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Tpetra parallel linear algebra
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Tpetra parallel linear algebra
Version of the Day
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Sparse matrix that presents a row-oriented interface that lets users read or modify entries. More...
#include <Tpetra_FECrsMatrix_decl.hpp>
Public Types | |
Typedefs | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::scalar_type | scalar_type |
| This class' first template parameter; the type of each entry in the matrix. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::impl_scalar_type | impl_scalar_type |
The type used internally in place of Scalar. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_ordinal_type | local_ordinal_type |
| This class' second template parameter; the type of local indices. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::global_ordinal_type | global_ordinal_type |
| This class' third template parameter; the type of global indices. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::node_type | node_type |
| This class' fourth template parameter; the Kokkos device type. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::device_type | device_type |
| The Kokkos device type. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::execution_space | execution_space |
| The Kokkos execution space. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::mag_type | mag_type |
| Type of a norm result. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::map_type | map_type |
| The Map specialization suitable for this CrsMatrix specialization. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::import_type | import_type |
| The Import specialization suitable for this CrsMatrix specialization. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::export_type | export_type |
| The Export specialization suitable for this CrsMatrix specialization. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::crs_graph_type | crs_graph_type |
| The CrsGraph specialization suitable for this CrsMatrix specialization. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > ::local_graph_device_type | local_graph_device_type |
| The part of the sparse matrix's graph on each MPI process. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > ::local_matrix_device_type | local_matrix_device_type |
| The specialization of Kokkos::CrsMatrix that represents the part of the sparse matrix for each MPI process on device. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_matrix_host_type | local_matrix_host_type |
| The specialization of Kokkos::CrsMatrix that represents the part of the sparse matrix for each MPI process on host. More... | |
| typedef CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > | crs_matrix_type |
| Parent CrsMatrix type using the same scalars. More... | |
| typedef FECrsGraph < LocalOrdinal, GlobalOrdinal, Node > | fe_crs_graph_type |
| The CrsGraph specialization suitable for this CrsMatrix specialization. More... | |
Typedefs | |
| using | memory_space = typename device_type::memory_space |
| The Kokkos memory space. More... | |
| using | row_matrix_type = RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > |
| The RowMatrix representing the base class of CrsMatrix. More... | |
| using | local_graph_host_type = typename crs_graph_type::local_graph_host_type |
| using | local_multiply_op_type = LocalCrsMatrixOperator< scalar_type, scalar_type, device_type > |
The type of the local matrix-vector operator (a wrapper of KokkosSparse::CrsMatrix ) More... | |
| using | row_ptrs_device_view_type = typename row_matrix_type::row_ptrs_device_view_type |
| using | row_ptrs_host_view_type = typename row_matrix_type::row_ptrs_host_view_type |
| using | local_inds_device_view_type = typename row_matrix_type::local_inds_device_view_type |
| using | local_inds_host_view_type = typename row_matrix_type::local_inds_host_view_type |
| using | nonconst_local_inds_host_view_type = typename row_matrix_type::nonconst_local_inds_host_view_type |
| using | global_inds_device_view_type = typename row_matrix_type::global_inds_device_view_type |
| using | global_inds_host_view_type = typename row_matrix_type::global_inds_host_view_type |
| using | nonconst_global_inds_host_view_type = typename row_matrix_type::nonconst_global_inds_host_view_type |
| using | values_device_view_type = typename row_matrix_type::values_device_view_type |
| using | values_host_view_type = typename row_matrix_type::values_host_view_type |
| using | nonconst_values_host_view_type = typename row_matrix_type::nonconst_values_host_view_type |
Typedefs | |
| using | packet_type = typename::Kokkos::ArithTraits< char >::val_type |
| The type of each datum being sent or received in an Import or Export. More... | |
Public Member Functions | |
| local_matrix_host_type::values_type::const_type | getLocalValuesHost (Access::ReadOnlyStruct s) const |
| Get the Kokkos local values on host, read only. More... | |
| local_matrix_host_type::values_type | getLocalValuesHost (Access::ReadWriteStruct s) |
| Get the Kokkos local values on host, read write. More... | |
| local_matrix_host_type::values_type | getLocalValuesHost (Access::OverwriteAllStruct s) |
| Get the Kokkos local values on host, overwrite all. More... | |
| local_matrix_device_type::values_type::const_type | getLocalValuesDevice (Access::ReadOnlyStruct s) const |
| Get the Kokkos local values on device, read only. More... | |
| local_matrix_device_type::values_type | getLocalValuesDevice (Access::ReadWriteStruct s) |
| Get the Kokkos local values on device, read write. More... | |
| local_matrix_device_type::values_type | getLocalValuesDevice (Access::OverwriteAllStruct s) |
| Get the Kokkos local values on device, overwrite all. More... | |
| void | importAndFillComplete (Teuchos::RCP< CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > > &destMatrix, const import_type &importer, const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) const |
Import from this to the given destination matrix, and make the result fill complete. More... | |
| void | importAndFillComplete (Teuchos::RCP< CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > > &destMatrix, const import_type &rowImporter, const import_type &domainImporter, const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms) const |
Import from this to the given destination matrix, and make the result fill complete. More... | |
| void | exportAndFillComplete (Teuchos::RCP< CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > > &destMatrix, const export_type &exporter, const Teuchos::RCP< const map_type > &domainMap=Teuchos::null, const Teuchos::RCP< const map_type > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) const |
Export from this to the given destination matrix, and make the result fill complete. More... | |
| void | exportAndFillComplete (Teuchos::RCP< CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > > &destMatrix, const export_type &rowExporter, const export_type &domainExporter, const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms) const |
Export from this to the given destination matrix, and make the result fill complete. More... | |
| bool | haveGlobalConstants () const |
| Returns true if globalConstants have been computed; false otherwise. More... | |
Constructors and destructor | |
| FECrsMatrix (const Teuchos::RCP< const fe_crs_graph_type > &graph, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) | |
| Constructor specifying one or two previously constructed graphs. More... | |
| FECrsMatrix (const FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &)=delete | |
| Copy constructor (forbidden). More... | |
| FECrsMatrix (FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &&)=delete | |
| Move constructor (forbidden). More... | |
| FECrsMatrix & | operator= (const FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &)=delete |
| Copy assignment (forbidden). More... | |
| FECrsMatrix & | operator= (FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &&)=delete |
| Move assignment (forbidden). More... | |
| virtual | ~FECrsMatrix ()=default |
| Destructor (virtual for memory safety of derived classes). More... | |
Transformational methods | |
| void | resumeFill (const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Resume operations that may change the values or structure of the matrix. More... | |
| void | fillComplete (const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Tell the matrix that you are done changing its structure or values, and that you are ready to do computational kernels (e.g., sparse matrix-vector multiply) with it. More... | |
| void | fillComplete (const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Tell the matrix that you are done changing its structure or values, and that you are ready to do computational kernels (e.g., sparse matrix-vector multiply) with it. Set default domain and range Maps. More... | |
| void | expertStaticFillComplete (const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< const import_type > &importer=Teuchos::null, const Teuchos::RCP< const export_type > &exporter=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Perform a fillComplete on a matrix that already has data. More... | |
| void | replaceColMap (const Teuchos::RCP< const map_type > &newColMap) |
| Replace the matrix's column Map with the given Map. More... | |
| void | reindexColumns (crs_graph_type *const graph, const Teuchos::RCP< const map_type > &newColMap, const Teuchos::RCP< const import_type > &newImport=Teuchos::null, const bool sortEachRow=true) |
| Reindex the column indices in place, and replace the column Map. Optionally, replace the Import object as well. More... | |
| void | replaceDomainMap (const Teuchos::RCP< const map_type > &newDomainMap) |
| Replace the current domain Map with the given objects. More... | |
| void | replaceDomainMapAndImporter (const Teuchos::RCP< const map_type > &newDomainMap, Teuchos::RCP< const import_type > &newImporter) |
| Replace the current domain Map and Import with the given objects. More... | |
| void | replaceRangeMap (const Teuchos::RCP< const map_type > &newRangeMap) |
| Replace the current range Map with the given objects. More... | |
| void | replaceRangeMapAndExporter (const Teuchos::RCP< const map_type > &newRangeMap, Teuchos::RCP< const export_type > &newExporter) |
| Replace the current Range Map and Export with the given objects. More... | |
| virtual void | removeEmptyProcessesInPlace (const Teuchos::RCP< const map_type > &newMap) override |
| Remove processes owning zero rows from the Maps and their communicator. More... | |
Methods for use only by experts | |
| virtual void | removeEmptyProcessesInPlace (const Teuchos::RCP< const map_type > &newMap) |
| Remove processes which contain no entries in this object's Map. More... | |
Extraction Methods | |
| virtual void | getGlobalRowCopy (GlobalOrdinal GlobalRow, nonconst_global_inds_host_view_type &Indices, nonconst_values_host_view_type &Values, size_t &NumEntries) const =0 |
| Get a copy of the given global row's entries. More... | |
| virtual void | getLocalRowCopy (LocalOrdinal LocalRow, nonconst_local_inds_host_view_type &Indices, nonconst_values_host_view_type &Values, size_t &NumEntries) const =0 |
| Get a copy of the given local row's entries. More... | |
| virtual void | getGlobalRowView (GlobalOrdinal GlobalRow, global_inds_host_view_type &indices, values_host_view_type &values) const =0 |
| Get a constant, nonpersisting, globally indexed view of the given row of the matrix. More... | |
| virtual void | getLocalRowView (LocalOrdinal LocalRow, local_inds_host_view_type &indices, values_host_view_type &values) const =0 |
| Get a constant, nonpersisting, locally indexed view of the given row of the matrix. More... | |
Local apply | |
| void | localApply (const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &X, MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &Y, const Teuchos::ETransp mode=Teuchos::NO_TRANS, const Scalar &alpha=Teuchos::ScalarTraits< Scalar >::one(), const Scalar &beta=Teuchos::ScalarTraits< Scalar >::zero()) const |
| Compute the local part of a sparse matrix-(Multi)Vector multiply. More... | |
| template<class T > | |
| Teuchos::RCP< CrsMatrix< T, LocalOrdinal, GlobalOrdinal, Node > > | convert () const |
Return another CrsMatrix with the same entries, but converted to a different Scalar type T. More... | |
Methods implementing Operator | |
| void | apply (const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &X, MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &Y, Teuchos::ETransp mode=Teuchos::NO_TRANS, Scalar alpha=Teuchos::ScalarTraits< Scalar >::one(), Scalar beta=Teuchos::ScalarTraits< Scalar >::zero()) const override |
| Compute a sparse matrix-MultiVector multiply. More... | |
| bool | hasTransposeApply () const override |
| Whether apply() allows applying the transpose or conjugate transpose. More... | |
| Teuchos::RCP< const map_type > | getDomainMap () const override |
| The domain Map of this matrix. More... | |
| Teuchos::RCP< const map_type > | getRangeMap () const override |
| The range Map of this matrix. More... | |
Other "apply"-like methods | |
| virtual Teuchos::RCP < RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > > | add (const Scalar &alpha, const RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &A, const Scalar &beta, const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &domainMap, const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms) const override |
Implementation of RowMatrix::add: return alpha*A + beta*this. More... | |
Implementation of Teuchos::Describable interface | |
| std::string | description () const override |
| A one-line description of this object. More... | |
| void | describe (Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const override |
| Print this object with the given verbosity level to the given output stream. More... | |
Implementation of Packable interface | |
| virtual void | pack (const Teuchos::ArrayView< const LocalOrdinal > &exportLIDs, Teuchos::Array< char > &exports, const Teuchos::ArrayView< size_t > &numPacketsPerLID, size_t &constantNumPackets) const |
| Pack this object's data for an Import or Export. More... | |
Pure virtual functions to be overridden by subclasses. | |
| virtual bool | hasDiagonal () const |
| Whether this operator can return its diagonal. More... | |
Public methods for redistributing data | |
| void | doImport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| Import data into this object using an Import object ("forward mode"). More... | |
| void | doImport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| Import data into this object using an Export object ("reverse mode"). More... | |
| void | doExport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| Export data into this object using an Export object ("forward mode"). More... | |
| void | doExport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| Export data into this object using an Import object ("reverse mode"). More... | |
| void | beginImport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| void | beginImport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| void | beginExport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| void | beginExport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| void | endImport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| void | endImport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| void | endExport (const SrcDistObject &source, const Export< LocalOrdinal, GlobalOrdinal, Node > &exporter, const CombineMode CM, const bool restrictedMode=false) |
| void | endExport (const SrcDistObject &source, const Import< LocalOrdinal, GlobalOrdinal, Node > &importer, const CombineMode CM, const bool restrictedMode=false) |
| bool | transferArrived () const |
| Whether the data from an import/export operation has arrived, and is ready for the unpack and combine step. More... | |
Attribute accessor methods | |
| bool | isDistributed () const |
| Whether this is a globally distributed object. More... | |
| virtual Teuchos::RCP< const map_type > | getMap () const |
| The Map describing the parallel distribution of this object. More... | |
I/O methods | |
| void | print (std::ostream &os) const |
| Print this object to the given output stream. More... | |
Protected Member Functions | |
| virtual void | insertGlobalValuesImpl (crs_graph_type &graph, RowInfo &rowInfo, const GlobalOrdinal gblColInds[], const impl_scalar_type vals[], const size_t numInputEnt) |
| Common implementation detail of insertGlobalValues and insertGlobalValuesFiltered. More... | |
| void | allocateValues (ELocalGlobal lg, GraphAllocationStatus gas, const bool verbose) |
| Allocate values (and optionally indices) using the Node. More... | |
| void | sortAndMergeIndicesAndValues (const bool sorted, const bool merged) |
| Sort and merge duplicate local column indices in all rows on the calling process, along with their corresponding values. More... | |
| Teuchos::RCP< MV > | getColumnMapMultiVector (const MV &X_domainMap, const bool force=false) const |
| Create a (or fetch a cached) column Map MultiVector. More... | |
| Teuchos::RCP< MV > | getRowMapMultiVector (const MV &Y_rangeMap, const bool force=false) const |
| Create a (or fetch a cached) row Map MultiVector. More... | |
| void | applyNonTranspose (const MV &X_in, MV &Y_in, Scalar alpha, Scalar beta) const |
Special case of apply() for mode == Teuchos::NO_TRANS. More... | |
| void | applyTranspose (const MV &X_in, MV &Y_in, const Teuchos::ETransp mode, Scalar alpha, Scalar beta) const |
Special case of apply() for mode != Teuchos::NO_TRANS. More... | |
| values_dualv_type::t_host::const_type | getValuesViewHost (const RowInfo &rowinfo) const |
| Get a const Host view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow). More... | |
| values_dualv_type::t_dev::const_type | getValuesViewDevice (const RowInfo &rowinfo) const |
