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Tpetra_CrsGraph_decl.hpp
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1 // @HEADER
2 // *****************************************************************************
3 // Tpetra: Templated Linear Algebra Services Package
4 //
5 // Copyright 2008 NTESS and the Tpetra contributors.
6 // SPDX-License-Identifier: BSD-3-Clause
7 // *****************************************************************************
8 // @HEADER
9 
10 // clang-format off
11 #ifndef TPETRA_CRSGRAPH_DECL_HPP
12 #define TPETRA_CRSGRAPH_DECL_HPP
13 
16 
17 #include "Tpetra_CrsGraph_fwd.hpp"
18 #include "Tpetra_CrsMatrix_fwd.hpp"
20 #include "Tpetra_DistObject.hpp"
21 #include "Tpetra_Exceptions.hpp"
22 #include "Tpetra_RowGraph.hpp"
23 #include "Tpetra_Util.hpp" // need this here for sort2
24 #include "Tpetra_Details_WrappedDualView.hpp"
25 
26 #include "KokkosSparse_findRelOffset.hpp"
27 #include "Kokkos_DualView.hpp"
28 #include "Kokkos_StaticCrsGraph.hpp"
29 
30 #include "Teuchos_CommHelpers.hpp"
31 #include "Teuchos_Describable.hpp"
32 #include "Teuchos_OrdinalTraits.hpp"
33 #include "Teuchos_ParameterListAcceptorDefaultBase.hpp"
34 
35 #include <functional> // std::function
36 #include <memory>
37 
38 namespace Tpetra {
39 
40 
41  // Forward declaration for CrsGraph::swap() test
42  template<class LocalOrdinal, class GlobalOrdinal, class Node> class crsGraph_Swap_Tester;
43 
44 #ifndef DOXYGEN_SHOULD_SKIP_THIS
45  namespace Details {
46  template<class LocalOrdinal,
47  class GlobalOrdinal>
48  class CrsPadding;
49  } // namespace Details
50 
51  namespace { // (anonymous)
52 
53  template<class ViewType>
54  struct UnmanagedView {
55  static_assert (Kokkos::is_view<ViewType>::value,
56  "ViewType must be a Kokkos::View specialization.");
57  // FIXME (mfh 02 Dec 2015) Right now, this strips away other
58  // memory traits. Christian will add an "AllTraits" enum which is
59  // the enum value of MemoryTraits<T>, that will help us fix this.
60  typedef Kokkos::View<typename ViewType::data_type,
61  typename ViewType::array_layout,
62  typename ViewType::device_type,
63  Kokkos::MemoryUnmanaged> type;
64  };
65 
66  } // namespace (anonymous)
67 #endif // DOXYGEN_SHOULD_SKIP_THIS
68 
77  struct RowInfo {
78  size_t localRow;
79  size_t allocSize;
80  size_t numEntries;
81  size_t offset1D;
82  };
83 
84  enum ELocalGlobal {
85  LocalIndices,
86  GlobalIndices
87  };
88 
89  namespace Details {
121  STORAGE_1D_UNPACKED, //<! 1-D "unpacked" storage
122  STORAGE_1D_PACKED, //<! 1-D "packed" storage
123  STORAGE_UB //<! Invalid value; upper bound on enum values
124  };
125 
126  } // namespace Details
127 
186  template <class LocalOrdinal,
187  class GlobalOrdinal,
188  class Node>
189  class CrsGraph :
190  public RowGraph<LocalOrdinal, GlobalOrdinal, Node>,
191  public DistObject<GlobalOrdinal,
192  LocalOrdinal,
193  GlobalOrdinal,
194  Node>,
195  public Teuchos::ParameterListAcceptorDefaultBase
196  {
197  template <class S, class LO, class GO, class N>
198  friend class CrsMatrix;
199  template <class LO2, class GO2, class N2>
200  friend class CrsGraph;
201  template <class LO, class GO, class N>
202  friend class FECrsGraph;
203 
206 
207  public:
209  using local_ordinal_type = LocalOrdinal;
211  using global_ordinal_type = GlobalOrdinal;
213  using device_type = typename Node::device_type;
215  using execution_space = typename device_type::execution_space;
216 
221  using node_type = Node;
222 
225  Kokkos::StaticCrsGraph<local_ordinal_type, Kokkos::LayoutLeft,
226  device_type, void, size_t>;
227 
229  using local_graph_host_type = typename local_graph_device_type::HostMirror;
230 
237 
238 public:
239  // Types used for CrsGraph's storage of local column indices
240  using local_inds_dualv_type =
241  Kokkos::DualView<local_ordinal_type*, device_type>;
242  using local_inds_wdv_type =
244 
245  // Types used for CrsGraph's storage of global column indices
246  using global_inds_dualv_type =
247  Kokkos::DualView<global_ordinal_type*, device_type>;
248  using global_inds_wdv_type =
250 
251 public:
253  using row_ptrs_device_view_type =
254  typename row_graph_type::row_ptrs_device_view_type;
255  using row_ptrs_host_view_type =
256  typename row_graph_type::row_ptrs_host_view_type;
257 
260  typename row_graph_type::local_inds_device_view_type;
261  using local_inds_host_view_type =
262  typename row_graph_type::local_inds_host_view_type;
263  using nonconst_local_inds_host_view_type =
264  typename row_graph_type::nonconst_local_inds_host_view_type;
265 
268  typename row_graph_type::global_inds_device_view_type;
269  using global_inds_host_view_type =
270  typename row_graph_type::global_inds_host_view_type;
271  using nonconst_global_inds_host_view_type =
272  typename row_graph_type::nonconst_global_inds_host_view_type;
273 
274  using offset_device_view_type =
275  typename row_ptrs_device_view_type::non_const_type;
276 
278 
279 
292  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
293  const size_t maxNumEntriesPerRow,
294  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
295 
308  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
309  const Kokkos::DualView<const size_t*, device_type>& numEntPerRow,
310  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
311 
325  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
326  const Teuchos::ArrayView<const size_t>& numEntPerRow,
327  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
328 
329 
342 
346  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
347  const Teuchos::RCP<const map_type>& colMap,
348  const size_t maxNumEntriesPerRow,
349  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
350 
365  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
366  const Teuchos::RCP<const map_type>& colMap,
367  const Kokkos::DualView<const size_t*, device_type>& numEntPerRow,
368  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
369 
385  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
386  const Teuchos::RCP<const map_type>& colMap,
387  const Teuchos::ArrayView<const size_t>& numEntPerRow,
388  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
389 
390 
403  const Teuchos::RCP<const map_type>& rowMap,
404  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
405 
428  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
429  const Teuchos::RCP<const map_type>& colMap,
430  const typename local_graph_device_type::row_map_type& rowPointers,
431  const typename local_graph_device_type::entries_type::non_const_type& columnIndices,
432  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
433 
456  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
457  const Teuchos::RCP<const map_type>& colMap,
458  const Teuchos::ArrayRCP<size_t>& rowPointers,
459  const Teuchos::ArrayRCP<local_ordinal_type>& columnIndices,
460  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
