current domainMap and importer with the user-specified objects.
virtual void resumeFill(const RCP< ParameterList > &params=null)=0
virtual size_t getLocalMaxNumRowEntries() const =0
Returns the maximum number of entries across all rows/columns on this node.
virtual local_matrix_type::HostMirror getLocalMatrixHost() const =0
virtual void insertLocalValues(LocalOrdinal localRow, const ArrayView< const LocalOrdinal > &cols, const ArrayView< const Scalar > &vals)=0
Insert matrix entries, using local IDs.
virtual bool haveGlobalConstants() const =0
Returns true if globalConstants have been computed; false otherwise.
typename Kokkos::ArithTraits< double >::val_type impl_scalar_type
size_t global_size_t
Global size_t object.
virtual size_t getLocalNumRows() const =0
Returns the number of matrix rows owned on the calling node.
virtual global_size_t getGlobalNumEntries() const =0
Returns the global number of entries in this matrix.
virtual size_t getGlobalMaxNumRowEntries() const =0
Returns the maximum number of entries across all rows/columns on all nodes.
virtual void getLocalDiagCopy(Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag) const =0
Get a copy of the diagonal entries owned by this node, with local row indices.
virtual ~CrsMatrix()
Destructor.
virtual void setObjectLabel(const std::string &objectLabel)=0
virtual bool isFillComplete() const =0
Returns true if the matrix is in compute mode, i.e. if fillComplete() has been called.
virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > getColMap() const =0
Returns the Map that describes the column distribution in this matrix.
virtual local_matrix_type getLocalMatrixDevice() const =0
virtual void getLocalDiagOffsets(Teuchos::ArrayRCP< size_t > &offsets) const =0
Get offsets of the diagonal entries in the matrix.
virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > getRangeMap() const =0
Returns the Map associated with the range of this operator, which must be compatible with Y...
virtual bool isGloballyIndexed() const =0
If matrix indices are in the global range, this function returns true. Otherwise, this function retur...
KokkosSparse::CrsMatrix< impl_scalar_type, int, execution_space, void, typename local_graph_type::size_type > local_matrix_type
The specialization of Kokkos::CrsMatrix that represents the part of the sparse matrix on each MPI pro...
virtual bool isFillActive() const =0
Returns true if the matrix is in edit mode.
virtual LocalOrdinal GetStorageBlockSize() const =0
Returns the block size of the storage mechanism, which is usually 1, except for Tpetra::BlockCrsMatri...
virtual void getAllValues(ArrayRCP< const size_t > &rowptr, ArrayRCP< const LocalOrdinal > &colind, ArrayRCP< const Scalar > &values) const =0
Gets the 1D pointer arrays of the graph.
virtual void leftScale(const Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &x)=0
Left scale matrix using the given vector entries.
virtual void getGlobalRowView(GlobalOrdinal GlobalRow, ArrayView< const GlobalOrdinal > &indices, ArrayView< const Scalar > &values) const =0
Extract a const, non-persisting view of global indices in a specified row of the matrix.