| Get a const Device view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow). More... | |
| values_dualv_type::t_host | getValuesViewHostNonConst (const RowInfo &rowinfo) |
| Get a non-const Host view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow). More... | |
| values_dualv_type::t_dev | getValuesViewDeviceNonConst (const RowInfo &rowinfo) |
| Get a non-const Device view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow). More... | |
| void | swap (CrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node > &matrix) |
| Swaps the data from *this with the data and maps from crsMatrix. More... | |
| void | fillLocalMatrix (const Teuchos::RCP< Teuchos::ParameterList > ¶ms) |
| Fill data into the local matrix. More... | |
| void | fillLocalGraphAndMatrix (const Teuchos::RCP< Teuchos::ParameterList > ¶ms) |
| Fill data into the local graph and matrix. More... | |
| void | checkInternalState () const |
| Check that this object's state is sane; throw if it's not. More... | |
| virtual size_t | constantNumberOfPackets () const |
| Whether the implementation's instance promises always to have a constant number of packets per LID (local index), and if so, how many packets per LID there are. More... | |
| virtual void | doTransfer (const SrcDistObject &src, const ::Tpetra::Details::Transfer< local_ordinal_type, global_ordinal_type, node_type > &transfer, const char modeString[], const ReverseOption revOp, const CombineMode CM, const bool restrictedMode) |
| Redistribute data across (MPI) processes. More... | |
| virtual bool | reallocArraysForNumPacketsPerLid (const size_t numExportLIDs, const size_t numImportLIDs) |
| Reallocate numExportPacketsPerLID_ and/or numImportPacketsPerLID_, if necessary. More... | |
| void | beginTransfer (const SrcDistObject &src, const ::Tpetra::Details::Transfer< local_ordinal_type, global_ordinal_type, node_type > &transfer, const char modeString[], const ReverseOption revOp, const CombineMode CM, const bool restrictedMode) |
| Implementation detail of doTransfer. More... | |
Static Protected Member Functions | |
| static size_t | mergeRowIndicesAndValues (size_t rowLen, local_ordinal_type *cols, impl_scalar_type *vals) |
| Merge duplicate row indices in the given row, along with their corresponding values. More... | |
Protected Attributes | |
| Teuchos::RCP< MV > | importMV_ |
| Column Map MultiVector used in apply(). More... | |
| Teuchos::RCP< MV > | exportMV_ |
| Row Map MultiVector used in apply(). More... | |
| Details::EStorageStatus | storageStatus_ |
| Status of the matrix's storage, when not in a fill-complete state. More... | |
| bool | fillComplete_ = false |
| Whether the matrix is fill complete. More... | |
| std::map< GlobalOrdinal, std::pair< Teuchos::Array < GlobalOrdinal > , Teuchos::Array< Scalar > > > | nonlocals_ |
| Nonlocal data added using insertGlobalValues(). More... | |
(Global) graph pointers | |
We keep two graph pointers in order to maintain const correctness. myGraph_ is a graph which we create internally. Operations that change the sparsity structure also modify myGraph_. If myGraph_ != null, then staticGraph_ == myGraph_ pointerwise (we set the pointers equal to each other when we create myGraph_). myGraph_ is only null if this CrsMatrix was created using the constructor with a const CrsGraph input argument. In this case, staticGraph_ is set to the input CrsGraph. | |
| Teuchos::RCP< const Graph > | staticGraph_ |
| Teuchos::RCP< Graph > | myGraph_ |
Related Functions | |
(Note that these are not member functions.) | |
| template<class CrsMatrixType > | |
| Teuchos::RCP< CrsMatrixType > | importAndFillCompleteCrsMatrix (const Teuchos::RCP< const CrsMatrixType > &sourceMatrix, const Import< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &importer, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Nonmember CrsMatrix constructor that fuses Import and fillComplete(). More... | |
| template<class CrsMatrixType > | |
| Teuchos::RCP< CrsMatrixType > | importAndFillCompleteCrsMatrix (const Teuchos::RCP< const CrsMatrixType > &sourceMatrix, const Import< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &rowImporter, const Import< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &domainImporter, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &domainMap, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms) |
| Nonmember CrsMatrix constructor that fuses Import and fillComplete(). More... | |
| template<class CrsMatrixType > | |
| Teuchos::RCP< CrsMatrixType > | exportAndFillCompleteCrsMatrix (const Teuchos::RCP< const CrsMatrixType > &sourceMatrix, const Export< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &exporter, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Nonmember CrsMatrix constructor that fuses Export and fillComplete(). More... | |
| template<class CrsMatrixType > | |
| Teuchos::RCP< CrsMatrixType > | exportAndFillCompleteCrsMatrix (const Teuchos::RCP< const CrsMatrixType > &sourceMatrix, const Export< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &rowExporter, const Export< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > &domainExporter, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &domainMap, const Teuchos::RCP< const Map< typename CrsMatrixType::local_ordinal_type, typename CrsMatrixType::global_ordinal_type, typename CrsMatrixType::node_type > > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > ¶ms) |
| Nonmember CrsMatrix constructor that fuses Export and fillComplete(). More... | |
| template<class Scalar , class LocalOrdinal , class GlobalOrdinal , class Node > | |
| Teuchos::RCP< CrsMatrix < Scalar, LocalOrdinal, GlobalOrdinal, Node > > | createCrsMatrix (const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &map, const size_t maxNumEntriesPerRow=0, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) |
| Create an empty CrsMatrix given a row map and a single integer upper bound on the number of stored entries per row. More... | |
| template<class CrsMatrixType > | |
| void | removeCrsMatrixZeros (CrsMatrixType &matrix, typename Teuchos::ScalarTraits< typename CrsMatrixType::scalar_type >::magnitudeType const &threshold=Teuchos::ScalarTraits< typename CrsMatrixType::scalar_type >::magnitude(Teuchos::ScalarTraits< typename CrsMatrixType::scalar_type >::zero())) |
| Remove zero entries from a matrix. More... | |
Methods for inserting, modifying, or removing entries | |
| void | insertGlobalValues (const GlobalOrdinal globalRow, const Teuchos::ArrayView< const GlobalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals) |
| Insert one or more entries into the matrix, using global column indices. More... | |
| void | insertGlobalValues (const GlobalOrdinal globalRow, const LocalOrdinal numEnt, const Scalar vals[], const GlobalOrdinal inds[]) |
| Epetra compatibility version of insertGlobalValues (see above) that takes arguments as raw pointers, rather than Teuchos::ArrayView. More... | |
| void | insertLocalValues (const LocalOrdinal localRow, const Teuchos::ArrayView< const LocalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals, const CombineMode CM=ADD) |
| Insert one or more entries into the matrix, using local column indices. More... | |
| void | insertLocalValues (const LocalOrdinal localRow, const LocalOrdinal numEnt, const Scalar vals[], const LocalOrdinal cols[], const CombineMode CM=ADD) |
| Epetra compatibility version of insertLocalValues (see above) that takes arguments as raw pointers, rather than Teuchos::ArrayView. More... | |
| local_ordinal_type | replaceGlobalValues (const global_ordinal_type globalRow, const Kokkos::View< const global_ordinal_type *, Kokkos::AnonymousSpace > &inputInds, const Kokkos::View< const impl_scalar_type *, Kokkos::AnonymousSpace > &inputVals) |
| Replace one or more entries' values, using global indices. More... | |
| LocalOrdinal | replaceGlobalValues (const GlobalOrdinal globalRow, const Teuchos::ArrayView< const GlobalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals) |
| Overload of replaceGlobalValues (see above), that takes Teuchos::ArrayView (host pointers) instead of Kokkos::View. More... | |
| LocalOrdinal | replaceGlobalValues (const GlobalOrdinal globalRow, const LocalOrdinal numEnt, const Scalar vals[], const GlobalOrdinal cols[]) |
| Overload of replaceGlobalValues (see above), that takes raw pointers instead of Kokkos::View. More... | |
| local_ordinal_type | replaceLocalValues (const local_ordinal_type localRow, const Kokkos::View< const local_ordinal_type *, Kokkos::AnonymousSpace > &inputInds, const Kokkos::View< const impl_scalar_type *, Kokkos::AnonymousSpace > &inputVals) |
| Replace one or more entries' values, using local row and column indices. More... | |
| LocalOrdinal | replaceLocalValues (const LocalOrdinal localRow, const Teuchos::ArrayView< const LocalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals) |
| Backwards compatibility version of replaceLocalValues (see above), that takes Teuchos::ArrayView (host pointers) instead of Kokkos::View. More... | |
| LocalOrdinal | replaceLocalValues (const LocalOrdinal localRow, const LocalOrdinal numEnt, const Scalar inputVals[], const LocalOrdinal inputCols[]) |
| Epetra compatibility version of replaceLocalValues, that takes raw pointers instead of Kokkos::View. More... | |
| LocalOrdinal | sumIntoGlobalValues (const GlobalOrdinal globalRow, const Teuchos::ArrayView< const GlobalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals, const bool atomic=useAtomicUpdatesByDefault) |
| Sum into one or more sparse matrix entries, using global indices. More... | |
| LocalOrdinal | sumIntoGlobalValues (const GlobalOrdinal globalRow, const LocalOrdinal numEnt, const Scalar vals[], const GlobalOrdinal cols[], const bool atomic=useAtomicUpdatesByDefault) |
| Epetra compatibility version of sumIntoGlobalValues (see above), that takes input as raw pointers instead of Kokkos::View. More... | |
| local_ordinal_type | sumIntoLocalValues (const local_ordinal_type localRow, const Kokkos::View< const local_ordinal_type *, Kokkos::AnonymousSpace > &inputInds, const Kokkos::View< const impl_scalar_type *, Kokkos::AnonymousSpace > &inputVals, const bool atomic=useAtomicUpdatesByDefault) |
| Sum into one or more sparse matrix entries, using local row and column indices. More... | |
| LocalOrdinal | sumIntoLocalValues (const LocalOrdinal localRow, const Teuchos::ArrayView< const LocalOrdinal > &cols, const Teuchos::ArrayView< const Scalar > &vals, const bool atomic=useAtomicUpdatesByDefault) |
| Sum into one or more sparse matrix entries, using local row and column indices. More... | |
| LocalOrdinal | sumIntoLocalValues (const LocalOrdinal localRow, const LocalOrdinal numEnt, const Scalar vals[], const LocalOrdinal cols[], const bool atomic=useAtomicUpdatesByDefault) |
| Epetra compatibility version of sumIntoLocalValues (see above) that takes raw pointers instead of Kokkos::View. More... | |
| template<class LocalIndicesViewType , class ImplScalarViewType , class BinaryFunction > | |
| LocalOrdinal | transformLocalValues (const LocalOrdinal lclRow, const typename UnmanagedView< LocalIndicesViewType >::type &inputInds, const typename UnmanagedView< ImplScalarViewType >::type &inputVals, BinaryFunction f, const bool atomic=useAtomicUpdatesByDefault) |
| Transform CrsMatrix entries in place, using local indices to select the entries in the row to transform. More... | |
| template<class BinaryFunction , class InputMemorySpace > | |
| LocalOrdinal | transformGlobalValues (const GlobalOrdinal gblRow, const Kokkos::View< const GlobalOrdinal *, InputMemorySpace, Kokkos::MemoryUnmanaged > &inputInds, const Kokkos::View< const impl_scalar_type *, InputMemorySpace, Kokkos::MemoryUnmanaged > &inputVals, BinaryFunction f, const bool atomic=useAtomicUpdatesByDefault) |
| Transform CrsMatrix entries in place, using global indices to select the entries in the row to transform. More... | |
| void | setAllToScalar (const Scalar &alpha) |
Set all matrix entries equal to alpha. More... | |
| void | scale (const Scalar &alpha) |
Scale the matrix's values: this := alpha*this. More... | |
| void | setAllValues (const typename local_graph_device_type::row_map_type &ptr, const typename local_graph_device_type::entries_type::non_const_type &ind, const typename local_matrix_device_type::values_type &val) |
| Set the local matrix using three (compressed sparse row) arrays. More... | |
| void | setAllValues (const local_matrix_device_type &localMatrix) |
| Set the local matrix using an existing local matrix. More... | |
| void | setAllValues (const Teuchos::ArrayRCP< size_t > &ptr, const Teuchos::ArrayRCP< LocalOrdinal > &ind, const Teuchos::ArrayRCP< Scalar > &val) |
| Set the local matrix using three (compressed sparse row) arrays. More... | |
| row_ptrs_host_view_type | getLocalRowPtrsHost () const |
| Get a host view of the CRS packed row pointers. More... | |
| row_ptrs_device_view_type | getLocalRowPtrsDevice () const |
| Get a device view of the CRS packed row pointers. More... | |
| local_inds_host_view_type | getLocalIndicesHost () const |
| Get a host view of the CRS packed column indicies. More... | |
| local_inds_device_view_type | getLocalIndicesDevice () const |
| Get a device_view of the CRS packed column indicies. More... | |
| virtual LocalOrdinal | replaceGlobalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const GlobalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts) |
| Implementation detail of replaceGlobalValues. More... | |
| virtual LocalOrdinal | replaceLocalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const LocalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts) |
| Implementation detail of replaceLocalValues. More... | |
| virtual LocalOrdinal | sumIntoGlobalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const GlobalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts, const bool atomic=useAtomicUpdatesByDefault) |
| Implementation detail of sumIntoGlobalValues. More... | |
| virtual LocalOrdinal | sumIntoLocalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const LocalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts, const bool atomic=useAtomicUpdatesByDefault) |
| Implementation detail of sumIntoLocalValues. More... | |
Methods implementing RowMatrix | |
| Teuchos::RCP< const Teuchos::Comm< int > > | getComm () const override |
| The communicator over which the matrix is distributed. More... | |
| Teuchos::RCP< const map_type > | getRowMap () const override |
| The Map that describes the row distribution in this matrix. More... | |
| Teuchos::RCP< const map_type > | getColMap () const override |
| The Map that describes the column distribution in this matrix. More... | |
| Teuchos::RCP< const RowGraph < LocalOrdinal, GlobalOrdinal, Node > > | getGraph () const override |
| This matrix's graph, as a RowGraph. More... | |
| Teuchos::RCP< const crs_graph_type > | getCrsGraph () const |
| This matrix's graph, as a CrsGraph. More... | |
| TPETRA_DETAILS_ALWAYS_INLINE local_matrix_device_type | getLocalMatrixDevice () const |
| The local sparse matrix. More... | |
| local_matrix_host_type | getLocalMatrixHost () const |
| std::shared_ptr < local_multiply_op_type > | getLocalMultiplyOperator () const |
The local sparse matrix operator (a wrapper of getLocalMatrixDevice() that supports local matrix-vector multiply) More... | |
| global_size_t | getGlobalNumRows () const override |
| Number of global elements in the row map of this matrix. More... | |
| global_size_t | getGlobalNumCols () const override |
| The number of global columns in the matrix. More... | |
| size_t | getLocalNumRows () const override |
| The number of matrix rows owned by the calling process. More... | |
| size_t | getLocalNumCols () const override |
| The number of columns connected to the locally owned rows of this matrix. More... | |
| GlobalOrdinal | getIndexBase () const override |
| The index base for global indices for this matrix. More... | |
| global_size_t | getGlobalNumEntries () const override |
| The global number of entries in this matrix. More... | |
| size_t | getLocalNumEntries () const override |
| The local number of entries in this matrix. More... | |
| size_t | getNumEntriesInGlobalRow (GlobalOrdinal globalRow) const override |
| Number of entries in the sparse matrix in the given global row, on the calling (MPI) process. More... | |
| size_t | getNumEntriesInLocalRow (local_ordinal_type localRow) const override |
| Number of entries in the sparse matrix in the given local row, on the calling (MPI) process. More... | |
| size_t | getGlobalMaxNumRowEntries () const override |
| Maximum number of entries in any row of the matrix, over all processes in the matrix's communicator. More... | |
| size_t | getLocalMaxNumRowEntries () const override |
| Maximum number of entries in any row of the matrix, on this process. More... | |
| virtual LocalOrdinal | getBlockSize () const override |
| The number of degrees of freedom per mesh point. More... | |
| bool | hasColMap () const override |
| Whether the matrix has a well-defined column Map. More... | |
| bool | isLocallyIndexed () const override |
| Whether the matrix is locally indexed on the calling process. More... | |
| bool | isGloballyIndexed () const override |
| Whether the matrix is globally indexed on the calling process. More... | |
| bool | isFillComplete () const override |
| Whether the matrix is fill complete. More... | |
| bool | isFillActive () const |
| Whether the matrix is not fill complete. More... | |
| bool | isStorageOptimized () const |
Returns true if storage has been optimized. More... | |
| bool | isStaticGraph () const |
| Indicates that the graph is static, so that new entries cannot be added to this matrix. More... | |
| mag_type | getFrobeniusNorm () const override |
| Compute and return the Frobenius norm of the matrix. More... | |
| virtual bool | supportsRowViews () const override |
Return true if getLocalRowView() and getGlobalRowView() are valid for this object. More... | |
