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BelosThyraAdapter.hpp
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41 
52 #ifndef BELOS_THYRA_ADAPTER_HPP
53 #define BELOS_THYRA_ADAPTER_HPP
54 
55 #include "BelosConfigDefs.hpp"
56 #include "BelosMultiVecTraits.hpp"
57 #include "BelosOperatorTraits.hpp"
58 
59 #include <Thyra_DetachedMultiVectorView.hpp>
60 #include <Thyra_MultiVectorBase.hpp>
61 #include <Thyra_MultiVectorStdOps.hpp>
62 #ifdef HAVE_BELOS_TSQR
63 # include <Thyra_TsqrAdaptor.hpp>
64 #endif // HAVE_BELOS_TSQR
65 
66 #include <Teuchos_TimeMonitor.hpp>
67 
68 namespace Belos {
69 
71  //
72  // Implementation of the Belos::MultiVecTraits for Thyra::MultiVectorBase
73  //
75 
82  template<class ScalarType>
83  class MultiVecTraits< ScalarType, Thyra::MultiVectorBase<ScalarType> >
84  {
85  private:
88  typedef typename ST::magnitudeType magType;
89 
90  public:
91 
94 
99  static Teuchos::RCP<TMVB> Clone( const TMVB& mv, const int numvecs )
100  {
101  Teuchos::RCP<TMVB> c = Thyra::createMembers( mv.range(), numvecs );
102  return c;
103  }
104 
109  static Teuchos::RCP<TMVB> CloneCopy( const TMVB& mv )
110  {
111  int numvecs = mv.domain()->dim();
112  // create the new multivector
113  Teuchos::RCP< TMVB > cc = Thyra::createMembers( mv.range(), numvecs );
114  // copy the data from the source multivector to the new multivector
115  Thyra::assign(cc.ptr(), mv);
116  return cc;
117  }
118 
124  static Teuchos::RCP<TMVB> CloneCopy( const TMVB& mv, const std::vector<int>& index )
125  {
126  int numvecs = index.size();
127  // create the new multivector
128  Teuchos::RCP<TMVB> cc = Thyra::createMembers( mv.range(), numvecs );
129  // create a view to the relevant part of the source multivector
130  Teuchos::RCP<const TMVB> view = mv.subView(index);
131  // copy the data from the relevant view to the new multivector
132  Thyra::assign(cc.ptr(), *view);
133  return cc;
134  }
135 
136  static Teuchos::RCP<TMVB>
137  CloneCopy (const TMVB& mv, const Teuchos::Range1D& index)
138  {
139  const int numVecs = index.size();
140  // Create the new multivector
141  Teuchos::RCP<TMVB> cc = Thyra::createMembers (mv.range(), numVecs);
142  // Create a view to the relevant part of the source multivector
143  Teuchos::RCP<const TMVB> view = mv.subView (index);
144  // Copy the data from the view to the new multivector.
145  Thyra::assign (cc.ptr(), *view);
146  return cc;
147  }
148 
154  static Teuchos::RCP<TMVB> CloneViewNonConst( TMVB& mv, const std::vector<int>& index )
155  {
156  int numvecs = index.size();
157 
158  // We do not assume that the indices are sorted, nor do we check that
159  // index.size() > 0. This code is fail-safe, in the sense that a zero
160  // length index std::vector will pass the error on the Thyra.
161 
162  // Thyra has two ways to create an indexed View:
163  // * contiguous (via a range of columns)
164  // * indexed (via a std::vector of column indices)
165  // The former is significantly more efficient than the latter, in terms of
166  // computations performed with/against the created view.
167  // We will therefore check to see if the given indices are contiguous, and
168  // if so, we will use the contiguous view creation method.
169 
170  int lb = index[0];
171  bool contig = true;
172  for (int i=0; i<numvecs; i++) {
173  if (lb+i != index[i]) contig = false;
174  }
175 
177  if (contig) {
178  const Thyra::Range1D rng(lb,lb+numvecs-1);
179  // create a contiguous view to the relevant part of the source multivector
180  cc = mv.subView(rng);
181  }
182  else {
183  // create an indexed view to the relevant part of the source multivector
184  cc = mv.subView(index);
185  }
186  return cc;
187  }
188 
189  static Teuchos::RCP<TMVB>
190  CloneViewNonConst (TMVB& mv, const Teuchos::Range1D& index)
191  {
192  // We let Thyra be responsible for checking that the index range
193  // is nonempty.
194  //
195  // Create and return a contiguous view to the relevant part of
196  // the source multivector.
