MueLu_Utilities.cpp

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//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
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// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
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// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
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// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
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// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
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// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
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// @HEADER
#include "MueLu_Utilities_def.hpp"

#include <string>
#include <locale>

#ifdef HAVE_MUELU_EPETRAEXT
#include "EpetraExt_Transpose_RowMatrix.h"
#endif

#ifdef HAVE_MPI
#include <mpi.h>
#include <netdb.h>
#include <arpa/inet.h>
#endif



namespace MueLu {

  long ExtractNonSerializableData(const Teuchos::ParameterList& inList, Teuchos::ParameterList& serialList, Teuchos::ParameterList& nonSerialList) {
    using Teuchos::ParameterList;

    ParameterList dummy;
    long maxLevel = 0;

    for (ParameterList::ConstIterator it = inList.begin(); it != inList.end(); it++) {
      const std::string& levelName = it->first;

      // Check for mach of the form "level X" where X is a positive integer
      if (inList.isSublist(levelName) && ((levelName.find("level ") == 0 && levelName.size() > 6) || levelName.find("user data") == 0)) {
        int levelID = strtol(levelName.substr(6).c_str(), 0, 0);
        bool userFlag = true;
        if(levelName.find("user data") == std::string::npos) { // if "user data" is not found in levelName, switch userFlag and set levelID
          userFlag = false;
          levelID = strtol(levelName.substr(6).c_str(), 0, 0);
          if (maxLevel < levelID)
            maxLevel = levelID;
        }

        // Split the sublist
        const ParameterList& levelList = inList.sublist(levelName);
        for (ParameterList::ConstIterator it2 = levelList.begin(); it2 != levelList.end(); it2++) {
          const std::string& name = it2->first;
          if (name == "A" || name == "P" || name == "R"  || name== "M" || name == "Mdiag" || name == "K" || name == "Nullspace" || name == "Coordinates"
              || name == "Node Comm" || name == "DualNodeID2PrimalNodeID"
#ifdef HAVE_MUELU_INTREPID2 // For the IntrepidPCoarsenFactory
              || name == "pcoarsen: element to node map"
#endif
              || name == "output stream"
              )
          {
            nonSerialList.sublist(levelName).setEntry(name, it2->second);
          }
#ifdef HAVE_MUELU_MATLAB
          else if(!userFlag && IsParamMuemexVariable(name))
          {
            nonSerialList.sublist(levelName).setEntry(name, it2->second);
          }
#endif
          else if( userFlag && IsParamValidVariable(name)) {
            nonSerialList.sublist(levelName).setEntry(name, it2->second);
          } else {
            serialList.sublist(levelName).setEntry(name, it2->second);
          }
        }

      } else {
        serialList.setEntry(it->first, it->second);
      }
    }

    return maxLevel;
  }

  void TokenizeStringAndStripWhiteSpace(const std::string& stream, std::vector<std::string>& tokenList, const char* delimChars)
  {
    //note: default delimiter string is ","
    // Take a comma-separated list and tokenize it, stripping out leading & trailing whitespace.  Then add to tokenList
    char* buf = (char*) malloc(stream.size() + 1);
    strcpy(buf, stream.c_str());
    char* token = strtok(buf, delimChars);
    if(token == NULL)
    {
      free(buf);
      return;
    }
    while(token)
    {
      //token points to start of string to add to tokenList
      //remove front whitespace...
      char* tokStart = token;
      char* tokEnd = token + strlen(token) - 1;
      while(*tokStart == ' ' && tokStart < tokEnd)
        tokStart++;
      while(*tokEnd == ' ' && tokStart < tokEnd)
        tokEnd--;
      tokEnd++;
      if(tokStart < tokEnd)
      {
        std::string finishedToken(tokStart, tokEnd - tokStart); //use the constructor that takes a certain # of chars
        tokenList.push_back(finishedToken);
      }
      token = strtok(NULL, delimChars);
    }
    free(buf);
  }

  bool IsParamMuemexVariable(const std::string& name)
  {
    //see if paramName is exactly two "words" - like "OrdinalVector myNullspace" or something
    char* str = (char*) malloc(name.length() + 1);
    strcpy(str, name.c_str());
    //Strip leading and trailing whitespace
    char* firstWord = strtok(str, " ");
    if(!firstWord) {
      free(str);
      return false;
    }
    char* secondWord = strtok(NULL, " ");
    if(!secondWord) {
      free(str);
      return false;
    }
    char* thirdWord = strtok(NULL, " ");
    if(thirdWord) {
      free(str);
      return false;
    }
    //convert first word to all lowercase for case insensitive compare
    char* tolowerIt = firstWord;
    while(*tolowerIt)
    {
      *tolowerIt = (char) tolower(*tolowerIt);
      tolowerIt++;
    }
    //See if the first word is one of the custom variable names
    if(strstr(firstWord, "matrix") ||
       strstr(firstWord, "multivector") ||
       strstr(firstWord, "map") ||
       strstr(firstWord, "ordinalvector") ||
       strstr(firstWord, "int") ||
       strstr(firstWord, "scalar") ||
       strstr(firstWord, "double") ||
       strstr(firstWord, "complex") ||
       strstr(firstWord, "string"))
      //Add name to list of keys to remove
    {
      free(str);
      return true;
    }
    else
    {
      free(str);
      return false;
    }
  }