| void | getGlobalRowCopy (GlobalOrdinal GlobalRow, nonconst_global_inds_host_view_type &Indices, nonconst_values_host_view_type &Values, size_t &NumEntries) const override |
| Fill given arrays with a deep copy of the locally owned entries of the matrix in a given row, using global column indices. More... | |
| void | getLocalRowCopy (LocalOrdinal LocalRow, nonconst_local_inds_host_view_type &Indices, nonconst_values_host_view_type &Values, size_t &NumEntries) const override |
| Fill given arrays with a deep copy of the locally owned entries of the matrix in a given row, using local column indices. More... | |
| void | getGlobalRowView (GlobalOrdinal GlobalRow, global_inds_host_view_type &indices, values_host_view_type &values) const override |
| Get a constant, nonpersisting view of a row of this matrix, using global row and column indices. More... | |
| void | getLocalRowView (LocalOrdinal LocalRow, local_inds_host_view_type &indices, values_host_view_type &values) const override |
| Get a constant view of a row of this matrix, using local row and column indices. More... | |
| void | getLocalDiagCopy (Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag) const override |
| Get a constant, nonpersisting view of a row of this matrix, using local row and column indices, with raw pointers. More... | |
| void | getLocalDiagCopy (Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag, const Kokkos::View< const size_t *, device_type, Kokkos::MemoryUnmanaged > &offsets) const |
| Variant of getLocalDiagCopy() that uses precomputed offsets. More... | |
| void | getLocalDiagCopy (Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag, const Teuchos::ArrayView< const size_t > &offsets) const |
| Variant of getLocalDiagCopy() that uses precomputed offsets. More... | |
| void | getLocalDiagOffsets (Teuchos::ArrayRCP< size_t > &offsets) const |
| Get offsets of the diagonal entries in the matrix. More... | |
| void | leftScale (const Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &x) override |
| Scale the matrix on the left with the given Vector. More... | |
| void | rightScale (const Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &x) override |
| Scale the matrix on the right with the given Vector. More... | |
| using | values_dualv_type = Kokkos::DualView< impl_scalar_type *, device_type > |
| using | values_wdv_type = Details::WrappedDualView< values_dualv_type > |
| using | ordinal_rowptrs_type = typename local_multiply_op_type::ordinal_view_type |
| values_wdv_type | valuesUnpacked_wdv |
| values_wdv_type | valuesPacked_wdv |
| ordinal_rowptrs_type | ordinalRowptrs |
| local_ordinal typed version of local matrix's rowptrs. This allows the LocalCrsMatrixOperator to have rowptrs and entries be the same type, so cuSPARSE SpMV (including merge-path) can be used for apply. This is allocated and populated lazily in getLocalMultiplyOperator(), only if all 4 conditions are met: More... | |
Implementation of DistObject interface | |
| typedef DistObject< Scalar, LocalOrdinal, GlobalOrdinal, Node >::buffer_device_type | buffer_device_type |
| Kokkos::Device specialization for communication buffers. More... | |
| virtual bool | checkSizes (const SrcDistObject &source) override |
| Compare the source and target (this) objects for compatibility. More... | |
| void | applyCrsPadding (const typename crs_graph_type::padding_type &padding, const bool verbose) |
| void | unpackAndCombine (const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< char *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode CM) override |
| Unpack the imported column indices and values, and combine into matrix. More... | |
| void | packNew (const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< char *, buffer_device_type > &exports, const Kokkos::DualView< size_t *, buffer_device_type > &numPacketsPerLID, size_t &constantNumPackets) const |
| Pack this object's data for an Import or Export. More... | |
| virtual void | copyAndPermute (const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM) override |
| virtual void | packAndPrepare (const SrcDistObject &source, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< char *, buffer_device_type > &exports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, size_t &constantNumPackets) override |
Methods implemented by subclasses and used by doTransfer(). | |
The doTransfer() method uses the subclass' implementations of these methods to implement data transfer. Subclasses of DistObject must implement these methods. This is an instance of the Template Method Pattern. ("Template" here doesn't mean "C++ template"; it means "pattern with holes that are filled in by the subclass' method implementations.") | |
| virtual void | copyAndPermute (const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM) |
| Perform copies and permutations that are local to the calling (MPI) process. More... | |
| virtual void | copyAndPermute (const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM, const execution_space &space) |
Same as copyAndPermute, but do operations in space. More... | |
| virtual void | packAndPrepare (const SrcDistObject &source, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< packet_type *, buffer_device_type > &exports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, size_t &constantNumPackets) |
| Pack data and metadata for communication (sends). More... | |
| virtual void | packAndPrepare (const SrcDistObject &source, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< packet_type *, buffer_device_type > &exports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, size_t &constantNumPackets, const execution_space &space) |
| Same as packAndPrepare, but in an execution space instance. More... | |
| virtual void | unpackAndCombine (const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode) |
| Perform any unpacking and combining after communication. More... | |
| virtual void | unpackAndCombine (const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode, const execution_space &space) |
| std::unique_ptr< std::string > | createPrefix (const char className[], const char methodName[]) const |
| virtual bool | reallocImportsIfNeeded (const size_t newSize, const bool verbose, const std::string *prefix, const bool remoteLIDsContiguous=false, const CombineMode CM=INSERT) |
| Reallocate imports_ if needed. More... | |
| Teuchos::RCP< const map_type > | map_ |
| The Map over which this object is distributed. More... | |
| Kokkos::DualView< packet_type *, buffer_device_type > | imports_ |
| Buffer into which packed data are imported (received from other processes). More... | |
| Kokkos::DualView< size_t *, buffer_device_type > | numImportPacketsPerLID_ |
| Number of packets to receive for each receive operation. More... | |
| Kokkos::DualView< packet_type *, buffer_device_type > | exports_ |
| Buffer from which packed data are exported (sent to other processes). More... | |
| Kokkos::DualView< size_t *, buffer_device_type > | numExportPacketsPerLID_ |
| Number of packets to send for each send operation. More... | |
Transformational methods | |
| void | globalAssemble () |
| Communicate nonlocal contributions to other processes. More... | |
| void | endAssembly () |
| Migrates data to the owned mode. More... | |
| void | beginAssembly () |
| Activates the owned+shared mode for assembly. More... | |
| void | endModify () |
| Closes modification phase. More... | |
| void | beginModify () |
| Activates the owned mode for modifying local values. More... | |
| LocalOrdinal | replaceGlobalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const GlobalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts) |
| Overloads of modification methods. More... | |
| LocalOrdinal | replaceLocalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const LocalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts) |
| LocalOrdinal | sumIntoGlobalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const GlobalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts, const bool atomic=useAtomicUpdatesByDefault) |
| LocalOrdinal | sumIntoLocalValuesImpl (impl_scalar_type rowVals[], const crs_graph_type &graph, const RowInfo &rowInfo, const LocalOrdinal inds[], const impl_scalar_type newVals[], const LocalOrdinal numElts, const bool atomic=useAtomicUpdatesByDefault) |
| void | insertGlobalValuesImpl (crs_graph_type &graph, RowInfo &rowInfo, const GlobalOrdinal gblColInds[], const impl_scalar_type vals[], const size_t numInputEnt) |
| void | doOwnedPlusSharedToOwned (const CombineMode CM=Tpetra::ADD) |
| Migrate data from the owned+shared to the owned matrix Since this is non-unique -> unique, we need a combine mode. Precondition: Must be FE_ACTIVE_OWNED_PLUS_SHARED mode. More... | |
| void | doOwnedToOwnedPlusShared (const CombineMode CM=Tpetra::ADD) |
| Migrate data from the owned to the owned+shared matrix Precondition: Must be FE_ACTIVE_OWNED mode. More... | |
| void | switchActiveCrsMatrix () |
| Switches which CrsGraph is active (without migrating data) More... | |
Sparse matrix that presents a row-oriented interface that lets users read or modify entries.
Definition at line 32 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::scalar_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::scalar_type |
This class' first template parameter; the type of each entry in the matrix.
Definition at line 42 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::impl_scalar_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::impl_scalar_type |
The type used internally in place of Scalar.
Some Scalar types might not work with Kokkos on all execution spaces, due to missing CUDA device macros or volatile overloads. The C++ standard type std::complex<T> has this problem. To fix this, we replace std::complex<T> values internally with the (usually) bitwise identical type Kokkos::complex<T>. The latter is the impl_scalar_type corresponding to Scalar = std::complex.
Definition at line 53 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::local_ordinal_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_ordinal_type |
This class' second template parameter; the type of local indices.
Definition at line 56 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::global_ordinal_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::global_ordinal_type |
This class' third template parameter; the type of global indices.
Definition at line 59 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::node_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::node_type |
This class' fourth template parameter; the Kokkos device type.
Definition at line 62 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::device_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::device_type |
The Kokkos device type.
Definition at line 65 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::execution_space Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::execution_space |
The Kokkos execution space.
Definition at line 68 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::mag_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::mag_type |
Type of a norm result.
This is usually the same as the type of the magnitude (absolute value) of Scalar, but may differ for certain Scalar types.
Definition at line 75 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::map_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::map_type |
The Map specialization suitable for this CrsMatrix specialization.
Definition at line 78 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::import_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::import_type |
The Import specialization suitable for this CrsMatrix specialization.
Definition at line 81 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::export_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::export_type |
The Export specialization suitable for this CrsMatrix specialization.
Definition at line 84 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::crs_graph_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::crs_graph_type |
The CrsGraph specialization suitable for this CrsMatrix specialization.
Definition at line 87 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::local_graph_device_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_graph_device_type |
The part of the sparse matrix's graph on each MPI process.
Definition at line 90 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::local_matrix_device_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_matrix_device_type |
The specialization of Kokkos::CrsMatrix that represents the part of the sparse matrix for each MPI process on device.
Definition at line 94 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>::local_matrix_host_type Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::local_matrix_host_type |
The specialization of Kokkos::CrsMatrix that represents the part of the sparse matrix for each MPI process on host.
Definition at line 98 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node> Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::crs_matrix_type |
Parent CrsMatrix type using the same scalars.
Definition at line 101 of file Tpetra_FECrsMatrix_decl.hpp.
| typedef FECrsGraph<LocalOrdinal, GlobalOrdinal, Node> Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::fe_crs_graph_type |
The CrsGraph specialization suitable for this CrsMatrix specialization.
Definition at line 104 of file Tpetra_FECrsMatrix_decl.hpp.
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inherited |
The Kokkos memory space.
Definition at line 430 of file Tpetra_CrsMatrix_decl.hpp.
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inherited |
The RowMatrix representing the base class of CrsMatrix.
Definition at line 448 of file Tpetra_CrsMatrix_decl.hpp.
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The type of the local matrix-vector operator (a wrapper of KokkosSparse::CrsMatrix )
Definition at line 490 of file Tpetra_CrsMatrix_decl.hpp.
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Kokkos::Device specialization for communication buffers.
See #1088 for why this is not just device_type::device_type.
Definition at line 2957 of file Tpetra_CrsMatrix_decl.hpp.
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The type of each datum being sent or received in an Import or Export.
Note that this type does not always correspond to the Scalar template parameter of subclasses.
Definition at line 304 of file Tpetra_DistObject_decl.hpp.
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explicit |
Constructor specifying one or two previously constructed graphs.
Calling this constructor fixes the graph structure of the sparse matrix. We say in this case that the matrix has a "static graph." If you create a FECrsMatrix with this constructor, you are not allowed to insert new entries into the matrix, but you are allowed to change values in the matrix.
The given graphs must be fill complete. Note that calling resumeFill() on the graph makes it not fill complete, even if you had previously called fillComplete() on the graph. In that case, you must call fillComplete() on the graph again before invoking this CrsMatrix constructor.
The matrix is constructed in "closed" fill state and, if the the optional "start owned" parameter is set to true, "owned" state. You must first call beginAssembly or beginModify if you wish to change its entries (the difference between these two can be found elsewhere in the documentation).
This constructor is marked explicit so that you can't create a FECrsMatrix by accident when passing a FECrsGraph into a function that takes a FECrsMatrix.
| graph | [in] The FECrsGraph structure of the sparse matrix. The graph must have endFill() called |
| params | [in/out] Optional list of parameters. If not null, any missing parameters will be filled in with their default values. |
Definition at line 19 of file Tpetra_FECrsMatrix_def.hpp.
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delete |
Copy constructor (forbidden).
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delete |
Move constructor (forbidden).
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virtualdefault |
Destructor (virtual for memory safety of derived classes).
=delete declarations for copy construction, move construction, copy assignment, and move assignment.
|
delete |
Copy assignment (forbidden).
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delete |
Move assignment (forbidden).
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inline |
Communicate nonlocal contributions to other processes.
Users do not normally need to call this method. fillComplete always calls this method, unless you specifically tell fillComplete to do otherwise by setting its "No Nonlocal
Changes" parameter to true. Thus, it suffices to call fillComplete.
Methods like insertGlobalValues and sumIntoGlobalValues let you add or modify entries in rows that are not owned by the calling process. These entries are called "nonlocal contributions." The methods that allow nonlocal contributions store the entries on the calling process, until globalAssemble is called. globalAssemble sends these nonlocal contributions to the process(es) that own them, where they then become part of the matrix.
This method only does global assembly if there are nonlocal entries on at least one process. It does an all-reduce to find that out. If not, it returns early, without doing any more communication or work.
If you previously inserted into a row which is not owned by any process in the row Map, the behavior of this method is undefined. It may detect the invalid row indices and throw an exception, or it may silently drop the entries inserted into invalid rows. Behavior may vary, depending on whether Tpetra was built with debug checking enabled.
Definition at line 199 of file Tpetra_FECrsMatrix_decl.hpp.
| void Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::endAssembly | ( | ) |
Migrates data to the owned mode.