197  return mv.subView (index);
198  }
199 
200 
206  static Teuchos::RCP<const TMVB> CloneView( const TMVB& mv, const std::vector<int>& index )
207  {
208  int numvecs = index.size();
209 
210  // We do not assume that the indices are sorted, nor do we check that
211  // index.size() > 0. This code is fail-safe, in the sense that a zero
212  // length index std::vector will pass the error on the Thyra.
213 
214  // Thyra has two ways to create an indexed View:
215  // * contiguous (via a range of columns)
216  // * indexed (via a std::vector of column indices)
217  // The former is significantly more efficient than the latter, in terms of
218  // computations performed with/against the created view.
219  // We will therefore check to see if the given indices are contiguous, and
220  // if so, we will use the contiguous view creation method.
221 
222  int lb = index[0];
223  bool contig = true;
224  for (int i=0; i<numvecs; i++) {
225  if (lb+i != index[i]) contig = false;
226  }
227 
229  if (contig) {
230  const Thyra::Range1D rng(lb,lb+numvecs-1);
231  // create a contiguous view to the relevant part of the source multivector
232  cc = mv.subView(rng);
233  }
234  else {
235  // create an indexed view to the relevant part of the source multivector
236  cc = mv.subView(index);
237  }
238  return cc;
239  }
240 
242  CloneView (const TMVB& mv, const Teuchos::Range1D& index)
243  {
244  // We let Thyra be responsible for checking that the index range
245  // is nonempty.
246  //
247  // Create and return a contiguous view to the relevant part of
248  // the source multivector.
249  return mv.subView (index);
250  }
251 
253 
256 
258  static ptrdiff_t GetGlobalLength( const TMVB& mv ) {
259  return Teuchos::as<ptrdiff_t>(mv.range()->dim());
260  }
261 
263  static int GetNumberVecs( const TMVB& mv )
264  { return mv.domain()->dim(); }
265 
267 
270 
273  static void MvTimesMatAddMv( const ScalarType alpha, const TMVB& A,
275  const ScalarType beta, TMVB& mv )
276  {
277  using Teuchos::arrayView; using Teuchos::arcpFromArrayView;
278 
279  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvTimesMatAddMv")));
280 
281  const int m = B.numRows();
282  const int n = B.numCols();
283  auto vs = A.domain();
284  // Create a view of the B object!
286  B_thyra = vs->createCachedMembersView(
288  0, m, 0, n,
289  arcpFromArrayView(arrayView(&B(0,0), B.stride()*B.numCols())), B.stride()
290  )
291  );
292  // perform the operation via A: mv <- alpha*A*B_thyra + beta*mv
293  Thyra::apply<ScalarType>(A, Thyra::NOTRANS, *B_thyra, Teuchos::outArg(mv), alpha, beta);
294  }
295 
298  static void MvAddMv( const ScalarType alpha, const TMVB& A,
299  const ScalarType beta, const TMVB& B, TMVB& mv )
300  {
301  using Teuchos::tuple; using Teuchos::ptrInArg; using Teuchos::inoutArg;
302 
303  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvAddMv")));
304 
305  Thyra::linear_combination<ScalarType>(
306  tuple(alpha, beta)(), tuple(ptrInArg(A), ptrInArg(B))(), Teuchos::ScalarTraits<ScalarType>::zero(), inoutArg(mv));
307  }
308 
311  static void MvScale ( TMVB& mv, const ScalarType alpha )
312  {
313  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvScale")));
314 
315  Thyra::scale(alpha, Teuchos::inoutArg(mv));
316  }
317 
320  static void MvScale (TMVB& mv, const std::vector<ScalarType>& alpha)
321  {
322  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvScale")));
323 
324  for (unsigned int i=0; i<alpha.size(); i++) {
325  Thyra::scale<ScalarType> (alpha[i], mv.col(i).ptr());
326  }
327  }
328 
331  static void MvTransMv( const ScalarType alpha, const TMVB& A, const TMVB& mv,
333  {
334  using Teuchos::arrayView; using Teuchos::arcpFromArrayView;
335 
336  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvTransMv")));
337 
338  // Create a multivector to hold the result (m by n)
339  int m = A.domain()->dim();
340  int n = mv.domain()->dim();
341  auto vs = A.domain();
342  // Create a view of the B object!