461 
483  CrsGraph (const Teuchos::RCP<const map_type>& rowMap,
484  const Teuchos::RCP<const map_type>& colMap,
485  const local_graph_device_type& lclGraph,
486  const Teuchos::RCP<Teuchos::ParameterList>& params);
487 
514  CrsGraph (const local_graph_device_type& lclGraph,
515  const Teuchos::RCP<const map_type>& rowMap,
516  const Teuchos::RCP<const map_type>& colMap,
517  const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
518  const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
519  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
520 
525  CrsGraph (const local_graph_device_type& lclGraph,
526  const Teuchos::RCP<const map_type>& rowMap,
527  const Teuchos::RCP<const map_type>& colMap,
528  const Teuchos::RCP<const map_type>& domainMap,
529  const Teuchos::RCP<const map_type>& rangeMap,
530  const Teuchos::RCP<const import_type>& importer,
531  const Teuchos::RCP<const export_type>& exporter,
532  const Teuchos::RCP<Teuchos::ParameterList>& params =
533  Teuchos::null);
534 
576  CrsGraph (const row_ptrs_device_view_type& rowPointers,
577  const local_inds_wdv_type& columnIndices,
578  const Teuchos::RCP<const map_type>& rowMap,
579  const Teuchos::RCP<const map_type>& colMap,
580  const Teuchos::RCP<const map_type>& domainMap,
581  const Teuchos::RCP<const map_type>& rangeMap,
582  const Teuchos::RCP<const import_type>& importer,
583  const Teuchos::RCP<const export_type>& exporter,
584  const Teuchos::RCP<Teuchos::ParameterList>& params =
585  Teuchos::null);
586 
589 
592 
595 
598 
608  virtual ~CrsGraph () = default;
609 
637 
655 
657 
659 
661  void
662  setParameterList (const Teuchos::RCP<Teuchos::ParameterList>& params) override;
663 
665  Teuchos::RCP<const Teuchos::ParameterList>
666  getValidParameters () const override;
667 
669 
671 
693  void
694  insertGlobalIndices (const global_ordinal_type globalRow,
695  const Teuchos::ArrayView<const global_ordinal_type>& indices);
696 
703  void
704  insertGlobalIndices (const global_ordinal_type globalRow,
705  const local_ordinal_type numEnt,
706  const global_ordinal_type inds[]);
707 
709 
723  void
724  insertLocalIndices (const local_ordinal_type localRow,
725  const Teuchos::ArrayView<const local_ordinal_type>& indices);
726 
733  void
734  insertLocalIndices (const local_ordinal_type localRow,
735  const local_ordinal_type numEnt,
736  const local_ordinal_type inds[]);
737 
739 
748  void removeLocalIndices (local_ordinal_type localRow);
749 
751 
753 
761  void globalAssemble ();
762 
781  void
782  resumeFill (const Teuchos::RCP<Teuchos::ParameterList>& params =
783  Teuchos::null);
784 
822  void
823  fillComplete (const Teuchos::RCP<const map_type>& domainMap,
824  const Teuchos::RCP<const map_type>& rangeMap,
825  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
826 
854  void
855  fillComplete (const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
856 
885  void
886  expertStaticFillComplete (const Teuchos::RCP<const map_type>& domainMap,
887  const Teuchos::RCP<const map_type>& rangeMap,
888  const Teuchos::RCP<const import_type>& importer =
889  Teuchos::null,
890  const Teuchos::RCP<const export_type>& exporter =
891  Teuchos::null,
892  const Teuchos::RCP<Teuchos::ParameterList>& params =
893  Teuchos::null);
895 
897 
899  Teuchos::RCP<const Teuchos::Comm<int> > getComm() const override;
900 
901 
903  Teuchos::RCP<const map_type> getRowMap () const override;
904 
906  Teuchos::RCP<const map_type> getColMap () const override;
907 
909  Teuchos::RCP<const map_type> getDomainMap () const override;
910 
912  Teuchos::RCP<const map_type> getRangeMap () const override;
913 
915  Teuchos::RCP<const import_type> getImporter () const override;
916 
918  Teuchos::RCP<const export_type> getExporter () const override;
919 
921 
923  global_size_t getGlobalNumRows() const override;
924 
926 
929  global_size_t getGlobalNumCols () const override;
930 
932  size_t getLocalNumRows () const override;
933 
935 
937  size_t getLocalNumCols () const override;
938 
940  global_ordinal_type getIndexBase () const override;
941 
943 
945  global_size_t getGlobalNumEntries () const override;
946 
956  size_t getLocalNumEntries() const override;
957 
959 
960  size_t
961  getNumEntriesInGlobalRow (global_ordinal_type globalRow) const override;
962 
969  size_t
970  getNumEntriesInLocalRow (local_ordinal_type localRow) const override;
971 
991  size_t getLocalAllocationSize () const;
992 
1000  size_t getNumAllocatedEntriesInGlobalRow (global_ordinal_type globalRow) const;
1001 
1009  size_t getNumAllocatedEntriesInLocalRow (local_ordinal_type localRow) const;
1010 
1024  size_t getGlobalMaxNumRowEntries () const override;
1025 
1030  size_t getLocalMaxNumRowEntries () const override;
1031 
1047  bool hasColMap () const override;
1048 
1049 
1057  bool isLocallyIndexed () const override;
1058 
1066  bool isGloballyIndexed () const override;
1067 
1069  bool isFillComplete () const override;
1070 
1072  bool isFillActive () const;
1073 
1081  bool isSorted () const;
1082 
1084 
1090  bool isStorageOptimized () const;
1091 
1092 
1098  void
1100  nonconst_global_inds_host_view_type &gblColInds,
1101  size_t& numColInds) const override;
1102 
1110  void
1112  nonconst_local_inds_host_view_type &gblColInds,
1113  size_t& numColInds) const override;
1114 
1125  void
1127  const global_ordinal_type gblRow,
1128  global_inds_host_view_type &gblColInds) const override;
1129 
1130 
1133  bool supportsRowViews () const override;
1134 
1135 
1146  void
1147  getLocalRowView (
1148  const LocalOrdinal lclRow,
1149  local_inds_host_view_type &lclColInds) const override;
1150 
1151 
1153 
1155 
1157  std::string description () const override;
1158 
1161  void
1162  describe (Teuchos::FancyOStream& out,
1163  const Teuchos::EVerbosityLevel verbLevel =
1164  Teuchos::Describable::verbLevel_default) const override;
1165 
1167 
1169 
1177 
1178  virtual bool
1179  checkSizes (const SrcDistObject& source) override;
1180 
1181  // clang-format on
1182  using dist_object_type::
1184  // clang-format off
1186 
1187  virtual void
1189  (const SrcDistObject& source,
1190  const size_t numSameIDs,
1191  const Kokkos::DualView<const local_ordinal_type*,
1192  buffer_device_type>& permuteToLIDs,
1193  const Kokkos::DualView<const local_ordinal_type*,
1194  buffer_device_type>& permuteFromLIDs,
1195  const CombineMode CM) override;
1196 
1199 
1200  void
1201  applyCrsPadding(const padding_type& padding,
1202  const bool verbose);
1203 
1204  std::unique_ptr<padding_type>
1205  computeCrsPadding(
1207  node_type>& source,
1208  const size_t numSameIDs,
1209  const Kokkos::DualView<const local_ordinal_type*,
1210  buffer_device_type>& permuteToLIDs,
1211  const Kokkos::DualView<const local_ordinal_type*,
1212  buffer_device_type>& permuteFromLIDs,
1213  const bool verbose) const;
1214 
1215  // This actually modifies imports by sorting it.