Definition at line 133 of file Tpetra_FECrsMatrix_def.hpp.
| void Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::beginAssembly | ( | ) |
Activates the owned+shared mode for assembly.
This routine begins the finite element assembly in owned+shared mode.
Definition at line 118 of file Tpetra_FECrsMatrix_def.hpp.
| void Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::endModify | ( | ) |
Closes modification phase.
Definition at line 163 of file Tpetra_FECrsMatrix_def.hpp.
| void Tpetra::FECrsMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >::beginModify | ( | ) |
Activates the owned mode for modifying local values.
This is for use in modifying local values only, not information which needs to be migrated across ranks. Applying Dirichlet boundary conditions to owned degrees-of-freedom is the architypical example of a use-case for beginModify()
Definition at line 148 of file Tpetra_FECrsMatrix_def.hpp.
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Overloads of modification methods.
Definition at line 178 of file Tpetra_FECrsMatrix_def.hpp.
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Migrate data from the owned+shared to the owned matrix Since this is non-unique -> unique, we need a combine mode. Precondition: Must be FE_ACTIVE_OWNED_PLUS_SHARED mode.
Definition at line 67 of file Tpetra_FECrsMatrix_def.hpp.
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protected |
Migrate data from the owned to the owned+shared matrix Precondition: Must be FE_ACTIVE_OWNED mode.
Definition at line 78 of file Tpetra_FECrsMatrix_def.hpp.
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protected |
Switches which CrsGraph is active (without migrating data)
Definition at line 83 of file Tpetra_FECrsMatrix_def.hpp.
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inherited |
Insert one or more entries into the matrix, using global column indices.
| globalRow | [in] Global index of the row into which to insert the entries. |
| cols | [in] Global indices of the columns into which to insert the entries. |
| vals | [in] Values to insert into the above columns. |
For all k in 0, ..., col.size()-1, insert the value values[k] into entry (globalRow, cols[k]) of the matrix. If that entry already exists, add the new value to the old value.
This is a local operation. It does not communicate (using MPI). If row globalRow is owned by the calling process, the entries will be inserted immediately. Otherwise, if that row is not owned by the calling process, then the entries will be stored locally for now, and only communicated to the process that owns the row when either fillComplete() or globalAssemble() is called. If that process already has an entry, the incoming value will be added to the old value, just as if it were inserted on the owning process. If the matrix has a column Map (hasColMap() == true), and if globalRow is owned by process p, then it is forbidden to insert column indices that are not in the column Map on process p. Tpetra will test the input column indices to ensure this is the case, but if globalRow is not owned by the calling process, the test will be deferred until the next call to globalAssemble() or fillComplete().
It is legal to call this method whether the matrix's column indices are globally or locally indexed. If the matrix's column indices are locally indexed (isLocallyIndexed() == true), then this method will convert the input global column indices to local column indices.
For better performance when filling entries into a sparse matrix, consider the following tips:
Definition at line 1978 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Epetra compatibility version of insertGlobalValues (see above) that takes arguments as raw pointers, rather than Teuchos::ArrayView.
Arguments are the same and in the same order as Epetra_CrsMatrix::InsertGlobalValues.
| globalRow | [in] Global index of the row into which to insert the entries. |
| numEnt | [in] Number of entries to insert; number of valid entries in vals and inds. |
| vals | [in] Values to insert. |
| inds | [in] Global indices of the columns into which to insert the entries. |
Definition at line 2090 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Insert one or more entries into the matrix, using local column indices.
| localRow | [in] Local index of the row into which to insert the entries. It must be owned by the row Map on the calling process. |
| cols | [in] Local indices of the columns into which to insert the entries. All of the column indices must be owned by the column Map on the calling process. |
| vals | [in] Values to insert into the above columns. |
| CM | [in] How values should be inserted. Valid options are: ADD (default) inserts values that are not yet in the matrix graph, and sums values that are already present. INSERT inserts values that are not yet in the matrix graph, and replaces values that are already present. |
For all k in 0, ..., cols.size()-1, insert the value values[k] into entry (globalRow, cols[k]) of the matrix. If that entry already exists, add the new value to the old value, if CM=ADD, otherwise replace the old value.
In order to call this method, the matrix must be locally indexed, and it must have a column Map.
For better performance when filling entries into a sparse matrix, consider the following tips:
Definition at line 1746 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Epetra compatibility version of insertLocalValues (see above) that takes arguments as raw pointers, rather than Teuchos::ArrayView.
Arguments are the same and in the same order as Epetra_CrsMatrix::InsertMyValues.
| localRow | [in] Local index of the row into which to insert the entries. |
| numEnt | [in] Number of entries to insert; number of valid entries in vals and cols. |
| vals | [in] Values to insert. |
| cols | [in] Global indices of the columns into which to insert the entries. |
| CM | [in] How values should be inserted. Valid options are: ADD (default) inserts values that are not yet in the matrix graph, and sums values that are already present. INSERT inserts values that are not yet in the matrix graph, and replaces values that are already present. |
Definition at line 1843 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Implementation detail of replaceGlobalValues.
| rowVals | [in/out] On input: Values of the row of the sparse matrix to modify. On output: The modified values. |
| graph | [in] The matrix's graph. |
| rowInfo | [in] Result of graph.getRowInfo on the index of the local row of the matrix to modify. |
| inds | [in] Global column indices of that row to modify. |
| newVals | [in] For each k, replace the value in rowVals corresponding to local column index inds[k] with newVals[k]. |
Definition at line 2420 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace one or more entries' values, using global indices.
| globalRow | [in] Global index of the row in which to replace the entries. This row must be owned by the calling process. |
| inputInds | [in] Kokkos::View of the global indices of the columns in which to replace the entries. |
| inputVals | [in] Kokkos::View of the values to use for replacing the entries. |
For all k in 0, ..., inputInds.extent(0)-1, replace the value at entry (globalRow, inputInds(k)) of the matrix with inputVals(k). That entry must exist in the matrix already.
If (globalRow, inputInds(k)) corresponds to an entry that is duplicated in this matrix row (likely because it was inserted more than once and fillComplete() has not been called in the interim), the behavior of this method is not defined.
If the returned value N satisfies
0 <= N < inputInds.extent(0),
then inputInds.extent(0) - N of the entries of cols are not valid global column indices. If the returned value is Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), then at least one of the following is true:
! isFillActive () inputInds.extent (0) != inputVals.extent (0) Definition at line 2488 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Overload of replaceGlobalValues (see above), that takes Teuchos::ArrayView (host pointers) instead of Kokkos::View.
Definition at line 2439 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Overload of replaceGlobalValues (see above), that takes raw pointers instead of Kokkos::View.
This version of the method takes the same arguments in the same order as Epetra_CrsMatrix::ReplaceGlobalValues.
| globalRow | [in] Global index of the row in which to replace the entries. This row must be owned by the calling process. |
| numEnt | [in] Number of entries to replace; number of valid entries in vals and cols. |
| vals | [in] Values to use for replacing the entries. |
| cols | [in] Global indices of the columns in which to replace the entries. |
Definition at line 2457 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Implementation detail of replaceLocalValues.
| rowVals | [in/out] On input: Values of the row of the sparse matrix to modify. On output: The modified values. |
| graph | [in] The matrix's graph. |
| rowInfo | [in] Result of graph.getRowInfo on the index of the local row of the matrix to modify. |
| inds | [in] Local column indices of that row to modify. |
| newVals | [in] For each k, replace the value in rowVals corresponding to local column index inds[k] with newVals[k]. |
Definition at line 2282 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace one or more entries' values, using local row and column indices.
| localRow | [in] local index of the row in which to replace the entries. This row must be owned by the calling process. |
| cols | [in] Local indices of the columns in which to replace the entries. |
| vals | [in] Values to use for replacing the entries. |
For local row index localRow and local column indices cols, do A(localRow, cols(k)) = vals(k). The row index and column indices must be valid on the calling process, and all matrix entries A(localRow, cols(k)) must already exist. (This method does not change the matrix's structure.) If the row index is valid, any invalid column indices are ignored, but counted in the return value.
If the returned value N satisfies
0 <= N < cols.extent(0),
then cols.extent(0) - N of the entries of cols are not valid local column indices. If the returned value is Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), then at least one of the following is true:
! isFillActive () ! hasColMap () cols.extent (0) != vals.extent (0) Definition at line 2372 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Backwards compatibility version of replaceLocalValues (see above), that takes Teuchos::ArrayView (host pointers) instead of Kokkos::View.
Definition at line 2352 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Epetra compatibility version of replaceLocalValues, that takes raw pointers instead of Kokkos::View.
This version of the method takes the same arguments in the same order as Epetra_CrsMatrix::ReplaceMyValues.
| localRow | [in] local index of the row in which to replace the entries. This row must be owned by the calling process. |
| numEnt | [in] Number of entries to replace; number of valid entries in inputVals and inputCols. |
| inputVals | [in] Values to use for replacing the entries. |
| inputCols | [in] Local indices of the columns in which to replace the entries. |
Definition at line 2391 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Implementation detail of sumIntoGlobalValues.
| InputMemorySpace | Kokkos memory space / device in which the input data live. This may differ from the memory space in which the current matrix values (rowVals) live. |
| ValsMemorySpace | Kokkos memory space / device in which the matrix's current values live. This may differ from the memory space in which the input data (inds and newVals) live. |
| rowVals | [in/out] On input: Values of the row of the sparse matrix to modify. On output: The modified values. |
| graph | [in] The matrix's graph. |
| rowInfo | [in] Result of getRowInfo on the index of the local row of the matrix to modify. |
| inds | [in] Global column indices of that row to modify. |
| newVals | [in] For each k, increment the value in rowVals corresponding to global column index inds[k] by newVals[k]. |
Definition at line 2513 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Sum into one or more sparse matrix entries, using global indices.
This is a local operation; it does not involve communication. However, if you sum into rows not owned by the calling process, it may result in future communication in globalAssemble() (which is called by fillComplete()).
If globalRow is owned by the calling process, then this method performs the sum-into operation right away. Otherwise, if the row is not owned by the calling process, this method defers the sum-into operation until globalAssemble(). That method communicates data for nonowned rows to the processes that own those rows. Then, globalAssemble() does one of the following:
| globalRow | [in] The global index of the row in which to sum into the matrix entries. |
| cols | [in] One or more column indices. |
| vals | [in] One or more values corresponding to those column indices. vals[k] corresponds to cols[k]. |
| atomic | [in] Whether to use atomic updates. |
This method has the same preconditions and return value meaning as replaceGlobalValues() (which see).
Definition at line 2597 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Epetra compatibility version of sumIntoGlobalValues (see above), that takes input as raw pointers instead of Kokkos::View.
Arguments are the same and in the same order as those of Epetra_CrsMatrix::SumIntoGlobalValues, except for atomic, which is as above.
| globalRow | [in] The global index of the row in which to sum into the matrix entries. |
| numEnt | [in] Number of valid entries in vals and cols. This has type LocalOrdinal because we assume that users will never want to insert more column indices in one call than the matrix has columns. |
| vals | [in] numEnt values corresponding to the column indices in cols. That is, vals[k] is the value corresponding to cols[k]. |
| cols | [in] numEnt global column indices. |
| atomic | [in] Whether to use atomic updates. |
Definition at line 2617 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Implementation detail of sumIntoLocalValues.
| rowVals | [in/out] On input: Values of the row of the sparse matrix to modify. On output: The modified values. |
| graph | [in] The matrix's graph. |
| rowInfo | [in] Result of graph.getRowInfo on the index of the local row of the matrix to modify. |
| inds | [in] Local column indices of that row to modify. |
| newVals | [in] For each k, increment the value in rowVals corresponding to local column index inds[k] by newVals[k]. |
| atomic | [in] Whether to use atomic updates (+=) when incrementing values. |
Definition at line 2951 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Sum into one or more sparse matrix entries, using local row and column indices.
For local row index localRow and local column indices cols, perform the update A(localRow, cols[k]) += vals[k]. The row index and column indices must be valid on the calling process, and all matrix entries A(localRow, cols[k]) must already exist. (This method does not change the matrix's structure.) If the row index is valid, any invalid column indices are ignored, but counted in the return value.
This overload of the method takes the column indices and values as Kokkos::View. See below for an overload that takes Teuchos::ArrayView instead.
| LocalIndicesViewType | Kokkos::View specialization that is a 1-D array of LocalOrdinal. |
| ImplScalarViewType | Kokkos::View specialization that is a 1-D array of impl_scalar_type (usually the same as Scalar, unless Scalar is std::complex<T> for some T, in which case it is Kokkos::complex<T>). |
| localRow | [in] Local index of a row. This row must be owned by the calling process. |
| cols | [in] Local indices of the columns whose entries we want to modify. |
| vals | [in] Values corresponding to the above column indices. vals(k) corresponds to cols(k). |
| atomic | [in] Whether to use atomic updates. |
This method has the same preconditions and return value meaning as replaceLocalValues() (which see).
Definition at line 3053 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Sum into one or more sparse matrix entries, using local row and column indices.
For local row index localRow and local column indices cols, perform the update A(localRow, cols[k]) += vals[k]. The row index and column indices must be valid on the calling process, and all matrix entries A(localRow, cols[k]) must already exist. (This method does not change the matrix's structure.) If the row index is valid, any invalid column indices are ignored, but counted in the return value.
This overload of the method takes the column indices and values as Teuchos::ArrayView. See above for an overload that takes Kokkos::View instead.
| localRow | [in] Local index of a row. This row must be owned by the calling process. |
| cols | [in] Local indices of the columns whose entries we want to modify. |
| vals | [in] Values corresponding to the above column indices. vals[k] corresponds to cols[k]. |
| atomic | [in] Whether to use atomic updates. |
This method has the same preconditions and return value meaning as replaceLocalValues() (which see).
Definition at line 3033 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Epetra compatibility version of sumIntoLocalValues (see above) that takes raw pointers instead of Kokkos::View.
Arguments are the same and in the same order as Epetra_CrsMatrix::SumIntoMyValues, except for the atomic last argument, which is as above.
| localRow | [in] The local index of the row in which to sum into the matrix entries. |
| numEnt | [in] Number of valid entries in vals and cols. This has type LocalOrdinal because we assume that users will never want to insert more column indices in one call than the matrix has columns. |
| vals | [in] numEnt values corresponding to the column indices in cols. That is, vals[k] is the value corresponding to cols[k]. |
| cols | [in] numEnt local column indices. |
| atomic | [in] Whether to use atomic updates. |
Definition at line 3073 of file Tpetra_CrsMatrix_def.hpp.
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inlineinherited |
Transform CrsMatrix entries in place, using local indices to select the entries in the row to transform.
For every entry 
to transform, if 
is the corresponding entry of the inputVals array, then we apply the binary function f to as follows:
![\[ A(i,j) := f(A(i,j), v_{ij}). \]](form_7.png)
For example, BinaryFunction = std::plus<impl_scalar_type> does the same thing as sumIntoLocalValues, and BinaryFunction = project2nd<impl_scalar_type,impl_scalar_type> does the same thing as replaceLocalValues. (It is generally more efficient to call sumIntoLocalValues resp. replaceLocalValues than to do this.)