344  B_thyra = vs->createCachedMembersView(
346  0, m, 0, n,
347  arcpFromArrayView(arrayView(&B(0,0), B.stride()*B.numCols())), B.stride()
348  )
349  );
350  Thyra::apply<ScalarType>(A, Thyra::CONJTRANS, mv, B_thyra.ptr(), alpha);
351  }
352 
356  static void MvDot( const TMVB& mv, const TMVB& A, std::vector<ScalarType>& b )
357  {
358  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvDot")));
359 
360  Thyra::dots(mv, A, Teuchos::arrayViewFromVector(b));
361  }
362 
364 
367 
371  static void MvNorm( const TMVB& mv, std::vector<magType>& normvec,
372  NormType type = TwoNorm ) {
373  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::MvNorm")));
374 
375  if(type == TwoNorm)
376  Thyra::norms_2(mv, Teuchos::arrayViewFromVector(normvec));
377  else if(type == OneNorm)
378  Thyra::norms_1(mv, Teuchos::arrayViewFromVector(normvec));
379  else if(type == InfNorm)
380  Thyra::norms_inf(mv, Teuchos::arrayViewFromVector(normvec));
381  else
382  TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument,
383  "Belos::MultiVecTraits::MvNorm (Thyra specialization): "
384  "invalid norm type. Must be either TwoNorm, OneNorm or InfNorm");
385  }
386 
388 
391 
394  static void SetBlock( const TMVB& A, const std::vector<int>& index, TMVB& mv )
395  {
396  // Extract the "numvecs" columns of mv indicated by the index std::vector.
397  int numvecs = index.size();
398  std::vector<int> indexA(numvecs);
399  int numAcols = A.domain()->dim();
400  for (int i=0; i<numvecs; i++) {
401  indexA[i] = i;
402  }
403  // Thyra::assign requires that both arguments have the same number of
404  // vectors. Enforce this, by shrinking one to match the other.
405  if ( numAcols < numvecs ) {
406  // A does not have enough columns to satisfy index_plus. Shrink
407  // index_plus.
408  numvecs = numAcols;
409  }
410  else if ( numAcols > numvecs ) {
411  numAcols = numvecs;
412  indexA.resize( numAcols );
413  }
414  // create a view to the relevant part of the source multivector
415  Teuchos::RCP< const TMVB > relsource = A.subView(indexA);
416  // create a view to the relevant part of the destination multivector
417  Teuchos::RCP< TMVB > reldest = mv.subView(index);
418  // copy the data to the destination multivector subview
419  Thyra::assign(reldest.ptr(), *relsource);
420  }
421 
422  static void
423  SetBlock (const TMVB& A, const Teuchos::Range1D& index, TMVB& mv)
424  {
425  const int numColsA = A.domain()->dim();
426  const int numColsMv = mv.domain()->dim();
427  // 'index' indexes into mv; it's the index set of the target.
428  const bool validIndex = index.lbound() >= 0 && index.ubound() < numColsMv;
429  // We can't take more columns out of A than A has.
430  const bool validSource = index.size() <= numColsA;
431 
432  if (! validIndex || ! validSource)
433  {
434  std::ostringstream os;
435  os << "Belos::MultiVecTraits<Scalar, Thyra::MultiVectorBase<Scalar> "
436  ">::SetBlock(A, [" << index.lbound() << ", " << index.ubound()
437  << "], mv): ";
438  TEUCHOS_TEST_FOR_EXCEPTION(index.lbound() < 0, std::invalid_argument,
439  os.str() << "Range lower bound must be nonnegative.");
440  TEUCHOS_TEST_FOR_EXCEPTION(index.ubound() >= numColsMv, std::invalid_argument,
441  os.str() << "Range upper bound must be less than "
442  "the number of columns " << numColsA << " in the "
443  "'mv' output argument.");
444  TEUCHOS_TEST_FOR_EXCEPTION(index.size() > numColsA, std::invalid_argument,
445  os.str() << "Range must have no more elements than"
446  " the number of columns " << numColsA << " in the "
447  "'A' input argument.");
448  TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "Should never get here!");
449  }
450 
451  // View of the relevant column(s) of the target multivector mv.
452  // We avoid view creation overhead by only creating a view if
453  // the index range is different than [0, (# columns in mv) - 1].
454  Teuchos::RCP<TMVB> mv_view;
455  if (index.lbound() == 0 && index.ubound()+1 == numColsMv)
456  mv_view = Teuchos::rcpFromRef (mv); // Non-const, non-owning RCP
457  else
458  mv_view = mv.subView (index);
459 
460  // View of the relevant column(s) of the source multivector A.
461  // If A has fewer columns than mv_view, then create a view of
462  // the first index.size() columns of A.