1216  std::unique_ptr<padding_type>
1217  computeCrsPaddingForImports(
1218  const Kokkos::DualView<const local_ordinal_type*,
1219  buffer_device_type>& importLIDs,
1220  Kokkos::DualView<packet_type*, buffer_device_type> imports,
1221  Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1222  const bool verbose) const;
1223 
1224  std::unique_ptr<padding_type>
1225  computePaddingForCrsMatrixUnpack(
1226  const Kokkos::DualView<const local_ordinal_type*,
1227  buffer_device_type>& importLIDs,
1228  Kokkos::DualView<char*, buffer_device_type> imports,
1229  Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1230  const bool verbose) const;
1231 
1232  void
1233  computeCrsPaddingForSameIDs(
1234  padding_type& padding,
1236  node_type>& source,
1237  const local_ordinal_type numSameIDs) const;
1238 
1239  void
1240  computeCrsPaddingForPermutedIDs(
1241  padding_type& padding,
1243  node_type>& source,
1244  const Kokkos::DualView<const local_ordinal_type*,
1245  buffer_device_type>& permuteToLIDs,
1246  const Kokkos::DualView<const local_ordinal_type*,
1247  buffer_device_type>& permuteFromLIDs) const;
1248 
1249  virtual void
1250  packAndPrepare(
1251  const SrcDistObject& source,
1252  const Kokkos::DualView<const local_ordinal_type*, buffer_device_type>& exportLIDs,
1253  Kokkos::DualView<packet_type*, buffer_device_type>& exports,
1254  Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1255  size_t& constantNumPackets) override;
1256 
1257  // clang-format on
1259  // clang-format off
1263 
1264  virtual void
1265  pack (const Teuchos::ArrayView<const local_ordinal_type>& exportLIDs,
1266  Teuchos::Array<global_ordinal_type>& exports,
1267  const Teuchos::ArrayView<size_t>& numPacketsPerLID,
1268  size_t& constantNumPackets) const override;
1269 
1270  void
1271  packFillActive (const Teuchos::ArrayView<const local_ordinal_type>& exportLIDs,
1272  Teuchos::Array<global_ordinal_type>& exports,
1273  const Teuchos::ArrayView<size_t>& numPacketsPerLID,
1274  size_t& constantNumPackets) const;
1275 
1276  void
1277  packFillActiveNew (const Kokkos::DualView<const local_ordinal_type*,
1278  buffer_device_type>& exportLIDs,
1279  Kokkos::DualView<packet_type*,
1280  buffer_device_type>& exports,
1281  Kokkos::DualView<size_t*,
1282  buffer_device_type> numPacketsPerLID,
1283  size_t& constantNumPackets) const;
1284 
1285  // clang-format on
1287  // clang-format off
1291 
1292  virtual void
1294  (const Kokkos::DualView<const local_ordinal_type*,
1295  buffer_device_type>& importLIDs,
1296  Kokkos::DualView<packet_type*,
1297  buffer_device_type> imports,
1298  Kokkos::DualView<size_t*,
1299  buffer_device_type> numPacketsPerLID,
1300  const size_t constantNumPackets,
1301  const CombineMode combineMode) override;
1302 
1304 
1306 
1349  void
1350  getLocalDiagOffsets (const Kokkos::View<size_t*, device_type, Kokkos::MemoryUnmanaged>& offsets) const;
1351 
1353  void
1354  getLocalOffRankOffsets (offset_device_view_type& offsets) const;
1355 
1365  void
1366  getLocalDiagOffsets (Teuchos::ArrayRCP<size_t>& offsets) const;
1367 
1377  void
1378  setAllIndices (const typename local_graph_device_type::row_map_type& rowPointers,
1379  const typename local_graph_device_type::entries_type::non_const_type& columnIndices);
1380 
1390  void
1391  setAllIndices (const Teuchos::ArrayRCP<size_t> & rowPointers,
1392  const Teuchos::ArrayRCP<local_ordinal_type> & columnIndices);
1393 
1396  row_ptrs_host_view_type getLocalRowPtrsHost () const;
1397 
1400  row_ptrs_device_view_type getLocalRowPtrsDevice () const;
1401 
1403  local_inds_host_view_type getLocalIndicesHost () const;
1404 
1407 
1426  void replaceColMap (const Teuchos::RCP<const map_type>& newColMap);
1427 
1447  void
1448  reindexColumns (const Teuchos::RCP<const map_type>& newColMap,
1449  const Teuchos::RCP<const import_type>& newImport = Teuchos::null,
1450  const bool sortIndicesInEachRow = true);
1451 
1458  void
1459  replaceDomainMap (const Teuchos::RCP<const map_type>& newDomainMap);
1460 
1474  void
1475  replaceDomainMapAndImporter (const Teuchos::RCP<const map_type>& newDomainMap,
1476  const Teuchos::RCP<const import_type>& newImporter);
1477 
1484  void
1485  replaceRangeMap (const Teuchos::RCP<const map_type>& newRangeMap);
1486 
1500  void
1501  replaceRangeMapAndExporter (const Teuchos::RCP<const map_type>& newRangeMap,
1502  const Teuchos::RCP<const export_type>& newExporter);
1503 
1532  virtual void
1533  removeEmptyProcessesInPlace (const Teuchos::RCP<const map_type>& newMap) override;
1535 
1536  template<class DestViewType, class SrcViewType,
1537  class DestOffsetViewType, class SrcOffsetViewType >
1538  struct pack_functor {
1539  typedef typename DestViewType::execution_space execution_space;
1540  SrcViewType src;
1541  DestViewType dest;
1542  SrcOffsetViewType src_offset;
1543  DestOffsetViewType dest_offset;
1544  typedef typename DestOffsetViewType::non_const_value_type ScalarIndx;
1545 
1546  pack_functor(DestViewType dest_,
1547  const SrcViewType src_,
1548  DestOffsetViewType dest_offset_,
1549  const SrcOffsetViewType src_offset_):
1550  src(src_),dest(dest_),
1551  src_offset(src_offset_),dest_offset(dest_offset_) {};
1552 
1553  KOKKOS_INLINE_FUNCTION
1554  void operator() (size_t row) const {
1555  ScalarIndx i = src_offset(row);
1556  ScalarIndx j = dest_offset(row);
1557  const ScalarIndx k = dest_offset(row+1);
1558  for(;j<k;j++,i++) {
1559  dest(j) = src(i);
1560  }
1561  }
1562  };
1563 
1564  private:
1565  // Friend declaration for nonmember function.
1566  template<class CrsGraphType>
1567  friend Teuchos::RCP<CrsGraphType>
1568  importAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1569  const Import<typename CrsGraphType::local_ordinal_type,
1570  typename CrsGraphType::global_ordinal_type,
1571  typename CrsGraphType::node_type>& importer,
1572  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1573  typename CrsGraphType::global_ordinal_type,
1574  typename CrsGraphType::node_type> >& domainMap,
1575  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1576  typename CrsGraphType::global_ordinal_type,
1577  typename CrsGraphType::node_type> >& rangeMap,
1578  const Teuchos::RCP<Teuchos::ParameterList>& params);
1579 
1580  // Friend declaration for nonmember function.
1581  template<class CrsGraphType>
1582  friend Teuchos::RCP<CrsGraphType>
1583  importAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1584  const Import<typename CrsGraphType::local_ordinal_type,
1585  typename CrsGraphType::global_ordinal_type,
1586  typename CrsGraphType::node_type>& rowImporter,
1587  const Import<typename CrsGraphType::local_ordinal_type,
1588  typename CrsGraphType::global_ordinal_type,
1589  typename CrsGraphType::node_type>& domainImporter,
1590  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1591  typename CrsGraphType::global_ordinal_type,
1592  typename CrsGraphType::node_type> >& domainMap,
1593  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1594  typename CrsGraphType::global_ordinal_type,
1595  typename CrsGraphType::node_type> >& rangeMap,
1596  const Teuchos::RCP<Teuchos::ParameterList>& params);
1597 
1598 
1599  // Friend declaration for nonmember function.
1600  template<class CrsGraphType>
1601  friend Teuchos::RCP<CrsGraphType>
1602  exportAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1603  const Export<typename CrsGraphType::local_ordinal_type,
1604  typename CrsGraphType::global_ordinal_type,
1605  typename CrsGraphType::node_type>& exporter,
1606  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1607  typename CrsGraphType::global_ordinal_type,
1608  typename CrsGraphType::node_type> >& domainMap,
1609  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1610  typename CrsGraphType::global_ordinal_type,
1611  typename CrsGraphType::node_type> >& rangeMap,
1612  const Teuchos::RCP<Teuchos::ParameterList>& params);
1613 
1614  // Friend declaration for nonmember function.