This overload of the method takes the column indices and values as Kokkos::View. See below for an overload that takes Teuchos::ArrayView instead.
| LocalIndicesViewType | Kokkos::View specialization that is a 1-D array of LocalOrdinal. |
| ImplScalarViewType | Kokkos::View specialization that is a 1-D array of impl_scalar_type (usually the same as Scalar, unless Scalar is std::complex<T> for some T, in which case it is Kokkos::complex<T>). |
| BinaryFunction | The type of the binary function f to use for updating the sparse matrix's value(s). This should be convertible to std::function<impl_scalar_type (const impl_scalar_type&, const impl_scalar_type&)>. |
| lclRow | [in] (Local) index of the row to modify. This row must</t> be owned by the calling process. (This is a stricter requirement than for sumIntoGlobalValues.) |
| inputInds | [in] (Local) indices in the row to modify. Indices not in the row on the calling process, and their corresponding values, will be ignored. |
| inputVals | [in] Values to use for modification. |
| f | [in] The binary function to use for updating the sparse matrix's value. It takes two impl_scalar_type values and returns impl_scalar_type. |
| atomic | [in] Whether to use atomic updates. |
Definition at line 1686 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Transform CrsMatrix entries in place, using global indices to select the entries in the row to transform.
For every entry to transform, if is the corresponding entry of the inputVals array, then we apply the binary function f to as follows:
For example, BinaryFunction = std::plus<impl_scalar_type> does the same thing as sumIntoLocalValues, and BinaryFunction = project2nd<impl_scalar_type,impl_scalar_type> does the same thing as replaceLocalValues. (It is generally more efficient to call sumIntoLocalValues resp. replaceLocalValues than to do this.)
| BinaryFunction | The type of the binary function f to use for updating the sparse matrix's value(s). This should be convertible to std::function<impl_scalar_type (const impl_scalar_type&, const impl_scalar_type&)>. |
| InputMemorySpace | Kokkos memory space / device in which the input data live. This may differ from the memory space in which the current matrix's row's values live. |
| gblRow | [in] (Global) index of the row to modify. This row must</t> be owned by the calling process. (This is a stricter requirement than for sumIntoGlobalValues.) |
| inputInds | [in] (Global) indices in the row to modify. Indices not in the row on the calling process, and their corresponding values, will be ignored. |
| inputVals | [in] Values to use for modification. |
| f | [in] The binary function to use for updating the sparse matrix's value. It takes two impl_scalar_type values and returns impl_scalar_type. |
| atomic | [in] Whether to use atomic updates. |
This method works whether indices are local or global. However, it will cost more if indices are local, since it will have to convert the input global indices to local indices in that case.
Definition at line 1776 of file Tpetra_CrsMatrix_decl.hpp.
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inherited |
Set all matrix entries equal to alpha.
Definition at line 3398 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Scale the matrix's values: this := alpha*this.
Definition at line 3377 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Set the local matrix using three (compressed sparse row) arrays.
hasColMap() == true getGraph() != Teuchos::null This method behaves like the CrsMatrix constructor that takes a const CrsGraph. It fixes the matrix's graph, but does not call fillComplete on the matrix. The graph might not necessarily be fill complete, but it must have a local graph.
The input arguments might be used directly (shallow copy), or they might be (deep) copied.
| ptr | [in] Array of row offsets. |
| ind | [in] Array of (local) column indices. |
| val | [in/out] Array of values. This is in/out because the matrix reserves the right to take this argument by shallow copy. Any method that changes the matrix's values may then change this. |
Definition at line 3422 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Set the local matrix using an existing local matrix.
hasColMap() == true getGraph() != Teuchos::null This method simply calls the method setAllValues that accepts three compressed sparse row arrays.
The input argument might be used directly (shallow copy), or it might be (deep) copied.
| ptr | [in/out] Kokkos sparse local matrix This is in/out because the matrix reserves the right to take this argument by shallow copy. Any method that changes the matrix's values may then change this. |
Definition at line 3470 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Set the local matrix using three (compressed sparse row) arrays.
hasColMap() == true getGraph() != Teuchos::null This method behaves like the CrsMatrix constructor that takes a const CrsGraph. It fixes the matrix's graph, but does not call fillComplete on the matrix. The graph might not necessarily be fill complete, but it must have a local graph.
The input arguments might be used directly (shallow copy), or they might be (deep) copied.
| ptr | [in] Array of row offsets. |
| ind | [in] Array of (local) column indices. |
| val | [in/out] Array of values. This is in/out because the matrix reserves the right to take this argument by shallow copy. Any method that changes the matrix's values may then change this. |
Definition at line 3488 of file Tpetra_CrsMatrix_def.hpp.
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inlineinherited |
Get a host view of the CRS packed row pointers.
Definition at line 1887 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get a device view of the CRS packed row pointers.
Definition at line 1891 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get a host view of the CRS packed column indicies.
Definition at line 1895 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get a device_view of the CRS packed column indicies.
Definition at line 1899 of file Tpetra_CrsMatrix_decl.hpp.
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inherited |
Resume operations that may change the values or structure of the matrix.
This method must be called as a collective operation.
Calling fillComplete "freezes" both the values and the structure of the matrix. If you want to modify the matrix again, you must first call resumeFill. You then may not call resumeFill again on that matrix until you first call fillComplete. You may make sequences of fillComplete, resumeFill calls as many times as you wish.
isFillActive() && ! isFillComplete() Definition at line 4276 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Tell the matrix that you are done changing its structure or values, and that you are ready to do computational kernels (e.g., sparse matrix-vector multiply) with it.
This tells the graph to optimize its data structures for computational kernels, and to prepare (MPI) communication patterns.
Off-process indices are distributed (via globalAssemble()), indices are sorted, redundant indices are fused, and global indices are transformed to local indices.
isFillActive() && ! isFillComplete() ! isFillActive() && isFillComplete() | domainMap | [in] The matrix's domain Map. MUST be one to one! |
| rangeMap | [in] The matrix's range Map. MUST be one to one! May be, but need not be, the same as the domain Map. |
| params | [in/out] List of parameters controlling this method's behavior. See below for valid parameters. |
List of valid parameters in params:
"No Nonlocal Changes" (bool): Default is false. If true, the caller promises that no modifications to nonowned rows have happened on any process since the last call to fillComplete. This saves a global all-reduce to check whether any process did a nonlocal insert. Nonlocal changes include any sumIntoGlobalValues or insertGlobalValues call with a row index that is not in the row Map of the calling process.
bool): Default is true. makeColMap() (which fillComplete may call) always groups remote GIDs by process rank, so that all remote GIDs with the same owning rank occur contiguously. By default, it always sorts remote GIDs in increasing order within those groups. This behavior differs from Epetra, which does not sort remote GIDs with the same owning process. If you don't want to sort (for compatibility with Epetra), set this parameter to false. This parameter only takes effect if the matrix owns the graph. This is an expert mode parameter ONLY. We make no promises about backwards compatibility of this parameter. It may change or disappear at any time. Definition at line 4324 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Tell the matrix that you are done changing its structure or values, and that you are ready to do computational kernels (e.g., sparse matrix-vector multiply) with it. Set default domain and range Maps.
See above three-argument version of fillComplete for full documentation. If the matrix does not yet have domain and range Maps (i.e., if fillComplete has not yet been called on this matrix at least once), then this method uses the matrix's row Map (result of this->getRowMap()) as both the domain Map and the range Map. Otherwise, this method uses the matrix's existing domain and range Maps.
| params | [in/out] List of parameters controlling this method's behavior. See documentation of the three-argument version of fillComplete (above) for valid parameters. |
Definition at line 4298 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Perform a fillComplete on a matrix that already has data.
The matrix must already have filled local 1-D storage (k_clInds1D_ and k_rowPtrs_ for the graph, and k_values1D_ in the matrix). If the matrix has been constructed in any other way, this method will throw an exception. This routine is needed to support other Trilinos packages and should not be called by ordinary users.
| domainMap | [in] The matrix's domain Map. MUST be one to one! |
| rangeMap | [in] The matrix's range Map. MUST be one to one! May be, but need not be, the same as the domain Map. |
| importer | [in] Import from the matrix's domain Map to its column Map. If no Import is necessary (i.e., if the domain and column Maps are the same, in the sense of Tpetra::Map::isSameAs), then this may be Teuchos::null. |
| exporter | [in] Export from the matrix's row Map to its range Map. If no Export is necessary (i.e., if the row and range Maps are the same, in the sense of Tpetra::Map::isSameAs), then this may be Teuchos::null. |
| params | [in/out] List of parameters controlling this method's behavior. |
Definition at line 4523 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace the matrix's column Map with the given Map.
| newColMap | [in] New column Map. Must be nonnull. Within Tpetra, there are no particular restrictions on the column map. However, if this graph will be used in Xpetra, Ifpack2, or MueLu, the column map's list of global indices must follow "Aztec ordering": locally owned GIDs (same order as in domain map), followed by remote GIDs (in order of owning proc, and sorted within each proc). |
It is strongly recommended to use Tpetra::Details::makeColMap() to create the column map. makeColMap() follows Aztec ordering by default.
Definition at line 3885 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Reindex the column indices in place, and replace the column Map. Optionally, replace the Import object as well.
! this->isFillComplete() . NULL, or it is not fill complete: graph == NULL || ! graph->isFillComplete(). | graph | [in] The matrix's graph. If you don't provide this (i.e., if graph == NULL), then the matrix must own its graph, which will be modified in place. (That is, you must not have created the matrix with a constant graph.) If you do provide this, then the method will assume that it is the same graph as the matrix's graph, and the provided graph will be modified in place. |
| newColMap | [in] New column Map. Must be nonnull. |
| newImport | [in] New Import object. Optional; computed if not provided or if null. Computing an Import is expensive, so it is worth providing this if you can. |
| sortEachRow | [in] If true, sort the indices (and their corresponding values) in each row after reindexing. |
Why would you want to use this method? Well, for example, you might need to use an Ifpack2 preconditioner that only accepts a matrix with a certain kind of column Map. Your matrix has the wrong kind of column Map, but you know how to compute the right kind of column Map. You might also know an efficient way to compute an Import object from the current domain Map to the new column Map. (For an instance of the latter, see the Details::makeOptimizedColMapAndImport function in Tpetra_Details_makeOptimizedColMap.hpp.)
Suppose that you created this CrsMatrix with a constant graph; that is, that you called the CrsMatrix constructor that takes a CrsGraph as input:
Now suppose that you want to give A to a preconditioner that can't handle a matrix with an arbitrary column Map (in the example above, origColMap). You first must create a new suitable column Map newColMap, and optionally a new Import object newImport from the matrix's current domain Map to the new column Map. Then, call this method, passing in G (which must not be fill complete) while the matrix is not fill complete. Be sure to save the graph's original Import object; you'll need that later.
Now you may give the matrix A to the preconditioner in question. After doing so, and after you solve the linear system using the preconditioner, you might want to put the matrix back like it originally was. You can do that, too!
Definition at line 3903 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace the current domain Map with the given objects.
The matrix's Import object will be recomputed if needed.
| newDomainMap | [in] New domain Map. Must be nonnull. |
isFillComplete() == true. Definition at line 3939 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace the current domain Map and Import with the given objects.
| newDomainMap | [in] New domain Map. Must be nonnull. |
| newImporter | [in] Optional Import object. If null, the new Domain Map must equal the matrix's Column Map |
isFillComplete() == true. Definition at line 3954 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace the current range Map with the given objects.
The matrix's Export object will be recomputed if needed.
| newRangeMap | [in] New Range Map. Must be nonnull. |
isFillComplete() == true. Definition at line 3970 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Replace the current Range Map and Export with the given objects.
| newRangeMap | [in] New domain Map. Must be nonnull. |
| newExporter | [in] Optional Export object. If null, the new Range Map must equal the matrix's Row Map |
isFillComplete() == true. Definition at line 3985 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Remove processes owning zero rows from the Maps and their communicator.
| newMap | [in] This must be the result of calling the removeEmptyProcesses() method on the row Map. If it is not, this method's behavior is undefined. This pointer will be null on excluded processes. |
Definition at line 7407 of file Tpetra_CrsMatrix_def.hpp.
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virtualinherited |
Remove processes which contain no entries in this object's Map.
On input, this object is distributed over the Map returned by getMap() (the "original Map," with its communicator, the "original communicator"). The input newMap of this method must be the same as the result of calling getMap()->removeEmptyProcesses(). On processes in the original communicator which contain zero entries ("excluded processes," as opposed to "included processes"), the input newMap must be Teuchos::null (which is what getMap()->removeEmptyProcesses() returns anyway).
On included processes, reassign this object's Map (that would be returned by getMap()) to the input newMap, and do any work that needs to be done to restore correct semantics. On excluded processes, free any data that needs freeing, and do any other work that needs to be done to restore correct semantics.
This method has collective semantics over the original communicator. On exit, the only method of this object which is safe to call on excluded processes is the destructor. This implies that subclasses' destructors must not contain communication operations.
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overridevirtualinherited |
The communicator over which the matrix is distributed.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 781 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The Map that describes the row distribution in this matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 909 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The Map that describes the column distribution in this matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 916 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
This matrix's graph, as a RowGraph.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 937 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
This matrix's graph, as a CrsGraph.
Definition at line 947 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
The local sparse matrix.
local_matrix_type object, or fillComplete must have been called on this CrsMatrix at least once. This method will do no error checking, so you are responsible for knowing when it is safe to call this method. Definition at line 983 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
The local sparse matrix operator (a wrapper of getLocalMatrixDevice() that supports local matrix-vector multiply)
Definition at line 1008 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Number of global elements in the row map of this matrix.
This is <it>not</it> the number of rows in the matrix as a mathematical object. This method returns the global sum of the number of local elements in the row map on each processor, which is the row map's getGlobalNumElements(). Since the row map is not one-to-one in general, that global sum could be different than the number of rows in the matrix. If you want the number of rows in the matrix, ask the range map for its global number of elements, using the following code: global_size_t globalNumRows = getRangeMap()->getGlobalNumElements(); This method retains the behavior of Epetra, which also asks the row map for the global number of rows, rather than asking the range map.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 844 of file Tpetra_CrsMatrix_def.hpp.
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The number of global columns in the matrix.
This equals the number of entries in the matrix's domain Map.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 851 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The number of matrix rows owned by the calling process.
Note that the sum of all the return values over all processes in the row Map's communicator does not necessarily equal the global number of rows in the matrix, if the row Map is overlapping.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 858 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The number of columns connected to the locally owned rows of this matrix.
Throws std::runtime_error if ! hasColMap ().
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 866 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The index base for global indices for this matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 902 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The global number of entries in this matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 830 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The local number of entries in this matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 837 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Number of entries in the sparse matrix in the given global row, on the calling (MPI) process.
OrdinalTraits<size_t>::invalid()if the specified global row index is invalid on the calling process, else the number of entries in the given row. Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 874 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Number of entries in the sparse matrix in the given local row, on the calling (MPI) process.
OrdinalTraits<size_t>::invalid()if the specified local row index is invalid on the calling process, else the number of entries in the given row. Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 881 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Maximum number of entries in any row of the matrix, over all processes in the matrix's communicator.