bool IsParamValidVariable(const std::string& name)
  {
    //see if paramName is exactly two "words" - like "OrdinalVector myNullspace" or something
    char* str = (char*) malloc(name.length() + 1);
    strcpy(str, name.c_str());
    //Strip leading and trailing whitespace
    char* firstWord = strtok(str, " ");
    if(!firstWord) {
      free(str);
      return false;
    }
    char* secondWord = strtok(NULL, " ");
    if(!secondWord) {
      free(str);
      return false;
    }
    char* thirdWord = strtok(NULL, " ");
    if(thirdWord) {
      free(str);
      return false;
    }
    //convert first word to all lowercase for case insensitive compare
    char* tolowerIt = firstWord;
    while(*tolowerIt)
    {
      *tolowerIt = (char) tolower(*tolowerIt);
      tolowerIt++;
    }
    //See if the first word is one of the custom variable names
    if(strstr(firstWord, "matrix") ||
       strstr(firstWord, "multivector") ||
       strstr(firstWord, "map") ||
       strstr(firstWord, "ordinalvector") ||
       strstr(firstWord, "int") ||
       strstr(firstWord, "scalar") ||
       strstr(firstWord, "double") ||
       strstr(firstWord, "complex") ||
       strstr(firstWord, "string") ||
       strstr(firstWord, "array<go>") ||
       strstr(firstWord, "array<lo>") ||
       strstr(firstWord, "arrayrcp<lo>") ||
       strstr(firstWord, "arrayrcp<go>"))
      //Add name to list of keys to remove
    {
      free(str);
      return true;
    }
    else
    {
      free(str);
      return false;
    }
  }


   // Generates a communicator whose only members are other ranks of the baseComm on my node
  Teuchos::RCP<const Teuchos::Comm<int> > GenerateNodeComm(RCP<const Teuchos::Comm<int> > & baseComm, int &NodeId, const int reductionFactor) {
#ifdef HAVE_MPI
       int numRanks = baseComm->getSize();
       if(numRanks == 1) {NodeId = baseComm->getRank(); return baseComm;}

       // Get an integer from the hostname
       char hostname[MPI_MAX_PROCESSOR_NAME];
       int len;
       MPI_Get_processor_name(hostname,&len);
       struct hostent * host = gethostbyname(hostname);
       int myaddr = (int) htonl(inet_network(inet_ntoa(*(struct in_addr *)host->h_addr)));

       // All-to-all exchange of address integers
       std::vector<int> addressList(numRanks);
       Teuchos::gatherAll(*baseComm,1,&myaddr,numRanks,&addressList[0]);

       // Sort!
       std::sort(addressList.begin(),addressList.end());

       // Find which node I'm on (and stop when I've done that)
       int numNodes = 0;
       for(int i=0, prev=addressList[0]; i<numRanks && prev != myaddr; i++) {
         if(prev != addressList[i]) {
           prev = addressList[i];
           numNodes++;
         }
       }
       NodeId = numNodes;

       // Generate nodal communicator
       Teuchos::RCP<const Teuchos::Comm<int> > newComm =  baseComm->split(NodeId,baseComm->getRank());

       // If we want to divide nodes up (for really beefy nodes), we do so here
       if(reductionFactor != 1) {
         // Find # cores per node
         int lastI = 0;
         int coresPerNode = 0;
         for(int i=0, prev=addressList[0]; i<numRanks; i++) {
           if(prev != addressList[i]) {
             prev = addressList[i];
             coresPerNode = std::max(i - lastI, coresPerNode);
             lastI = i;
           }
         }
         coresPerNode = std::max(numRanks - lastI, coresPerNode);

         // Can we chop that up?
         if(coresPerNode % reductionFactor != 0)
           throw std::runtime_error("Reduction factor does not evently divide # cores per node");
         int reducedCPN = coresPerNode / reductionFactor;
         int nodeDivision = newComm->getRank() / reducedCPN;

         NodeId = numNodes * reductionFactor + nodeDivision;
         newComm =  baseComm->split(NodeId,baseComm->getRank());
       }

       return newComm;
#else
       NodeId = baseComm->getRank();
       return baseComm;
#endif
    }


} // namespace MueLu