1615  template<class CrsGraphType>
1616  friend Teuchos::RCP<CrsGraphType>
1617  exportAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1618  const Export<typename CrsGraphType::local_ordinal_type,
1619  typename CrsGraphType::global_ordinal_type,
1620  typename CrsGraphType::node_type>& rowExporter,
1621  const Export<typename CrsGraphType::local_ordinal_type,
1622  typename CrsGraphType::global_ordinal_type,
1623  typename CrsGraphType::node_type>& domainExporter,
1624  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1625  typename CrsGraphType::global_ordinal_type,
1626  typename CrsGraphType::node_type> >& domainMap,
1627  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1628  typename CrsGraphType::global_ordinal_type,
1629  typename CrsGraphType::node_type> >& rangeMap,
1630  const Teuchos::RCP<Teuchos::ParameterList>& params);
1631 
1632  public:
1648  void
1649  importAndFillComplete (Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node> >& destGraph,
1650  const import_type& importer,
1651  const Teuchos::RCP<const map_type>& domainMap,
1652  const Teuchos::RCP<const map_type>& rangeMap,
1653  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1654 
1670  void
1671  importAndFillComplete (Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node> >& destGraph,
1672  const import_type& rowImporter,
1673  const import_type& domainImporter,
1674  const Teuchos::RCP<const map_type>& domainMap,
1675  const Teuchos::RCP<const map_type>& rangeMap,
1676  const Teuchos::RCP<Teuchos::ParameterList>& params) const;
1677 
1678 
1694  void
1695  exportAndFillComplete (Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node> >& destGraph,
1696  const export_type& exporter,
1697  const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
1698  const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
1699  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1700 
1716  void
1717  exportAndFillComplete (Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node> >& destGraph,
1718  const export_type& rowExporter,
1719  const export_type& domainExporter,
1720  const Teuchos::RCP<const map_type>& domainMap,
1721  const Teuchos::RCP<const map_type>& rangeMap,
1722  const Teuchos::RCP<Teuchos::ParameterList>& params) const;
1723 
1724 
1725  private:
1746  void
1747  transferAndFillComplete (Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node> >& destGraph,
1748  const ::Tpetra::Details::Transfer<local_ordinal_type, global_ordinal_type, Node>& rowTransfer,
1749  const Teuchos::RCP<const ::Tpetra::Details::Transfer<local_ordinal_type, global_ordinal_type, Node> > & domainTransfer,
1750  const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
1751  const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
1752  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1753 
1754  protected:
1755  // these structs are conveniences, to cut down on the number of
1756  // arguments to some of the methods below.
1757  struct SLocalGlobalViews {
1758  Teuchos::ArrayView<const global_ordinal_type> ginds;
1759  Teuchos::ArrayView<const local_ordinal_type> linds;
1760  };
1761  struct SLocalGlobalNCViews {
1762  Teuchos::ArrayView<global_ordinal_type> ginds;
1763  Teuchos::ArrayView<local_ordinal_type> linds;
1764  };
1765 
1766  bool indicesAreAllocated () const;
1767 
1768  void
1769  allocateIndices(const ELocalGlobal lg, const bool verbose=false);
1770 
1772 
1773 
1783  void makeColMap (Teuchos::Array<int>& remotePIDs);
1784 
1805  std::pair<size_t, std::string>
1806  makeIndicesLocal(const bool verbose=false);
1807 
1816  void
1817  makeImportExport (Teuchos::Array<int>& remotePIDs,
1818  const bool useRemotePIDs);
1819 
1821 
1823 
1858  size_t
1859  insertIndices (RowInfo& rowInfo,
1860  const SLocalGlobalViews& newInds,
1861  const ELocalGlobal lg,
1862  const ELocalGlobal I);
1863 
1873  size_t
1875  const global_ordinal_type inputGblColInds[],
1876  const size_t numInputInds);
1877 
1887  size_t
1888  insertGlobalIndicesImpl (const RowInfo& rowInfo,
1889  const global_ordinal_type inputGblColInds[],
1890  const size_t numInputInds,
1891  std::function<void(const size_t, const size_t, const size_t)> fun =
1892  std::function<void(const size_t, const size_t, const size_t)>());
1893 
1894  void
1895  insertLocalIndicesImpl (const local_ordinal_type lclRow,
1896  const Teuchos::ArrayView<const local_ordinal_type>& gblColInds,
1897  std::function<void(const size_t, const size_t, const size_t)> fun =
1898  std::function<void(const size_t, const size_t, const size_t)>());
1899 
1915  size_t
1916  findGlobalIndices(const RowInfo& rowInfo,
1917  const Teuchos::ArrayView<const global_ordinal_type>& indices,
1918  std::function<void(const size_t, const size_t, const size_t)> fun) const;
1919 
1931  void
1933  const global_ordinal_type gblColInds[],
1934  const local_ordinal_type numGblColInds);
1935 
1947  void
1949  const global_ordinal_type gblColInds[],
1950  const local_ordinal_type numGblColInds);
1951 
1956  static const bool useAtomicUpdatesByDefault =
1957 #ifdef KOKKOS_ENABLE_SERIAL
1958  ! std::is_same<execution_space, Kokkos::Serial>::value;
1959 #else
1960  true;
1961 #endif // KOKKOS_ENABLE_SERIAL
1962 
1964 
1966 
1968  bool isMerged () const;
1969 
1975  void setLocallyModified ();
1976 
1977  private:
1982  void
1983  sortAndMergeAllIndices (const bool sorted, const bool merged);
1984 
1985  // mfh 08 May 2017: I only restore "protected" here for backwards
1986  // compatibility.
1987  protected:
1996  size_t sortAndMergeRowIndices (const RowInfo& rowInfo,
1997  const bool sorted,
1998  const bool merged);
2000 
2010  void
2011  setDomainRangeMaps (const Teuchos::RCP<const map_type>& domainMap,
2012  const Teuchos::RCP<const map_type>& rangeMap);
2013 
2014  void staticAssertions() const;
2015  void clearGlobalConstants();
2016 
2017  public:
2020 
2038  void computeGlobalConstants ();
2039 
2040  bool haveLocalOffRankOffsets() const { return haveLocalOffRankOffsets_;}
2041 
2042  protected:
2062  void computeLocalConstants ();
2063 
2066  RowInfo getRowInfo (const local_ordinal_type myRow) const;
2067 
2080  RowInfo getRowInfoFromGlobalRowIndex (const global_ordinal_type gblRow) const;
2081 
2082  public:
2083 
2092  local_graph_host_type getLocalGraphHost () const;
2093 
2094  protected:
2095 
2096  void fillLocalGraph (const Teuchos::RCP<Teuchos::ParameterList>& params);
2097 
2099  void checkInternalState () const;
2100 
2104  void swap(CrsGraph<local_ordinal_type, global_ordinal_type, Node> & graph);
2105 
2106  // Friend the tester for CrsGraph::swap
2107  friend class Tpetra::crsGraph_Swap_Tester<local_ordinal_type, global_ordinal_type, Node>;
2108 
2109 
2111  Teuchos::RCP<const map_type> rowMap_;
2113  Teuchos::RCP<const map_type> colMap_;
2115  Teuchos::RCP<const map_type> rangeMap_;
2117  Teuchos::RCP<const map_type> domainMap_;
2118 
2125  Teuchos::RCP<const import_type> importer_;
2126 
2132  Teuchos::RCP<const export_type> exporter_;
2133 
2139  Teuchos::OrdinalTraits<size_t>::invalid();
2140 
2145  Teuchos::OrdinalTraits<global_size_t>::invalid();
2146 
2152  Teuchos::OrdinalTraits<global_size_t>::invalid();
2153 
2154  private:
2155  // Replacement for device view k_rowPtrs_
2156  // Device view rowPtrsUnpacked_dev_ takes place of k_rowPtrs_
2157  // Host view rowPtrsUnpacked_host_ takes place of copies and use of getEntryOnHost
2158  // Wish this could be a WrappedDualView, but deep_copies in DualView
2159  // don't work with const data views (e.g., StaticCrsGraph::row_map)
2160  // k_rowPtrs_ is offsets wrt the ALLOCATED indices array, not necessarily
2161  // the ACTUAL compressed indices array.