464  if (index.size() == numColsA)
465  A_view = Teuchos::rcpFromRef (A); // Const, non-owning RCP
466  else
467  A_view = A.subView (Teuchos::Range1D(0, index.size()-1));
468 
469  // Copy the data to the destination multivector.
470  Thyra::assign(mv_view.ptr(), *A_view);
471  }
472 
473  static void
474  Assign (const TMVB& A, TMVB& mv)
475  {
476  Teuchos::TimeMonitor tM(*Teuchos::TimeMonitor::getNewTimer(std::string("Belos::MVT::Assign")));
477 
478  const int numColsA = A.domain()->dim();
479  const int numColsMv = mv.domain()->dim();
480  if (numColsA > numColsMv)
481  {
482  std::ostringstream os;
483  os << "Belos::MultiVecTraits<Scalar, Thyra::MultiVectorBase<Scalar>"
484  " >::Assign(A, mv): ";
485  TEUCHOS_TEST_FOR_EXCEPTION(numColsA > numColsMv, std::invalid_argument,
486  os.str() << "Input multivector 'A' has "
487  << numColsA << " columns, but output multivector "
488  "'mv' has only " << numColsMv << " columns.");
489  TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "Should never get here!");
490  }
491  // Copy the data to the destination multivector.
492  if (numColsA == numColsMv) {
493  Thyra::assign (Teuchos::outArg (mv), A);
494  } else {
495  Teuchos::RCP<TMVB> mv_view =
496  CloneViewNonConst (mv, Teuchos::Range1D(0, numColsA-1));
497  Thyra::assign (mv_view.ptr(), A);
498  }
499  }
500 
503  static void MvRandom( TMVB& mv )
504  {
505  // Thyra::randomize generates via a uniform distribution on [l,u]
506  // We will use this to generate on [-1,1]
507  Thyra::randomize<ScalarType>(
510  Teuchos::outArg(mv));
511  }
512 
514  static void
515  MvInit (TMVB& mv, ScalarType alpha = Teuchos::ScalarTraits<ScalarType>::zero())
516  {
517  Thyra::assign (Teuchos::outArg (mv), alpha);
518  }
519 
521 
524 
527  static void MvPrint( const TMVB& mv, std::ostream& os )
528  { os << describe(mv,Teuchos::VERB_EXTREME); }
529 
531 
532 #ifdef HAVE_BELOS_TSQR
533  typedef Thyra::TsqrAdaptor< ScalarType > tsqr_adaptor_type;
539 #endif // HAVE_BELOS_TSQR
540  };
541 
543  //
544  // Implementation of the Belos::OperatorTraits for Thyra::LinearOpBase
545  //
547 
555  template<class ScalarType>
556  class OperatorTraits <ScalarType,
557  Thyra::MultiVectorBase<ScalarType>,
558  Thyra::LinearOpBase<ScalarType> >
559  {
560  private:
563 
564  public:
580  static void
581  Apply (const TLOB& Op,
582  const TMVB& x,
583  TMVB& y,
584  ETrans trans = NOTRANS)
585  {
586  Thyra::EOpTransp whichOp;
587 
588  // We don't check here whether the operator implements the
589  // requested operation. Call HasApplyTranspose() to check.
590  // Thyra::LinearOpBase implementations are not required to
591  // implement NOTRANS. However, Belos needs NOTRANS
592  // (obviously!), so we assume that Op implements NOTRANS.
593  if (trans == NOTRANS)
594  whichOp = Thyra::NOTRANS;
595  else if (trans == TRANS)
596  whichOp = Thyra::TRANS;
597  else if (trans == CONJTRANS)
598  whichOp = Thyra::CONJTRANS;
599  else
600  TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument,
601  "Belos::OperatorTraits::Apply (Thyra specialization): "
602  "'trans' argument must be neither NOTRANS=" << NOTRANS
603  << ", TRANS=" << TRANS << ", or CONJTRANS=" << CONJTRANS
604  << ", but instead has an invalid value of " << trans << ".");
605  Thyra::apply<ScalarType>(Op, whichOp, x, Teuchos::outArg(y));
606  }
607 
609  static bool HasApplyTranspose (const TLOB& Op)
610  {
612 
613  // Thyra::LinearOpBase's interface lets you check whether the
614  // operator implements any of all four possible combinations of
615  // conjugation and transpose. Belos only needs transpose
616  // (TRANS) if the operator is real; in that case, Apply() does
617  // the same thing with trans = CONJTRANS or TRANS. If the
618  // operator is complex, Belos needs both transpose and conjugate
619  // transpose (CONJTRANS) if the operator is complex.