! isFillActive()This method only uses the matrix's graph. Explicitly stored zeros count as "entries."
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 888 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Maximum number of entries in any row of the matrix, on this process.
! isFillActive()This method only uses the matrix's graph. Explicitly stored zeros count as "entries."
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 895 of file Tpetra_CrsMatrix_def.hpp.
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inlineoverridevirtualinherited |
The number of degrees of freedom per mesh point.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 2411 of file Tpetra_CrsMatrix_decl.hpp.
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overridevirtualinherited |
Whether the matrix has a well-defined column Map.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 823 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Whether the matrix is locally indexed on the calling process.
The matrix is locally indexed on the calling process if and only if all of the following hold:
The following is always true:
That is, a matrix may be neither locally nor globally indexed, but it can never be both. Furthermore a matrix that is not fill complete, might have some processes that are neither locally nor globally indexed, and some processes that are globally indexed. The processes that are neither do not have any entries.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 809 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Whether the matrix is globally indexed on the calling process.
The matrix is globally indexed on the calling process if and only if all of the following hold:
The following is always true:
That is, a matrix may be neither locally nor globally indexed, but it can never be both. Furthermore a matrix that is not fill complete, might have some processes that are neither locally nor globally indexed, and some processes that are globally indexed. The processes that are neither do not have any entries.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 816 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Whether the matrix is fill complete.
A matrix is fill complete (or "in compute mode") when fillComplete() has been called without an intervening call to resumeFill(). A matrix must be fill complete in order to call computational kernels like sparse matrix-vector multiply and sparse triangular solve. A matrix must be not fill complete ("in edit mode") in order to call methods that insert, modify, or remove entries.
The following are always true:
A matrix starts out (after its constructor returns) as not fill complete. It becomes fill complete after fillComplete() returns, and becomes not fill complete again if resumeFill() is called. Some methods like clone() and some of the "nonmember constructors" (like importAndFillComplete() and exportAndFillComplete()) may return a fill-complete matrix.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 788 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Whether the matrix is not fill complete.
A matrix is fill complete (or "in compute mode") when fillComplete() has been called without an intervening call to resumeFill(). A matrix must be fill complete in order to call computational kernels like sparse matrix-vector multiply and sparse triangular solve. A matrix must be not fill complete ("in edit mode") in order to call methods that insert, modify, or remove entries.
The following are always true:
A matrix starts out (after its constructor returns) as not fill complete. It becomes fill complete after fillComplete() returns, and becomes not fill complete again if resumeFill() is called. Some methods like clone() and some of the "nonmember constructors" (like importAndFillComplete() and exportAndFillComplete()) may return a fill-complete matrix.
Definition at line 795 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Returns true if storage has been optimized.
Optimized storage means that the allocation of each row is equal to the number of entries. The effect is that a pass through the matrix, i.e., during a mat-vec, requires minimal memory traffic. One limitation of optimized storage is that no new indices can be added to the matrix.
Definition at line 802 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Indicates that the graph is static, so that new entries cannot be added to this matrix.
Definition at line 1043 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Compute and return the Frobenius norm of the matrix.
The Frobenius norm of the matrix is defined as [ |A|_F = {{i,j} |A(i,j)|^2}. ].
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 3833 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Return true if getLocalRowView() and getGlobalRowView() are valid for this object.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 1057 of file Tpetra_CrsMatrix_def.hpp.
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overrideinherited |
Fill given arrays with a deep copy of the locally owned entries of the matrix in a given row, using global column indices.
| GlobalRow | [in] Global index of the row for which to return entries. |
| Indices | [out] Global column indices corresponding to values. |
| Values | [out] Matrix values. |
| NumEntries | [out] Number of entries. |
Scalar or impl_scalar_type for output array of matrix values.If Scalar differs from impl_scalar_type, as for example with std::complex<T> and Kokkos::complex<T>, we must choose which type to use. We must make the same choice as RowMatrix does, else CrsMatrix won't compile, because it won't implement a pure virtual method. We choose Scalar, for the following reasons. First, Scalar is the user's preferred type, and impl_scalar_type an implementation detail that makes Tpetra work with Kokkos. Second, Tpetra's public interface provides a host-only interface, which eliminates some reasons for requiring implementation-specific types like Kokkos::complex.
We do eventually want to put Tpetra methods in Kokkos kernels, but we only need to put them in host kernels, since Tpetra is a host-only interface. Users can still manually handle conversion from Scalar to impl_scalar_type for reductions.
The right thing to do would be to rewrite RowMatrix so that getGlobalRowCopy is NOT inherited, but is implemented by a pure virtual "hook" getGlobalRowCopyImpl. The latter takes raw pointers. That would give us the freedom to overload getGlobalRowCopy, which one normally can't do with virtual methods. It would make sense for one getGlobalRowCopyImpl method to implement both Teuchos::ArrayView and Kokos::View versions of getGlobalRowCopy.
Note: A std::runtime_error exception is thrown if either Indices or Values is not large enough to hold the data associated with row GlobalRow. If row GlobalRow is not owned by the calling process, then Indices and Values are unchanged and NumIndices is returned as Teuchos::OrdinalTraits<size_t>::invalid().
Definition at line 3214 of file Tpetra_CrsMatrix_def.hpp.
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pure virtualinherited |
Get a copy of the given global row's entries.
This method only gets the entries in the given row that are stored on the calling process. Note that if the matrix has an overlapping row Map, it is possible that the calling process does not store all the entries in that row.
| GlobalRow | [in] Global index of the row. |
| Indices | [out] Global indices of the columns corresponding to values. |
| Values | [out] Matrix values. |
| NumEntries | [out] Number of stored entries on the calling process; length of Indices and Values. |
This method throws std::runtime_error if either Indices or Values is not large enough to hold the data associated with row GlobalRow. If GlobalRow does not belong to the calling process, then the method sets NumIndices to Teuchos::OrdinalTraits<size_t>::invalid(), and does not modify Indices or Values.
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overrideinherited |
Fill given arrays with a deep copy of the locally owned entries of the matrix in a given row, using local column indices.
| LocalRow | [in] Local index of the row for which to return entries. |
| Indices | [out] Local column indices corresponding to values. |
| Values | [out] Matrix values. |
| NumEntries | [out] Number of entries returned. |
Note: A std::runtime_error exception is thrown if either colInds or vals is not large enough to hold the data associated with row localRow. If row localRow is not owned by the calling process, then colInds and vals are unchanged and numEntries is returned as Teuchos::OrdinalTraits<size_t>::invalid().
Definition at line 3160 of file Tpetra_CrsMatrix_def.hpp.
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pure virtualinherited |
Get a copy of the given local row's entries.
This method only gets the entries in the given row that are stored on the calling process. Note that if the matrix has an overlapping row Map, it is possible that the calling process does not store all the entries in that row.
| LocalRow | [in] Local index of the row. |
| Indices | [out] Local indices of the columns corresponding to values. |
| Values | [out] Matrix values. |
| NumEntries | [out] Number of stored entries on the calling process; length of Indices and Values. |
This method throws std::runtime_error if either Indices or Values is not large enough to hold the data associated with row LocalRow. If LocalRow does not belong to the calling process, then the method sets NumIndices to Teuchos::OrdinalTraits<size_t>::invalid(), and does not modify Indices or Values.
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overrideinherited |
Get a constant, nonpersisting view of a row of this matrix, using global row and column indices.
| GlobalRow | [in] Global index of the row to view. |
| indices | [out] On output: view of the global column indices in the row. |
| values | [out] On output: view of the values in the row. |
isLocallyIndexed () == false indices.size () == this->getNumEntriesInGlobalRow (GlobalRow)If GlobalRow is not a valid global row index on the calling process, then indices is set to null.
Definition at line 3320 of file Tpetra_CrsMatrix_def.hpp.
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pure virtualinherited |
Get a constant, nonpersisting, globally indexed view of the given row of the matrix.
The returned views of the column indices and values are not guaranteed to persist beyond the lifetime of this. Furthermore, some RowMatrix implementations allow changing the values, or the indices and values. Any such changes invalidate the returned views.
This method only gets the entries in the given row that are stored on the calling process. Note that if the matrix has an overlapping row Map, it is possible that the calling process does not store all the entries in that row.
isGloballyIndexed () && supportsRowViews () indices.size () == getNumEntriesInGlobalRow (GlobalRow)| GlobalRow | [in] Global index of the row. |
| Indices | [out] Global indices of the columns corresponding to values. |
| Values | [out] Matrix values. |
If GlobalRow does not belong to this node, then indices is set to null.
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overrideinherited |
Get a constant view of a row of this matrix, using local row and column indices.
| LocalRow | [in] Local index of the row to view. |
| indices | [out] On output: view of the local column indices in the row. |
| values | [out] On output: view of the values in the row. |
isGloballyIndexed () == false indices.size () == this->getNumEntriesInLocalRow (LocalRow)If LocalRow is not a valid local row index on the calling process, then indices is set to null.
Definition at line 3261 of file Tpetra_CrsMatrix_def.hpp.
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pure virtualinherited |
Get a constant, nonpersisting, locally indexed view of the given row of the matrix.
The returned views of the column indices and values are not guaranteed to persist beyond the lifetime of this. Furthermore, some RowMatrix implementations allow changing the values, or the indices and values. Any such changes invalidate the returned views.
This method only gets the entries in the given row that are stored on the calling process. Note that if the matrix has an overlapping row Map, it is possible that the calling process does not store all the entries in that row.
isLocallyIndexed () && supportsRowViews () indices.size () == getNumEntriesInGlobalRow (LocalRow)| LocalRow | [in] Local index of the row. |
| Indices | [out] Local indices of the columns corresponding to values. |
| Values | [out] Matrix values. |
If LocalRow does not belong to this node, then indices is set to null.
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overridevirtualinherited |
Get a constant, nonpersisting view of a row of this matrix, using local row and column indices, with raw pointers.
This overload exists only if Scalar differs from impl_scalar_type. In that case, this overload takes a Scalar pointer. Get a copy of the diagonal entries of the matrix.
This method returns a Vector with the same Map as this matrix's row Map. On each process, it contains the diagonal entries owned by the calling process. If the matrix has an empty row, the diagonal entry contains a zero.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 3569 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Variant of getLocalDiagCopy() that uses precomputed offsets.
This method uses the offsets of the diagonal entries, as precomputed by the Kokkos::View overload of getLocalDiagOffsets(), to speed up copying the diagonal of the matrix. The offsets must be recomputed if any of the following methods are called:
If the matrix has a const ("static") graph, and if that graph is fill complete, then the offsets array remains valid through calls to fillComplete() and resumeFill().
Definition at line 3628 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Variant of getLocalDiagCopy() that uses precomputed offsets.
This method uses the offsets of the diagonal entries, as precomputed by getLocalDiagOffsets(), to speed up copying the diagonal of the matrix. The offsets must be recomputed if any of the following methods are called:
If the matrix has a const ("static") graph, and if that graph is fill complete, then the offsets array remains valid through calls to fillComplete() and resumeFill().
Definition at line 3665 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Get offsets of the diagonal entries in the matrix.
offsets.size() == getLocalNumRows()This method creates an array of offsets of the local diagonal entries in the matrix. This array is suitable for use in the two-argument version of getLocalDiagCopy(). However, its contents are not defined in any other context. For example, you should not rely on offsets[i] being the index of the diagonal entry in the views returned by getLocalRowView(). This may be the case, but it need not be. (For example, we may choose to optimize the lookups down to the optimized storage level, in which case the offsets will be computed with respect to the underlying storage format, rather than with respect to the views.)
Calling any of the following invalidates the output array:
If the matrix has a const ("static") graph, and if that graph is fill complete, then the offsets array remains valid through calls to fillComplete() and resumeFill(). "Invalidates" means that you must call this method again to recompute the offsets.
Definition at line 3527 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Scale the matrix on the left with the given Vector.
On return, for all entries i,j in the matrix, 
.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 3724 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Scale the matrix on the right with the given Vector.
On return, for all entries i,j in the matrix, 
.
Implements Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 3779 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Compute the local part of a sparse matrix-(Multi)Vector multiply.
Most Tpetra users want the apply() method (which see), not this method.
This method computes Y := beta*Y + alpha*Op(A)*X, where Op(A) is either 
, 
(the transpose), or 
(the conjugate transpose).
"The local part" means that this method does no communication between processes, even if this is necessary for correctness of the matrix-vector multiply. Use the apply() method if you want to compute mathematical sparse matrix-vector multiply.
This method is mainly of use to Tpetra developers, though some users may find it helpful if they plan to reuse the result of doing an Import on the input MultiVector for several sparse matrix-vector multiplies with matrices that have the same column Map.
If you want to do global (not just local) sparse matrix-vector multiplies with MultiVectors that have different Scalar type than the CrsMatrix, use CrsMatrixMultiplyOp. If you want to do local sparse matrix-vector multiplies with MultiVectors that have different Scalar type than the CrsMatrix (i.e., if you're wondering where the templated localMultiply method went), use LocalCrsMatrixOperator.
The Map of X and mode must satisfy the following:
The Map of Y and mode must satisfy the following:
We say that X is "post-Imported," and that Y is "pre-Exported."
Both X and Y must have constant stride, and they may not alias one another (that is, occupy overlapping space in memory). We may not necessarily check for aliasing, and if we do, we will only do this in a debug build. Aliasing X and Y may cause nondeterministically incorrect results.
If beta == 0, this operation will enjoy overwrite semantics: Y's entries will be ignored, and Y will be overwritten with the result of the multiplication, even if it contains Inf or NaN floating-point entries. Likewise, if alpha == 0, this operation will ignore A and X, even if they contain Inf or NaN floating-point entries.
Definition at line 4992 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Return another CrsMatrix with the same entries, but converted to a different Scalar type T.
Definition at line 5159 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Compute a sparse matrix-MultiVector multiply.
This method computes Y := beta*Y + alpha*Op(A)*X, where Op(A) is either , (the transpose), or (the conjugate transpose).
If beta == 0, this operation will enjoy overwrite semantics: Y's entries will be ignored, and Y will be overwritten with the result of the multiplication, even if it contains NaN (not-a-number) floating-point entries.
Implements Tpetra::Operator< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 5130 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Whether apply() allows applying the transpose or conjugate transpose.
Reimplemented from Tpetra::Operator< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 1050 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The domain Map of this matrix.
This method implements Tpetra::Operator. If fillComplete() has not yet been called at least once on this matrix, or if the matrix was not constructed with a domain Map, then this method returns Teuchos::null.
Implements Tpetra::Operator< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 923 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
The range Map of this matrix.
This method implements Tpetra::Operator. If fillComplete() has not yet been called at least once on this matrix, or if the matrix was not constructed with a domain Map, then this method returns Teuchos::null.
Implements Tpetra::Operator< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 930 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Implementation of RowMatrix::add: return alpha*A + beta*this.
This override of the default implementation ensures that, when called on a CrsMatrix, this method always returns a CrsMatrix of exactly the same type as *this. "Exactly the same
type" means that all the template parameters match, including the fifth template parameter. The input matrix A need not necessarily be a CrsMatrix or a CrsMatrix of the same type as *this, though this method may be able to optimize further in that case.