2162  // When !OptimizedStorage, k_rowPtrs_ may differ from ACTUAL compressed
2163  // indices array. (Karen is skeptical that !OptimizedStorage works)
2164  // When OptimizedStorage, rowPtrsUnpacked_ = k_rowPtrsPacked_
2165 
2166  row_ptrs_device_view_type rowPtrsUnpacked_dev_;
2167  mutable row_ptrs_host_view_type rowPtrsUnpacked_host_;
2168 
2169  // Row offsets into the actual graph local indices
2170  // Device view rowPtrsUnpacked_dev_ takes place of lclGraph_.row_map
2171 
2172  row_ptrs_device_view_type rowPtrsPacked_dev_;
2173  mutable row_ptrs_host_view_type rowPtrsPacked_host_;
2174 
2176  bool packedUnpackedRowPtrsMatch_ = false;
2177 
2178  protected:
2179  void setRowPtrsUnpacked(const row_ptrs_device_view_type &dview) {
2180  packedUnpackedRowPtrsMatch_ = false;
2181  rowPtrsUnpacked_dev_ = dview;
2182  //Make sure stale host rowptrs are not kept
2183  rowPtrsUnpacked_host_ = row_ptrs_host_view_type();
2184  }
2185 
2187  const row_ptrs_device_view_type& getRowPtrsUnpackedDevice() const
2188  {
2189  return rowPtrsUnpacked_dev_;
2190  }
2191 
2193  const row_ptrs_host_view_type& getRowPtrsUnpackedHost() const
2194  {
2195  if(rowPtrsUnpacked_host_.extent(0) != rowPtrsUnpacked_dev_.extent(0))
2196  {
2197  //NOTE: not just using create_mirror_view here, because
2198  //we do want host/device to be in different memory, even if we're using a SharedSpace.
2199  //This is so that reads will never trigger a host-device transfer.
2200  //The exception is when 'device' views are HostSpace, then don't make another copy.
2201  if constexpr(std::is_same_v<typename Node::memory_space, Kokkos::HostSpace>)
2202  {
2203  rowPtrsUnpacked_host_ = rowPtrsUnpacked_dev_;
2204  }
2205  else
2206  {
2207  //Have to make this temporary because rowptrs are const-valued
2208  typename row_ptrs_host_view_type::non_const_type rowPtrsTemp(
2209  Kokkos::view_alloc(Kokkos::WithoutInitializing, "rowPtrsUnpacked_host_"), rowPtrsUnpacked_dev_.extent(0));
2210  Kokkos::deep_copy(rowPtrsTemp, rowPtrsUnpacked_dev_);
2211  rowPtrsUnpacked_host_= rowPtrsTemp;
2212  }
2213  //Also keep packed/unpacked views in sync, if they are known to have the same contents
2214  if(packedUnpackedRowPtrsMatch_)
2215  {
2216  rowPtrsPacked_host_ = rowPtrsUnpacked_host_;
2217  }
2218  }
2219  return rowPtrsUnpacked_host_;
2220  }
2221 
2222  void setRowPtrsPacked(const row_ptrs_device_view_type &dview) {
2223  packedUnpackedRowPtrsMatch_ = false;
2224  rowPtrsPacked_dev_ = dview;
2225  //Make sure stale host rowptrs are not kept
2226  rowPtrsPacked_host_ = row_ptrs_host_view_type();
2227  }
2228 
2230  const row_ptrs_device_view_type& getRowPtrsPackedDevice() const
2231  {
2232  return rowPtrsPacked_dev_;
2233  }
2234 
2236  const row_ptrs_host_view_type& getRowPtrsPackedHost() const
2237  {
2238  if(rowPtrsPacked_host_.extent(0) != rowPtrsPacked_dev_.extent(0))
2239  {
2240  //NOTE: not just using create_mirror_view here, because
2241  //we do want host/device to be in different memory, even if we're using a SharedSpace.
2242  //This is so that reads will never trigger a host-device transfer.
2243  //The exception is when 'device' views are HostSpace, then don't make another copy.
2244  if constexpr(std::is_same_v<typename Node::memory_space, Kokkos::HostSpace>)
2245  {
2246  rowPtrsPacked_host_ = rowPtrsPacked_dev_;
2247  }
2248  else
2249  {
2250  //Have to make this temporary because rowptrs are const-valued
2251  typename row_ptrs_host_view_type::non_const_type rowPtrsTemp(
2252  Kokkos::view_alloc(Kokkos::WithoutInitializing, "rowPtrsPacked_host_"), rowPtrsPacked_dev_.extent(0));
2253  Kokkos::deep_copy(rowPtrsTemp, rowPtrsPacked_dev_);
2254  rowPtrsPacked_host_= rowPtrsTemp;
2255  }
2256  //Also keep packed/unpacked views in sync, if they are known to have the same contents
2257  if(packedUnpackedRowPtrsMatch_)
2258  {
2259  rowPtrsUnpacked_host_ = rowPtrsPacked_host_;
2260  }
2261  }
2262  return rowPtrsPacked_host_;
2263  }
2264 
2265  // There are common cases where both packed and unpacked views are set to the same array.
2266  // Doing this in a single call can reduce dataspace on host, and reduce runtime by
2267  // removing a deep_copy from device to host.
2268 
2269  void setRowPtrs(const row_ptrs_device_view_type &dview) {
2270  packedUnpackedRowPtrsMatch_ = true;
2271  rowPtrsUnpacked_dev_ = dview;
2272  rowPtrsPacked_dev_ = dview;
2273  //Make sure stale host rowptrs are not kept
2274  rowPtrsUnpacked_host_ = row_ptrs_host_view_type();
2275  rowPtrsPacked_host_ = row_ptrs_host_view_type();
2276  }
2277 
2278  //TODO: Make private -- matrix shouldn't access directly the guts of graph
2279 
2294 
2309 
2310  //TODO: Make private -- matrix shouldn't access directly the guts of graph
2311 
2321 
2322  // TODO: Make private -- matrix shouldn't access directly
2324 
2328  typename local_inds_dualv_type::t_host::const_type
2329  getLocalIndsViewHost (const RowInfo& rowinfo) const;
2330 
2334  typename local_inds_dualv_type::t_dev::const_type
2335  getLocalIndsViewDevice (const RowInfo& rowinfo) const;
2336 
2340  typename global_inds_dualv_type::t_host::const_type
2341  getGlobalIndsViewHost (const RowInfo& rowinfo) const;
2342 
2346  typename global_inds_dualv_type::t_dev::const_type
2347  getGlobalIndsViewDevice (const RowInfo& rowinfo) const;
2348 
2352  typename local_inds_dualv_type::t_host
2353  getLocalIndsViewHostNonConst (const RowInfo& rowinfo);
2354 
2355  // FOR NOW...