620  return Op.opSupported (Thyra::TRANS) &&
621  (! STS::isComplex || Op.opSupported (Thyra::CONJTRANS));
622  }
623  };
624 
625 } // end of Belos namespace
626 
627 #endif
628 // end of file BELOS_THYRA_ADAPTER_HPP
static int GetNumberVecs(const TMVB &mv)
Obtain the number of vectors in mv.
virtual RCP< const VectorSpaceBase< Scalar > > range() const =0
EOpTransp
static ptrdiff_t GetGlobalLength(const TMVB &mv)
Obtain the std::vector length of mv.
static void MvPrint(const TMVB &mv, std::ostream &os)
Print the mv multi-std::vector to the os output stream.
Stub adaptor from Thyra::MultiVectorBase to TSQR.
#define TEUCHOS_TEST_FOR_EXCEPTION(throw_exception_test, Exception, msg)
static Teuchos::RCP< const MV > CloneView(const MV &mv, const std::vector< int > &index)
static Teuchos::RCP< TMVB > CloneCopy(const TMVB &mv, const std::vector< int > &index)
Creates a new MultiVectorBase and copies the selected contents of mv into the new std::vector (deep c...
static void MvTransMv(const ScalarType alpha, const TMVB &A, const TMVB &mv, Teuchos::SerialDenseMatrix< int, ScalarType > &B)
Compute a dense matrix B through the matrix-matrix multiply .
static void MvInit(MV &mv, const ScalarType alpha=Teuchos::ScalarTraits< ScalarType >::zero())
static void MvScale(TMVB &mv, const std::vector< ScalarType > &alpha)
Scale each element of the i-th vector in *this with alpha[i].
static void MvDot(const TMVB &mv, const TMVB &A, std::vector< ScalarType > &b)
Compute a std::vector b where the components are the individual dot-products of the i-th columns of A...
Ordinal ubound() const
static void Assign(const MV &A, MV &mv)
static Teuchos::RCP< TMVB > CloneCopy(const TMVB &mv)
Creates a new MultiVectorBase and copies contents of mv into the new std::vector (deep copy)...
static RCP< Time > getNewTimer(const std::string &name)
static void MvScale(TMVB &mv, const ScalarType alpha)
Scale each element of the vectors in *this with alpha.
static void SetBlock(const MV &A, const std::vector< int > &index, MV &mv)
RCP< const MultiVectorBase< Scalar > > subView(const Range1D &colRng) const
static Teuchos::RCP< MV > CloneViewNonConst(MV &mv, const std::vector< int > &index)
static void MvTimesMatAddMv(const ScalarType alpha, const TMVB &A, const Teuchos::SerialDenseMatrix< int, ScalarType > &B, const ScalarType beta, TMVB &mv)
Update mv with .
Ptr< T > ptr() const
RCP< const VectorBase< Scalar > > col(Ordinal j) const
static Teuchos::RCP< const TMVB > CloneView(const TMVB &mv, const std::vector< int > &index)
Creates a new const MultiVectorBase that shares the selected contents of mv (shallow copy)...
static void Apply(const TLOB &Op, const TMVB &x, TMVB &y, ETrans trans=NOTRANS)
Apply Op to x, storing the result in y.
static void MvRandom(TMVB &mv)
Replace the vectors in mv with random vectors.
static Teuchos::RCP< MV > CloneCopy(const MV &mv)
Ordinal lbound() const
OrdinalType numCols() const
virtual RCP< const VectorSpaceBase< Scalar > > domain() const =0
static void SetBlock(const TMVB &A, const std::vector< int > &index, TMVB &mv)
Copy the vectors in A to a set of vectors in mv indicated by the indices given in index...
Ordinal size() const
static void MvNorm(const TMVB &mv, std::vector< magType > &normvec, NormType type=TwoNorm)
Compute the 2-norm of each individual std::vector of mv. Upon return, normvec[i] holds the value of ...
static bool HasApplyTranspose(const TLOB &Op)
Whether the operator implements applying the transpose.
static Teuchos::RCP< TMVB > CloneViewNonConst(TMVB &mv, const std::vector< int > &index)
Creates a new MultiVectorBase that shares the selected contents of mv (shallow copy).
OrdinalType stride() const
static Teuchos::RCP< TMVB > Clone(const TMVB &mv, const int numvecs)
Creates a new empty MultiVectorBase containing numvecs columns.
static void MvAddMv(const ScalarType alpha, const TMVB &A, const ScalarType beta, const TMVB &B, TMVB &mv)
Replace mv with .
OrdinalType numRows() const
Teuchos::Range1D Range1D

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