Reimplemented from Tpetra::RowMatrix< Scalar, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 7430 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
A one-line description of this object.
Reimplemented from Tpetra::DistObject< char, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 5227 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Print this object with the given verbosity level to the given output stream.
Reimplemented from Tpetra::DistObject< char, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 5253 of file Tpetra_CrsMatrix_def.hpp.
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overridevirtualinherited |
Compare the source and target (this) objects for compatibility.
Implements Tpetra::DistObject< char, LocalOrdinal, GlobalOrdinal, Node >.
Definition at line 5489 of file Tpetra_CrsMatrix_def.hpp.
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overrideprotectedvirtualinherited |
DistObject copyAndPermute has multiple overloads – use copyAndPermutes for anything we don't override
Definition at line 6047 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Perform copies and permutations that are local to the calling (MPI) process.
Subclasses must reimplement this function. Its default implementation does nothing. Note that the <t>target object of the Export or Import, namely *this, packs the source object's data.
permuteToLIDs.need_sync_host(), permuteToLIDs.need_sync_device(), permuteFromLIDs.need_sync_host(), and permuteFromLIDs.need_sync_device() are all false.| source | [in] On entry, the source object of the Export or Import operation. |
| numSameIDs | [in] The number of elements that are the same on the source and target objects. These elements live on the same process in both the source and target objects. |
| permuteToLIDs | [in] List of the elements that are permuted. They are listed by their local index (LID) in the destination object. |
| permuteFromLIDs | [in] List of the elements that are permuted. They are listed by their local index (LID) in the source object. |
| CM | [in] CombineMode to be used during copyAndPermute; may or may not be used by the particular object being called; behavior with respect to CombineMode may differ by object. |
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protectedvirtualinherited |
Same as copyAndPermute, but do operations in space.
|
protectedvirtualinherited |
Pack data and metadata for communication (sends).
Subclasses must reimplement this function. Its default implementation does nothing. Note that the <t>target object of the Export or Import, namely *this, packs the source object's data.
exportLIDs.need_sync_host () and exportLIDs.need_sync_device() are both false.| source | [in] Source object for the redistribution. |
| exportLIDs | [in] List of the entries (as local IDs in the source object) that Tpetra will send to other processes. |
| exports | [out] On exit, the packed data to send. Implementations must reallocate this as needed (prefer reusing the existing allocation if possible), and may modify and/or sync this wherever they like. |
| numPacketsPerLID | [out] On exit, the implementation of this method must do one of two things: either set numPacketsPerLID[i] to the number of packets to be packed for exportLIDs[i] and set constantNumPackets to zero, or set constantNumPackets to a nonzero value. If the latter, the implementation must not modify the entries of numPacketsPerLID. If the former, the implementation may sync numPacketsPerLID this wherever it likes, either to host or to device. The allocation belongs to DistObject, not to subclasses; don't be tempted to change this to pass by reference. |
| constantNumPackets | [out] On exit, 0 if the number of packets per LID could differ, else (if nonzero) the number of packets per LID (which must be constant). |
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protectedvirtualinherited |
Same as packAndPrepare, but in an execution space instance.
|
overrideinherited |
Unpack the imported column indices and values, and combine into matrix.
Definition at line 6900 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Perform any unpacking and combining after communication.
Subclasses must reimplement this function. Its default implementation does nothing. Note that the <t>target object of the Export or Import, namely *this, unpacks the received data into itself, possibly modifying its entries.
importLIDs.need_sync_host () and importLIDs.need_sync_device() are both false.| importLIDs | [in] List of the entries (as LIDs in the destination object) we received from other processes. |
| imports | [in/out] On input: Buffer of received data to unpack. DistObject promises nothing about where this is sync'd. Implementations may sync this wherever they like, either to host or to device. The allocation belongs to DistObject, not to subclasses; don't be tempted to change this to pass by reference. |
| numPacketsPerLID | [in/out] On input: If constantNumPackets is zero, then numPacketsPerLID[i] contains the number of packets imported for importLIDs[i]. DistObject promises nothing about where this is sync'd. Implementations may sync this wherever they like, either to host or to device. The allocation belongs to DistObject, not to subclasses; don't be tempted to change this to pass by reference. |
| constantNumPackets | [in] If nonzero, then the number of packets per LID is the same for all entries ("constant") and constantNumPackets is that number. If zero, then numPacketsPerLID[i] is the number of packets to unpack for LID importLIDs[i]. |
| combineMode | [in] The CombineMode to use when combining the imported entries with existing entries. |
|
inherited |
Pack this object's data for an Import or Export.
< DistObject has overloaded unpackAndCombine, use the DistObject's implementation for anything we don't override.
| exportLIDs | [in] Local indices of the rows to pack. |
| exports | [out] On output: array of packed matrix entries; allocated by method. |
| numPacketsPerLID | [out] On output: numPacketsPerLID[i] is the number of bytes of the exports array used for storing packed local row exportLIDs[i]. |
| constantNumPackets | [out] If zero on output, the packed rows may have different numbers of entries. If nonzero on output, then that number gives the constant number of entries for all packed rows on all processes in the matrix's communicator. |
The number of "packets" per row is the number of bytes per row. Each row has the following storage format:
[numEnt, vals, inds],
where:
numEnt (LocalOrdinal): number of entries in the row. vals: array of Scalar. For the k-th entry in the row, vals[k] is its value and inds[k] its global column index. inds: array of GlobalOrdinal. For the k-th entry in the row, vals[k] is its value and inds[k] its global column index. We reserve the right to pad for alignment in the future. In that case, the number of bytes reported by numPacketsPerLID will reflect padding to align each datum to its size, and the row will have final padding as well to ensure that the next row is aligned. Rows with zero entries will still take zero bytes, however.
RowMatrix::pack will always use the same packing scheme as this method. This ensures correct Import / Export from a RowMatrix to a CrsMatrix.
We do not recommend relying on the details of this packing scheme. We describe it here more for Tpetra developers and less for users.
DistObject requires packing an object's entries as type Packet, which is the first template parameter of DistObject. Since sparse matrices have both values and indices, we use Packet=char and pack them into buffers of char (really "byte"). Indices are stored as global indices, in case the source and target matrices have different column Maps (or don't have a column Map yet).
Currently, we only pack values and column indices. Row indices are stored implicitly as the local indices (LIDs) to pack (see exportLIDs). This is because a DistObject instance only has one Map, and currently we use the row Map for CrsMatrix (and RowMatrix). This makes redistribution of matrices with 2-D distributions less efficient, but it works for now. This may change in the future.
On output, numPacketsPerLID[i] gives the number of bytes used to pack local row exportLIDs[i] of this object (the source object of an Import or Export). If offset is the exclusive prefix sum-scan of numPacketsPerLID, then on output, exports[offset[i] .. offset[i+1]] (half-exclusive range) contains the packed entries for local row exportLIDs[i].
Entries for each row use a "struct of arrays" pattern to match how sparse matrices actually store their data. The number of entries in the row goes first, all values go next, and all column indices (stored as global indices) go last. Values and column indices occur in the same order. Rows with zero entries always take zero bytes (we do not store their number of entries explicitly). This ensures sparsity of storage and communication in case most rows are empty.
GCC >= 4.9 and recent-future versions of the Intel compiler implement stricter aliasing rules that forbid unaligned type punning. If we were to pack as an "array of structs" – in this case, an array of (Scalar, GlobalOrdinal) pairs – then we would either have to pad each matrix entry for alignment, or call memcpy twice per matrix entry to pack and unpack. The "struct of arrays" storage scheme reduces the padding requirement to a constant per row, or reduces the number of memcpy calls to two per row.
We include the number of entries in each row in that row's packed data, to make unpacking easier. This saves us from an error-prone computation to find the number of entries from the number of bytes. That computation gets even more difficult if we have to introduce padding for alignment in the future. Knowing the number of entries for each row also makes parallelizing packing and unpacking easier.
Definition at line 6598 of file Tpetra_CrsMatrix_def.hpp.
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inlineinherited |
Get the Kokkos local values on host, read only.
Definition at line 3313 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get the Kokkos local values on host, read write.
Definition at line 3320 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get the Kokkos local values on host, overwrite all.
Definition at line 3327 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get the Kokkos local values on device, read only.
Definition at line 3334 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get the Kokkos local values on device, read write.
Definition at line 3341 of file Tpetra_CrsMatrix_decl.hpp.
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inlineinherited |
Get the Kokkos local values on device, overwrite all.
Definition at line 3348 of file Tpetra_CrsMatrix_decl.hpp.
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inherited |
Import from this to the given destination matrix, and make the result fill complete.
If destMatrix.is_null(), this creates a new matrix as the destination. (This is why destMatrix is passed in by nonconst reference to RCP.) Otherwise it checks for "pristine" status and throws if that is not the case. "Pristine" means that the matrix has no entries and is not fill complete.
Use of the "non-member constructor" version of this method, exportAndFillCompleteCrsMatrix, is preferred for user applications.
Definition at line 9105 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Import from this to the given destination matrix, and make the result fill complete.
If destMatrix.is_null(), this creates a new matrix as the destination. (This is why destMatrix is passed in by nonconst reference to RCP.) Otherwise it checks for "pristine" status and throws if that is not the case. "Pristine" means that the matrix has no entries and is not fill complete.
Use of the "non-member constructor" version of this method, exportAndFillCompleteCrsMatrix, is preferred for user applications.
Definition at line 9117 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Export from this to the given destination matrix, and make the result fill complete.
If destMatrix.is_null(), this creates a new matrix as the destination. (This is why destMatrix is passed in by nonconst reference to RCP.) Otherwise it checks for "pristine" status and throws if that is not the case. "Pristine" means that the matrix has no entries and is not fill complete.
Use of the "non-member constructor" version of this method, exportAndFillCompleteCrsMatrix, is preferred for user applications.
Definition at line 9130 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Export from this to the given destination matrix, and make the result fill complete.
If destMatrix.is_null(), this creates a new matrix as the destination. (This is why destMatrix is passed in by nonconst reference to RCP.) Otherwise it checks for "pristine" status and throws if that is not the case. "Pristine" means that the matrix has no entries and is not fill complete.
Use of the "non-member constructor" version of this method, exportAndFillCompleteCrsMatrix, is preferred for user applications.
Definition at line 9142 of file Tpetra_CrsMatrix_def.hpp.
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protectedvirtualinherited |
Common implementation detail of insertGlobalValues and insertGlobalValuesFiltered.
&graph == this->getCrsGraph ().getRawPtr () rowInfo == graph.getRowInfo (rowInfo.localRow) graph.getRowMap ()->isNodeLocalElement (rowInfo.localRow) ! this->isStaticGraph () Definition at line 1857 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Allocate values (and optionally indices) using the Node.
| gas | [in] If GraphNotYetAllocated, allocate the indices of myGraph_ via allocateIndices(lg) before allocating values. |
| lg | [in] Argument passed into myGraph_->allocateIndices(), if applicable. |
| verbose | [in] Whether to print verbose debugging output. |
Definition at line 1064 of file Tpetra_CrsMatrix_def.hpp.
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staticprotectedinherited |
Merge duplicate row indices in the given row, along with their corresponding values.
This method is only called by sortAndMergeIndicesAndValues(), and only when the matrix owns the graph, not when the matrix was constructed with a const graph.
isStorageOptimized() == false Definition at line 4586 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Sort and merge duplicate local column indices in all rows on the calling process, along with their corresponding values.
isStorageOptimized() == false.| sorted | [in] If true, the column indices in each row on the calling process are already sorted. |
| merged | [in] If true, the column indices in each row on the calling process are already merged. |
Definition at line 4622 of file Tpetra_CrsMatrix_def.hpp.
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inherited |
Returns true if globalConstants have been computed; false otherwise.
Definition at line 4291 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Create a (or fetch a cached) column Map MultiVector.
| X_domainMap | [in] A domain Map Multivector. The returned MultiVector, if nonnull, will have the same number of columns as Y_domainMap. |
| force | [in] Force creating the MultiVector if it hasn't been created already. |
The force parameter is helpful when the domain Map and the column Map are the same (so that normally we wouldn't need the column Map MultiVector), but the following (for example) holds:
We don't test for the above in this method, because it depends on the specific kernel.
Definition at line 7304 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Create a (or fetch a cached) row Map MultiVector.
| Y_rangeMap | [in] A range Map Multivector. The returned MultiVector, if nonnull, will have the same number of columns as Y_rangeMap. |
| force | [in] Force creating the MultiVector if it hasn't been created already. |
The force parameter is helpful when the range Map and the row Map are the same (so that normally we wouldn't need the row Map MultiVector), but one of the following holds:
We don't test for the above in this method, because it depends on the specific kernel.
Definition at line 7361 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Special case of apply() for mode == Teuchos::NO_TRANS.
Definition at line 4682 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Special case of apply() for mode != Teuchos::NO_TRANS.
Definition at line 4849 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Get a const Host view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow).
Definition at line 3104 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Get a const Device view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow).
Definition at line 3132 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Get a non-const Host view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow).
Definition at line 3118 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Get a non-const Device view of the locally owned values row myRow, such that rowinfo = getRowInfo(myRow).
Definition at line 3146 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Swaps the data from *this with the data and maps from crsMatrix.
| matrix | [in/out] a crsMatrix |
Definition at line 765 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Fill data into the local matrix.
This method is only called in fillComplete(), and it is only called if the graph's structure is already fixed (that is, if the matrix does not own the graph).
Definition at line 1553 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Fill data into the local graph and matrix.
This method is only called in fillComplete(), and it is only called if the graph's structure is not already fixed (that is, if the matrix does own the graph).
Definition at line 1174 of file Tpetra_CrsMatrix_def.hpp.
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protectedinherited |
Check that this object's state is sane; throw if it's not.
Definition at line 5190 of file Tpetra_CrsMatrix_def.hpp.
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virtualinherited |
Pack this object's data for an Import or Export.
Subclasses may override this method to speed up or otherwise improve the implementation by exploiting more specific details of the subclass.
Implements Tpetra::Packable< char, LocalOrdinal >.
Definition at line 269 of file Tpetra_RowMatrix_def.hpp.
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virtualinherited |
Whether this operator can return its diagonal.
By default, this returns false. Subclasses must override this method if they can supply a diagonal.
Definition at line 124 of file Tpetra_Operator.hpp.
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inherited |
Import data into this object using an Import object ("forward mode").
The input DistObject is always the source of the data redistribution operation, and the *this object is always the target.
If you don't know the difference between forward and reverse mode, then you probably want forward mode. Use this method with your precomputed Import object if you want to do an Import, else use doExport() with a precomputed Export object.
"Restricted Mode" does two things:
*this, in a "locallyFitted" sense. This cannot be used if (2) is not true, OR there are permutes. The "source" maps still need to match.
| source | [in] The "source" object for redistribution. |
| importer | [in] Precomputed data redistribution plan. Its source Map must be the same as the input DistObject's Map, and its target Map must be the same as this->getMap(). |
| CM | [in] How to combine incoming data with the same global index. |
|
inherited |
Import data into this object using an Export object ("reverse mode").