2356  // KEEP k_numRowEntries_ (though switch from HostMirror to Host)
2357  // KEEP k_numAllocPerRow_ (though perhaps switch from HostMirror to Host)
2358 
2384  typename Kokkos::View<const size_t*, device_type>::HostMirror
2386 
2397 
2399 
2400 
2422 
2430  typedef typename Kokkos::View<size_t*, Kokkos::LayoutLeft, device_type>::HostMirror num_row_entries_type;
2431 
2432  // typedef Kokkos::View<
2433  // size_t*,
2434  // Kokkos::LayoutLeft,
2435  // Kokkos::Device<
2436  // typename Kokkos::View<
2437  // size_t*,
2438  // Kokkos::LayoutLeft,
2439  // device_type>::HostMirror::execution_space,
2440  // Kokkos::HostSpace> > num_row_entries_type;
2441 
2449 
2455  mutable offset_device_view_type k_offRankOffsets_;
2456 
2458 
2469  Details::STORAGE_1D_UNPACKED;
2470 
2471  bool indicesAreAllocated_ = false;
2472  bool indicesAreLocal_ = false;
2473  bool indicesAreGlobal_ = false;
2474  bool fillComplete_ = false;
2475 
2477  bool indicesAreSorted_ = true;
2480  bool noRedundancies_ = true;
2482  bool haveLocalConstants_ = false;
2484  bool haveGlobalConstants_ = false;
2486  mutable bool haveLocalOffRankOffsets_ = false;
2487 
2488  typedef typename std::map<global_ordinal_type, std::vector<global_ordinal_type> > nonlocals_type;
2489 
2491  nonlocals_type nonlocals_;
2492 
2508 
2509  private:
2511  static bool getDebug();
2512 
2515  bool debug_ = getDebug();
2516 
2518  static bool getVerbose();
2519 
2523  bool verbose_ = getVerbose();
2524 
2525  private:
2527  mutable bool need_sync_host_uvm_access = false;
2528 
2530  void set_need_sync_host_uvm_access() {
2531  need_sync_host_uvm_access = true;
2532  }
2533 
2535  void execute_sync_host_uvm_access() const {
2536  if(need_sync_host_uvm_access) {
2537  Kokkos::fence("CrsGraph::execute_sync_host_uvm_access");
2538  need_sync_host_uvm_access = false;
2539  }
2540  }
2541  }; // class CrsGraph
2542 
2550  template <class LocalOrdinal, class GlobalOrdinal, class Node>
2551  Teuchos::RCP<CrsGraph<LocalOrdinal, GlobalOrdinal, Node> >
2553  const Teuchos::RCP<
2555  size_t maxNumEntriesPerRow = 0,
2556  const Teuchos::RCP<Teuchos::ParameterList>& params =
2557  Teuchos::null)
2558  {
2559  using Teuchos::rcp;
2561  return rcp(new graph_type(map, maxNumEntriesPerRow,
2562  params));
2563  }
2564 
2614  template<class CrsGraphType>
2615  Teuchos::RCP<CrsGraphType>
2616  importAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2617  const Import<typename CrsGraphType::local_ordinal_type,
2618  typename CrsGraphType::global_ordinal_type,
2619  typename CrsGraphType::node_type>& importer,
2620  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2621  typename CrsGraphType::global_ordinal_type,
2622  typename CrsGraphType::node_type> >& domainMap = Teuchos::null,
2623  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2624  typename CrsGraphType::global_ordinal_type,
2625  typename CrsGraphType::node_type> >& rangeMap = Teuchos::null,
2626  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null)
2627  {
2628  Teuchos::RCP<CrsGraphType> destGraph;
2629  sourceGraph->importAndFillComplete (destGraph,importer,domainMap, rangeMap, params);
2630  return destGraph;
2631  }
2632 
2683  template<class CrsGraphType>
2684  Teuchos::RCP<CrsGraphType>
2685  importAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2686  const Import<typename CrsGraphType::local_ordinal_type,
2687  typename CrsGraphType::global_ordinal_type,
2688  typename CrsGraphType::node_type>& rowImporter,
2689  const Import<typename CrsGraphType::local_ordinal_type,
2690  typename CrsGraphType::global_ordinal_type,
2691  typename CrsGraphType::node_type>& domainImporter,
2692  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2693  typename CrsGraphType::global_ordinal_type,
2694  typename CrsGraphType::node_type> >& domainMap,
2695  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2696  typename CrsGraphType::global_ordinal_type,
2697  typename CrsGraphType::node_type> >& rangeMap,
2698  const Teuchos::RCP<Teuchos::ParameterList>& params)
2699  {
2700  Teuchos::RCP<CrsGraphType> destGraph;
2701  sourceGraph->importAndFillComplete (destGraph,rowImporter,domainImporter, domainMap, rangeMap, params);
2702  return destGraph;
2703  }
2704 
2738  template<class CrsGraphType>
2739  Teuchos::RCP<CrsGraphType>
2740  exportAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2741  const Export<typename CrsGraphType::local_ordinal_type,
2742  typename CrsGraphType::global_ordinal_type,
2743  typename CrsGraphType::node_type>& exporter,
2744  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2745  typename CrsGraphType::global_ordinal_type,
2746  typename CrsGraphType::node_type> >& domainMap = Teuchos::null,
2747  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2748  typename CrsGraphType::global_ordinal_type,
2749  typename CrsGraphType::node_type> >& rangeMap = Teuchos::null,
2750  const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null)
2751  {
2752  Teuchos::RCP<CrsGraphType> destGraph;
2753  sourceGraph->exportAndFillComplete (destGraph,exporter,domainMap, rangeMap, params);
2754  return destGraph;
2755  }
2756 
2790  template<class CrsGraphType>
2791  Teuchos::RCP<CrsGraphType>
2792  exportAndFillCompleteCrsGraph (const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2793  const Export<typename CrsGraphType::local_ordinal_type,
2794  typename CrsGraphType::global_ordinal_type,
2795  typename CrsGraphType::node_type>& rowExporter,
2796  const Export<typename CrsGraphType::local_ordinal_type,
2797  typename CrsGraphType::global_ordinal_type,
2798  typename CrsGraphType::node_type>& domainExporter,
2799  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2800  typename CrsGraphType::global_ordinal_type,
2801  typename CrsGraphType::node_type> >& domainMap,
2802  const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2803  typename CrsGraphType::global_ordinal_type,
2804  typename CrsGraphType::node_type> >& rangeMap,
2805  const Teuchos::RCP<Teuchos::ParameterList>& params)
2806  {
2807  Teuchos::RCP<CrsGraphType> destGraph;
2808  sourceGraph->exportAndFillComplete (destGraph,rowExporter,domainExporter,domainMap, rangeMap, params);
2809  return destGraph;
2810  }
2811 
2812 
2813 } // namespace Tpetra
2814 
2815 #endif // TPETRA_CRSGRAPH_DECL_HPP
Communication plan for data redistribution from a uniquely-owned to a (possibly) multiply-owned distr...
void setDomainRangeMaps(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap)
void setAllIndices(const typename local_graph_device_type::row_map_type &rowPointers, const typename local_graph_device_type::entries_type::non_const_type &columnIndices)
Set the graph&#39;s data directly, using 1-D storage.
Teuchos::RCP< const map_type > getRowMap() const override
Returns the Map that describes the row distribution in this graph.
offset_device_view_type k_offRankOffsets_
The offsets for off-rank entries.
size_t nodeMaxNumRowEntries_
Local maximum of the number of entries in each row.
bool indicesAreSorted_
Whether the graph&#39;s indices are sorted in each row, on this process.
A distributed graph accessed by rows (adjacency lists) and stored sparsely.
::Tpetra::Export< LocalOrdinal, GlobalOrdinal, Node > export_type
The Export specialization used by this class.
Sparse matrix that presents a row-oriented interface that lets users read or modify entries...
Teuchos::RCP< const map_type > rangeMap_
The Map describing the range of the (matrix corresponding to the) graph.
Teuchos::RCP< const map_type > getColMap() const override
Returns the Map that describes the column distribution in this graph.
local_inds_host_view_type getLocalIndicesHost() const
Get a host view of the packed column indicies.
GO global_ordinal_type
The type of the graph&#39;s global indices.
local_inds_dualv_type::t_host::const_type getLocalIndsViewHost(const RowInfo &rowinfo) const
Get a const, locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myRo...
An abstract interface for graphs accessed by rows.
Kokkos::View< const size_t *, device_type >::HostMirror k_numAllocPerRow_
The maximum number of entries to allow in each locally owned row, per row.
void getLocalOffRankOffsets(offset_device_view_type &offsets) const
Get offsets of the off-rank entries in the graph.
void insertGlobalIndicesFiltered(const local_ordinal_type lclRow, const global_ordinal_type gblColInds[], const local_ordinal_type numGblColInds)
Like insertGlobalIndices(), but with column Map filtering.
local_inds_dualv_type::t_host getLocalIndsViewHostNonConst(const RowInfo &rowinfo)
Get a ReadWrite locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(m...
bool sortGhostsAssociatedWithEachProcessor_
Whether to require makeColMap() (and therefore fillComplete()) to order column Map GIDs associated wi...
virtual void copyAndPermute(const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM)
Perform copies and permutations that are local to the calling (MPI) process.
size_t insertGlobalIndicesImpl(const local_ordinal_type lclRow, const global_ordinal_type inputGblColInds[], const size_t numInputInds)
Insert global indices, using an input local row index.
void resumeFill(const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Resume fill operations.
bool haveGlobalConstants_
Whether all processes have computed global constants.
size_t getLocalNumRows() const override
Returns the number of graph rows owned on the calling node.
void expertStaticFillComplete(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< const import_type > &importer=Teuchos::null, const Teuchos::RCP< const export_type > &exporter=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Perform a fillComplete on a graph that already has data, via setAllIndices().
Teuchos::RCP< const import_type > getImporter() const override
Returns the importer associated with this graph.
void getLocalDiagOffsets(const Kokkos::View< size_t *, device_type, Kokkos::MemoryUnmanaged > &offsets) const
Get offsets of the diagonal entries in the graph.
void insertGlobalIndices(const global_ordinal_type globalRow, const Teuchos::ArrayView< const global_ordinal_type > &indices)
Insert global indices into the graph.
size_t getNumEntriesInLocalRow(local_ordinal_type localRow) const override
Get the number of entries in the given row (local index).
size_t getLocalAllocationSize() const
The local number of indices allocated for the graph, over all rows on the calling (MPI) process...
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const override
Default parameter list suitable for validation.
void computeLocalConstants()
Compute local constants, if they have not yet been computed.
typename row_graph_type::local_inds_device_view_type local_inds_device_view_type
The Kokkos::View type for views of local ordinals on device and host.
bool isIdenticalTo(const CrsGraph< LocalOrdinal, GlobalOrdinal, Node > &graph) const
Create a cloned CrsGraph for a different Node type.
bool isMerged() const
Whether duplicate column indices in each row have been merged.
Kokkos::StaticCrsGraph< local_ordinal_type, Kokkos::LayoutLeft, device_type, void, size_t > local_graph_device_type
The type of the part of the sparse graph on each MPI process.
virtual bool checkSizes(const SrcDistObject &source) override
Compare the source and target (this) objects for compatibility.
Forward declaration of Tpetra::BlockCrsMatrix.
Teuchos::RCP< const map_type > getDomainMap() const override
Returns the Map associated with the domain of this graph.
size_t getGlobalMaxNumRowEntries() const override
Maximum number of entries in any row of the graph, over all processes in the graph&#39;s communicator...
virtual ~CrsGraph()=default
Destructor (virtual for memory safety of derived classes).
bool noRedundancies_
Whether the graph&#39;s indices are non-redundant (merged) in each row, on this process.
global_inds_dualv_type::t_dev::const_type getGlobalIndsViewDevice(const RowInfo &rowinfo) const
Get a const, globally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myR...
void replaceRangeMap(const Teuchos::RCP< const map_type > &newRangeMap)
Replace the current Range Map with the given objects.
row_ptrs_device_view_type getLocalRowPtrsDevice() const
Get a device view of the packed row offsets.
virtual void unpackAndCombine(const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode)
Perform any unpacking and combining after communication.
global_inds_dualv_type::t_host::const_type getGlobalIndsViewHost(const RowInfo &rowinfo) const
Get a const, globally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myR...
const row_ptrs_host_view_type & getRowPtrsPackedHost() const
Get the packed row pointers on host. Lazily make a copy from device.
size_t getNumAllocatedEntriesInGlobalRow(global_ordinal_type globalRow) const
Current number of allocated entries in the given row on the calling (MPI) process, using a global row index.
Allocation information for a locally owned row in a CrsGraph or CrsMatrix.
local_inds_wdv_type lclIndsUnpacked_wdv
Local ordinals of column indices for all rows Valid when isLocallyIndexed is true If OptimizedStorage...
void replaceRangeMapAndExporter(const Teuchos::RCP< const map_type > &newRangeMap, const Teuchos::RCP< const export_type > &newExporter)
Replace the current Range Map and Export with the given parameters.
bool hasColMap() const override
Whether the graph has a column Map.
bool isGloballyIndexed() const override
Whether the graph&#39;s column indices are stored as global indices.
void exportAndFillComplete(Teuchos::RCP< CrsGraph< local_ordinal_type, global_ordinal_type, Node > > &destGraph, const export_type &exporter, const Teuchos::RCP< const map_type > &domainMap=Teuchos::null, const Teuchos::RCP< const map_type > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null) const
Export from this to the given destination graph, and make the result fill complete.
virtual void unpackAndCombine(const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode) override
bool haveGlobalConstants() const
Returns true if globalConstants have been computed; false otherwise.
bool isStorageOptimized() const
Returns true if storage has been optimized.
bool haveLocalConstants_
Whether this process has computed local constants.
size_t findGlobalIndices(const RowInfo &rowInfo, const Teuchos::ArrayView< const global_ordinal_type > &indices, std::function< void(const size_t, const size_t, const size_t)> fun) const
Finds indices in the given row.
std::string description() const override
Return a one-line human-readable description of this object.
void makeColMap(Teuchos::Array< int > &remotePIDs)
Make and set the graph&#39;s column Map.
Teuchos::RCP< const export_type > getExporter() const override
Returns the exporter associated with this graph.
std::pair< size_t, std::string > makeIndicesLocal(const bool verbose=false)
Convert column indices from global to local.
size_t global_size_t
Global size_t object.
virtual void removeEmptyProcessesInPlace(const Teuchos::RCP< const map_type > &newMap) override
Remove processes owning zero rows from the Maps and their communicator.
node_type node_type
This class&#39; Kokkos Node type.
void reindexColumns(const Teuchos::RCP< const map_type > &newColMap, const Teuchos::RCP< const import_type > &newImport=Teuchos::null, const bool sortIndicesInEachRow=true)
Reindex the column indices in place, and replace the column Map. Optionally, replace the Import objec...
void deep_copy(MultiVector< DS, DL, DG, DN > &dst, const MultiVector< SS, SL, SG, SN > &src)
Copy the contents of the MultiVector src into dst.
Teuchos::RCP< CrsGraphType > importAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Import< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &importer, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember CrsGraph constructor that fuses Import and fillComplete().
void makeImportExport(Teuchos::Array< int > &remotePIDs, const bool useRemotePIDs)
Make the Import and Export objects, if needed.
size_t sortAndMergeRowIndices(const RowInfo &rowInfo, const bool sorted, const bool merged)
Sort and merge duplicate column indices in the given row.
void insertLocalIndices(const local_ordinal_type localRow, const Teuchos::ArrayView< const local_ordinal_type > &indices)
Insert local indices into the graph.
bool isSorted() const
Whether graph indices in all rows are known to be sorted.
void getLocalRowCopy(local_ordinal_type gblRow, nonconst_local_inds_host_view_type &gblColInds, size_t &numColInds) const override
Get a copy of the given row, using local indices.
Teuchos::RCP< const map_type > rowMap_
The Map describing the distribution of rows of the graph.
Teuchos::RCP< const import_type > importer_
The Import from the domain Map to the column Map.
num_row_entries_type k_numRowEntries_
The number of local entries in each locally owned row.
local_inds_device_view_type getLocalIndicesDevice() const
Get a device view of the packed column indicies.
Teuchos::RCP< const map_type > domainMap_
The Map describing the domain of the (matrix corresponding to the) graph.
global_size_t getGlobalNumRows() const override
Returns the number of global rows in the graph.
Kokkos::View< size_t *, Kokkos::LayoutLeft, device_type >::HostMirror num_row_entries_type
Row offsets for &quot;1-D&quot; storage.
void setLocallyModified()
Report that we made a local modification to its structure.
Communication plan for data redistribution from a (possibly) multiply-owned to a uniquely-owned distr...
virtual void packAndPrepare(const SrcDistObject &source, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< packet_type *, buffer_device_type > &exports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, size_t &constantNumPackets)
Pack data and metadata for communication (sends).
void checkInternalState() const
Throw an exception if the internal state is not consistent.