The input DistObject is always the source of the data redistribution operation, and the *this object is always the target.
If you don't know the difference between forward and reverse mode, then you probably want forward mode. Use the version of doImport() that takes a precomputed Import object in that case.
"Restricted Mode" does two things:
*this, in a "locallyFitted" sense. This cannot be used if (2) is not true, OR there are permutes. The "source" maps still need to match.
| source | [in] The "source" object for redistribution. |
| exporter | [in] Precomputed data redistribution plan. Its target Map must be the same as the input DistObject's Map, and its source Map must be the same as this->getMap(). (Note the difference from forward mode.) |
| CM | [in] How to combine incoming data with the same global index. |
|
inherited |
Export data into this object using an Export object ("forward mode").
The input DistObject is always the source of the data redistribution operation, and the *this object is always the target.
If you don't know the difference between forward and reverse mode, then you probably want forward mode. Use this method with your precomputed Export object if you want to do an Export, else use doImport() with a precomputed Import object.
"Restricted Mode" does two things:
*this, in a "locallyFitted" sense. This cannot be used if (2) is not true, OR there are permutes. The "source" maps still need to match.
| source | [in] The "source" object for redistribution. |
| exporter | [in] Precomputed data redistribution plan. Its source Map must be the same as the input DistObject's Map, and its target Map must be the same as this->getMap(). |
| CM | [in] How to combine incoming data with the same global index. |
|
inherited |
Export data into this object using an Import object ("reverse mode").
The input DistObject is always the source of the data redistribution operation, and the *this object is always the target.
If you don't know the difference between forward and reverse mode, then you probably want forward mode. Use the version of doExport() that takes a precomputed Export object in that case.
"Restricted Mode" does two things:
*this, in a "locallyFitted" sense. This cannot be used if (2) is not true, OR there are permutes. The "source" maps still need to match.
| source | [in] The "source" object for redistribution. |
| importer | [in] Precomputed data redistribution plan. Its target Map must be the same as the input DistObject's Map, and its source Map must be the same as this->getMap(). (Note the difference from forward mode.) |
| CM | [in] How to combine incoming data with the same global index. |
|
inherited |
Whether the data from an import/export operation has arrived, and is ready for the unpack and combine step.
|
inherited |
Whether this is a globally distributed object.
For a definition of "globally distributed" (and its opposite, "locally replicated"), see the documentation of Map's isDistributed() method.
|
inlinevirtualinherited |
The Map describing the parallel distribution of this object.
Note that some Tpetra objects might be distributed using multiple Map objects. For example, CrsMatrix has both a row Map and a column Map. It is up to the subclass to decide which Map to use when invoking the DistObject constructor.
Definition at line 559 of file Tpetra_DistObject_decl.hpp.
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inherited |
Print this object to the given output stream.
We generally assume that all MPI processes can print to the given stream.
|
protectedvirtualinherited |
Whether the implementation's instance promises always to have a constant number of packets per LID (local index), and if so, how many packets per LID there are.
If this method returns zero, the instance says that it might possibly have a different number of packets for each LID (local index) to send or receive. If it returns nonzero, the instance promises that the number of packets is the same for all LIDs, and that the return value is this number of packets per LID.
The default implementation of this method returns zero. This does not affect the behavior of doTransfer() in any way. If a nondefault implementation returns nonzero, doTransfer() will use this information to avoid unnecessary allocation and / or resizing of arrays.
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protectedvirtualinherited |
Redistribute data across (MPI) processes.
| src | [in] The source object, to redistribute into the target object, which is *this object. |
| transfer | [in] The Export or Import object representing the communication pattern. (Details::Transfer is the common base class of these two objects.) |
| modeString | [in] Human-readable string, for verbose debugging output and error output, explaining what function called this method. Example: "doImport (forward)", "doExport (reverse)". |
| revOp | [in] Whether to do a forward or reverse mode redistribution. |
| CM | [in] The combine mode that describes how to combine values that map to the same global ID on the same process. |
|
protectedvirtualinherited |
Reallocate numExportPacketsPerLID_ and/or numImportPacketsPerLID_, if necessary.
| numExportLIDs | [in] Number of entries in the exportLIDs input array argument of doTransfer(). |
| numImportLIDs | [in] Number of entries in the remoteLIDs input array argument of doTransfer(). |
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protectedinherited |
Implementation detail of doTransfer.
LID DualViews come from the Transfer object given to doTransfer. They are always sync'd on both host and device. Users must never attempt to modify or sync them.
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protectedvirtualinherited |
Reallocate imports_ if needed.
This unfortunately must be declared protected, for the same reason that imports_ is declared protected.
| newSize | [in] New size of imports_. |
| verbose | [in] Whether to print verbose debugging output to stderr on every (MPI) process in the communicator. |
| prefix | [in] If verbose is true, then this is a nonnull prefix to print at the beginning of each line of verbose debugging output. Otherwise, not used. |
We don't need a "reallocExportsIfNeeded" method, because exports_ always gets passed into packAndPrepare() by nonconst reference. Thus, that method can resize the DualView without needing to call other DistObject methods.
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related |
Nonmember CrsMatrix constructor that fuses Import and fillComplete().
| CrsMatrixType | A specialization of CrsMatrix. |
A common use case is to create an empty destination CrsMatrix, redistribute from a source CrsMatrix (by an Import or Export operation), then call fillComplete() on the destination CrsMatrix. This constructor fuses these three cases, for an Import redistribution.
Fusing redistribution and fillComplete() exposes potential optimizations. For example, it may make constructing the column Map faster, and it may avoid intermediate unoptimized storage in the destination CrsMatrix. These optimizations may improve performance for specialized kernels like sparse matrix-matrix multiply, as well as for redistributing data after doing load balancing.
The resulting matrix is fill complete (in the sense of isFillComplete()) and has optimized storage (in the sense of isStorageOptimized()). By default, its domain Map is the domain Map of the source matrix, and its range Map is the range Map of the source matrix.
| sourceMatrix | [in] The source matrix from which to import. The source of an Import must have a nonoverlapping distribution. |
| importer | [in] The Import instance containing a precomputed redistribution plan. The source Map of the Import must be the same as the rowMap of sourceMatrix unless the "Reverse Mode" option on the params list, in which case the targetMap of Import must match the rowMap of the sourceMatrix |
| domainMap | [in] Domain Map of the returned matrix. If null, we use the default, which is the domain Map of the source matrix. |
| rangeMap | [in] Range Map of the returned matrix. If null, we use the default, which is the range Map of the source matrix. |
| params | [in/out] Optional list of parameters. If not null, any missing parameters will be filled in with their default values. |
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related |
Nonmember CrsMatrix constructor that fuses Import and fillComplete().
| CrsMatrixType | A specialization of CrsMatrix. |
A common use case is to create an empty destination CrsMatrix, redistribute from a source CrsMatrix (by an Import or Export operation), then call fillComplete() on the destination CrsMatrix. This constructor fuses these three cases, for an Import redistribution.
Fusing redistribution and fillComplete() exposes potential optimizations. For example, it may make constructing the column Map faster, and it may avoid intermediate unoptimized storage in the destination CrsMatrix. These optimizations may improve performance for specialized kernels like sparse matrix-matrix multiply, as well as for redistributing data after doing load balancing.
The resulting matrix is fill complete (in the sense of isFillComplete()) and has optimized storage (in the sense of isStorageOptimized()). By default, its domain Map is the domain Map of the source matrix, and its range Map is the range Map of the source matrix.
| sourceMatrix | [in] The source matrix from which to import. The source of an Import must have a nonoverlapping distribution. |
| rowImporter | [in] The Import instance containing a precomputed redistribution plan. The source Map of the Import must be the same as the rowMap of sourceMatrix unless the "Reverse Mode" option on the params list, in which case the targetMap of Import must match the rowMap of the sourceMatrix |
| domainImporter | [in] The Import instance containing a precomputed redistribution plan. The source Map of the Import must be the same as the domainMap of sourceMatrix unless the "Reverse Mode" option on the params list, in which case the targetMap of Import must match the domainMap of the sourceMatrix |
| domainMap | [in] Domain Map of the returned matrix. |
| rangeMap | [in] Range Map of the returned matrix. |
| params | [in/out] Optional list of parameters. If not null, any missing parameters will be filled in with their default values. |
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related |
Nonmember CrsMatrix constructor that fuses Export and fillComplete().
| CrsMatrixType | A specialization of CrsMatrix. |
For justification, see the documentation of importAndFillCompleteCrsMatrix() (which is the Import analog of this function).
The resulting matrix is fill complete (in the sense of isFillComplete()) and has optimized storage (in the sense of isStorageOptimized()). By default, its domain Map is the domain Map of the source matrix, and its range Map is the range Map of the source matrix.
| sourceMatrix | [in] The source matrix from which to export. Its row Map may be overlapping, since the source of an Export may be overlapping. |
| exporter | [in] The Export instance containing a precomputed redistribution plan. The source Map of the Export must be the same as the row Map of sourceMatrix. |
| domainMap | [in] Domain Map of the returned matrix. If null, we use the default, which is the domain Map of the source matrix. |
| rangeMap | [in] Range Map of the returned matrix. If null, we use the default, which is the range Map of the source matrix. |
| params | [in/out] Optional list of parameters. If not null, any missing parameters will be filled in with their default values. |
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related |
Nonmember CrsMatrix constructor that fuses Export and fillComplete().
| CrsMatrixType | A specialization of CrsMatrix. |
For justification, see the documentation of importAndFillCompleteCrsMatrix() (which is the Import analog of this function).
The resulting matrix is fill complete (in the sense of isFillComplete()) and has optimized storage (in the sense of isStorageOptimized()). By default, its domain Map is the domain Map of the source matrix, and its range Map is the range Map of the source matrix.
| sourceMatrix | [in] The source matrix from which to export. Its row Map may be overlapping, since the source of an Export may be overlapping. |
| rowExporter | [in] The Export instance containing a precomputed redistribution plan. The source Map of the Export must be the same as the row Map of sourceMatrix. |
| domainExporter | [in] The Export instance containing a precomputed redistribution plan. The source Map of the Export must be the same as the domain Map of sourceMatrix. |
| domainMap | [in] Domain Map of the returned matrix. |
| rangeMap | [in] Range Map of the returned matrix. |
| params | [in/out] Optional list of parameters. If not null, any missing parameters will be filled in with their default values. |
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related |
Create an empty CrsMatrix given a row map and a single integer upper bound on the number of stored entries per row.
Definition at line 4120 of file Tpetra_CrsMatrix_decl.hpp.
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related |
Remove zero entries from a matrix.
| matrix | [in/out] CrsMatrix |
| threshold | [in] magnitude threshold below which an entry is deemed to be zero |
Definition at line 4221 of file Tpetra_CrsMatrix_decl.hpp.
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mutableprotectedinherited |
local_ordinal typed version of local matrix's rowptrs. This allows the LocalCrsMatrixOperator to have rowptrs and entries be the same type, so cuSPARSE SpMV (including merge-path) can be used for apply. This is allocated and populated lazily in getLocalMultiplyOperator(), only if all 4 conditions are met:
Definition at line 2551 of file Tpetra_CrsMatrix_decl.hpp.
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mutableprotectedinherited |
Column Map MultiVector used in apply().
This is a column Map MultiVector. It is used as the target of the forward mode Import operation (if necessary) in apply(), and the source of the reverse mode Export operation (if necessary) in these methods. Both of these methods create this MultiVector on demand if needed, and reuse it (if possible) for subsequent calls.
This is declared mutable because the methods in question are const, yet want to cache the MultiVector for later use.
Definition at line 3825 of file Tpetra_CrsMatrix_decl.hpp.
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mutableprotectedinherited |
Row Map MultiVector used in apply().
This is a row Map MultiVector. It is uses as the source of the forward mode Export operation (if necessary) in apply(), and the target of the reverse mode Import operation (if necessary) in these methods. Both of these methods create this MultiVector on demand if needed, and reuse it (if possible) for subsequent calls.
This is declared mutable because the methods in question are const, yet want to cache the MultiVector for later use.
Definition at line 3839 of file Tpetra_CrsMatrix_decl.hpp.
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protectedinherited |
Status of the matrix's storage, when not in a fill-complete state.
The phrase "When not in a fill-complete state" is important. When the matrix is fill complete, it always uses 1-D "packed" storage. However, if the "Optimize Storage" parameter to fillComplete was false, the matrix may keep unpacked 1-D storage around and resume it on the next resumeFill call.
Definition at line 4028 of file Tpetra_CrsMatrix_decl.hpp.
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protectedinherited |
Whether the matrix is fill complete.
Definition at line 4032 of file Tpetra_CrsMatrix_decl.hpp.
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protectedinherited |
Nonlocal data added using insertGlobalValues().
These data are cleared by globalAssemble(), once it finishes redistributing them to their owning processes.
For a given nonowned global row gRow which was given to insertGlobalValues() or sumIntoGlobalValues(), nonlocals_[gRow].first[k] is the column index of an inserted entry, and nonlocals_[gRow].second[k] is its value. Duplicate column indices for the same row index are allowed and will be summed during globalAssemble().
This used to be a map from GlobalOrdinal to (GlobalOrdinal, Scalar) pairs. This makes gcc issue a "note" about the ABI of structs containing std::complex members changing. CDash reports this as a warning, even though it's a "note," not a warning. However, I don't want it to show up, so I rearranged the map's value type to a pair of arrays, rather than an array of pairs.
Definition at line 4062 of file Tpetra_CrsMatrix_decl.hpp.
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protectedinherited |
The Map over which this object is distributed.
Definition at line 968 of file Tpetra_DistObject_decl.hpp.
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protectedinherited |
Buffer into which packed data are imported (received from other processes).
Unfortunately, I had to declare these protected, because CrsMatrix uses them at one point. Please, nobody else use them.
Definition at line 981 of file Tpetra_DistObject_decl.hpp.
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protectedinherited |
Number of packets to receive for each receive operation.
This array is used in Distributor::doPosts() (and doReversePosts()) when starting the ireceive operation.
This may be ignored in doTransfer() if constantNumPackets is nonzero, indicating a constant number of packets per LID. (For example, MultiVector sets the constantNumPackets output argument of packAndPrepare() to the number of columns in the multivector.)
Unfortunately, I had to declare this protected, because CrsMatrix uses it at one point. Please, nobody else use it.
Definition at line 1021 of file Tpetra_DistObject_decl.hpp.
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protectedinherited |
Buffer from which packed data are exported (sent to other processes).
Unfortunately, I had to declare this protected, because CrsMatrix uses it at one point. Please, nobody else use it.
Definition at line 1028 of file Tpetra_DistObject_decl.hpp.
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protectedinherited |
Number of packets to send for each send operation.
This array is used in Distributor::doPosts() (and doReversePosts()) for preparing for the send operation.
This may be ignored in doTransfer() if constantNumPackets is nonzero, indicating a constant number of packets per LID. (For example, MultiVector sets the constantNumPackets output argument of packAndPrepare() to the number of columns in the multivector.)
Unfortunately, I had to declare this protected, because CrsMatrix uses them at one point. Please, nobody else use it.
Definition at line 1043 of file Tpetra_DistObject_decl.hpp.
1.8.5