Keep track of how much more space a CrsGraph or CrsMatrix needs, when the graph or matrix is the targ...
CombineMode
Rule for combining data in an Import or Export.
Teuchos::RCP< const export_type > exporter_
The Export from the row Map to the range Map.
void insertGlobalIndicesIntoNonownedRows(const global_ordinal_type gblRow, const global_ordinal_type gblColInds[], const local_ordinal_type numGblColInds)
Implementation of insertGlobalIndices for nonowned rows.
bool isFillComplete() const override
Whether fillComplete() has been called and the graph is in compute mode.
size_t getNumAllocatedEntriesInLocalRow(local_ordinal_type localRow) const
Current number of allocated entries in the given row on the calling (MPI) process, using a local row index.
void swap(CrsGraph< local_ordinal_type, global_ordinal_type, Node > &graph)
Swaps the data from *this with the data and maps from graph.
void globalAssemble()
Communicate nonlocal contributions to other processes.
typename device_type::execution_space execution_space
This class&#39; Kokkos execution space.
RowInfo getRowInfoFromGlobalRowIndex(const global_ordinal_type gblRow) const
Get information about the locally owned row with global index gblRow.
Forward declaration of Tpetra::CrsMatrix.
size_t getLocalNumCols() const override
Returns the number of columns connected to the locally owned rows of this graph.
size_t getLocalNumEntries() const override
The local number of entries in the graph.
Abstract base class for objects that can be the source of an Import or Export operation.
void removeLocalIndices(local_ordinal_type localRow)
Remove all graph indices from the specified local row.
LO local_ordinal_type
The type of the graph&#39;s local indices.
global_size_t globalNumEntries_
Global number of entries in the graph.
global_inds_wdv_type gblInds_wdv
Global ordinals of column indices for all rows.
local_inds_dualv_type::t_dev::const_type getLocalIndsViewDevice(const RowInfo &rowinfo) const
Get a const, locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myRo...
Teuchos::RCP< const map_type > getRangeMap() const override
Returns the Map associated with the domain of this graph.
virtual void pack(const Teuchos::ArrayView< const local_ordinal_type > &exportLIDs, Teuchos::Array< global_ordinal_type > &exports, const Teuchos::ArrayView< size_t > &numPacketsPerLID, size_t &constantNumPackets) const override
row_ptrs_host_view_type getLocalRowPtrsHost() const
Get a host view of the packed row offsets.
const row_ptrs_host_view_type & getRowPtrsUnpackedHost() const
Get the unpacked row pointers on host. Lazily make a copy from device.
void replaceColMap(const Teuchos::RCP< const map_type > &newColMap)
Replace the graph&#39;s current column Map with the given Map.
global_size_t getGlobalNumCols() const override
Returns the number of global columns in the graph.
size_t getLocalMaxNumRowEntries() const override
Maximum number of entries in any row of the graph, on this process.
RowInfo getRowInfo(const local_ordinal_type myRow) const
Get information about the locally owned row with local index myRow.
void replaceDomainMapAndImporter(const Teuchos::RCP< const map_type > &newDomainMap, const Teuchos::RCP< const import_type > &newImporter)
Replace the current domain Map and Import with the given parameters.
typename row_graph_type::global_inds_device_view_type global_inds_device_view_type
The Kokkos::View type for views of global ordinals on device and host.
bool supportsRowViews() const override
Whether this class implements getLocalRowView() and getGlobalRowView() (it does). ...
typename dist_object_type::buffer_device_type buffer_device_type
Teuchos::RCP< CrsGraph< LocalOrdinal, GlobalOrdinal, Node > > createCrsGraph(const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node >> &map, size_t maxNumEntriesPerRow=0, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember function to create an empty CrsGraph given a row Map and the max number of entries allowed ...
local_inds_wdv_type lclIndsPacked_wdv
Local ordinals of column indices for all rows Valid when isLocallyIndexed is true Built during fillCo...
A distributed graph accessed by rows (adjacency lists) and stored sparsely.
Details::EStorageStatus storageStatus_
Status of the graph&#39;s storage, when not in a fill-complete state.
const row_ptrs_device_view_type & getRowPtrsPackedDevice() const
Get the packed row pointers on device.
const row_ptrs_device_view_type & getRowPtrsUnpackedDevice() const
Get the unpacked row pointers on device.
CrsGraph & operator=(const CrsGraph< local_ordinal_type, global_ordinal_type, node_type > &)=default
Assignment operator (default).
void setParameterList(const Teuchos::RCP< Teuchos::ParameterList > &params) override
Set the given list of parameters (must be nonnull).
size_t getNumEntriesInGlobalRow(global_ordinal_type globalRow) const override
Returns the current number of entries on this node in the specified global row.
void fillComplete(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Tell the graph that you are done changing its structure.
void getLocalRowView(const LocalOrdinal lclRow, local_inds_host_view_type &lclColInds) const override
Get a const view of the given local row&#39;s local column indices.
typename node_type::device_type device_type
This class&#39; Kokkos device type.
bool isLocallyIndexed() const override
Whether the graph&#39;s column indices are stored as local indices.
::Tpetra::Import< LocalOrdinal, GlobalOrdinal, Node > import_type
The Import specialization used by this class.
Stand-alone utility functions and macros.
bool isFillActive() const
Whether resumeFill() has been called and the graph is in edit mode.
virtual void copyAndPermute(const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM) override
Teuchos::RCP< const Teuchos::Comm< int > > getComm() const override
Returns the communicator.
void importAndFillComplete(Teuchos::RCP< CrsGraph< local_ordinal_type, global_ordinal_type, Node > > &destGraph, const import_type &importer, const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null) const
Import from this to the given destination graph, and make the result fill complete.
global_size_t globalMaxNumRowEntries_
Global maximum of the number of entries in each row.
static const bool useAtomicUpdatesByDefault
Whether transformLocalValues should use atomic updates by default.
size_t insertIndices(RowInfo &rowInfo, const SLocalGlobalViews &newInds, const ELocalGlobal lg, const ELocalGlobal I)
Insert indices into the given row.
global_size_t getGlobalNumEntries() const override
Returns the global number of entries in the graph.
Kokkos::Device< typename device_type::execution_space, buffer_memory_space > buffer_device_type
size_t numAllocForAllRows_
The maximum number of entries to allow in each locally owned row.
local_graph_device_type getLocalGraphDevice() const
Get the local graph.
Base class for distributed Tpetra objects that support data redistribution.
void getGlobalRowView(const global_ordinal_type gblRow, global_inds_host_view_type &gblColInds) const override
Get a const view of the given global row&#39;s global column indices.
global_ordinal_type packet_type
Type of each entry of the DistObject communication buffer.
Teuchos::RCP< const map_type > colMap_
The Map describing the distribution of columns of the graph.
global_ordinal_type getIndexBase() const override
Returns the index base for global indices for this graph.
typename local_graph_device_type::HostMirror local_graph_host_type
The type of the part of the sparse graph on each MPI process.
void replaceDomainMap(const Teuchos::RCP< const map_type > &newDomainMap)
Replace the current domain Map with the given objects.
EStorageStatus
Status of the graph&#39;s or matrix&#39;s storage, when not in a fill-complete state.
Forward declaration of Tpetra::CrsGraph.
Teuchos::RCP< CrsGraphType > exportAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Export< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &exporter, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember CrsGraph constructor that fuses Export and fillComplete().
nonlocals_type nonlocals_
Nonlocal data given to insertGlobalIndices.
void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const override
Print this object to the given output stream with the given verbosity level.
void computeGlobalConstants()
Compute global constants, if they have not yet been computed.
void getGlobalRowCopy(global_ordinal_type gblRow, nonconst_global_inds_host_view_type &gblColInds, size_t &numColInds) const override
Get a copy of the given row, using global indices.