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Concrete implementation of NOX::Epetra::LinearSolver for AztecOO. More...
#include <NOX_Epetra_LinearSystem_AztecOO.H>
Public Member Functions | |
LinearSystemAztecOO (Teuchos::ParameterList &printingParams, Teuchos::ParameterList &linearSolverParams, const Teuchos::RCP< NOX::Epetra::Interface::Required > &iReq, const NOX::Epetra::Vector &cloneVector, const Teuchos::RCP< NOX::Epetra::Scaling > scalingObject=Teuchos::null) | |
Constructor with no Operators. More... | |
LinearSystemAztecOO (Teuchos::ParameterList &printingParams, Teuchos::ParameterList &linearSolverParams, const Teuchos::RCP< NOX::Epetra::Interface::Required > &iReq, const Teuchos::RCP< NOX::Epetra::Interface::Jacobian > &iJac, const Teuchos::RCP< Epetra_Operator > &J, const NOX::Epetra::Vector &cloneVector, const Teuchos::RCP< NOX::Epetra::Scaling > scalingObject=Teuchos::null) | |
Constructor with a user supplied Jacobian Operator only. More... | |
LinearSystemAztecOO (Teuchos::ParameterList &printingParams, Teuchos::ParameterList &linearSolverParams, const Teuchos::RCP< NOX::Epetra::Interface::Required > &i, const Teuchos::RCP< NOX::Epetra::Interface::Preconditioner > &iPrec, const Teuchos::RCP< Epetra_Operator > &M, const NOX::Epetra::Vector &cloneVector, const Teuchos::RCP< NOX::Epetra::Scaling > scalingObject=Teuchos::null) | |
Constructor with a user supplied Preconditioner Operator only. More... | |
LinearSystemAztecOO (Teuchos::ParameterList &printingParams, Teuchos::ParameterList &linearSolverParams, const Teuchos::RCP< NOX::Epetra::Interface::Jacobian > &iJac, const Teuchos::RCP< Epetra_Operator > &J, const Teuchos::RCP< NOX::Epetra::Interface::Preconditioner > &iPrec, const Teuchos::RCP< Epetra_Operator > &M, const NOX::Epetra::Vector &cloneVector, const Teuchos::RCP< NOX::Epetra::Scaling > scalingObject=Teuchos::null) | |
virtual | ~LinearSystemAztecOO () |
Destructor. | |
virtual bool | applyJacobian (const NOX::Epetra::Vector &input, NOX::Epetra::Vector &result) const |
Applies Jacobian to the given input vector and puts the answer in the result. More... | |
virtual bool | applyJacobianTranspose (const NOX::Epetra::Vector &input, NOX::Epetra::Vector &result) const |
Applies Jacobian-Transpose to the given input vector and puts the answer in the result. More... | |
virtual bool | applyJacobianInverse (Teuchos::ParameterList &linearSolverParams, const NOX::Epetra::Vector &input, NOX::Epetra::Vector &result) |
Applies the inverse of the Jacobian matrix to the given input vector and puts the answer in result. More... | |
virtual bool | applyRightPreconditioning (bool useTranspose, Teuchos::ParameterList &linearSolverParams, const NOX::Epetra::Vector &input, NOX::Epetra::Vector &result) const |
Apply right preconditiong to the given input vector. More... | |
virtual bool | createPreconditioner (const NOX::Epetra::Vector &x, Teuchos::ParameterList &linearSolverParams, bool recomputeGraph) const |
Explicitly constructs a preconditioner based on the solution vector x and the parameter list p. More... | |
virtual bool | destroyPreconditioner () const |
Deletes all objects associated with the chosen preconditioner. This is called during linear solves and when the solution vector changes to reset the preconditioner. | |
virtual bool | recomputePreconditioner (const NOX::Epetra::Vector &x, Teuchos::ParameterList &linearSolverParams) const |
Recalculates the preconditioner using an already allocated graph. More... | |
virtual PreconditionerReusePolicyType | getPreconditionerPolicy (bool advanceReuseCounter=true) |
Evaluates the preconditioner policy at the current state. More... | |
virtual void | reset (Teuchos::ParameterList &linearSolverParams) |
Reset the linear solver parameters. | |
virtual Teuchos::RCP < NOX::Epetra::Scaling > | getScaling () |
Get the scaling object. | |
void | resetScaling (const Teuchos::RCP< NOX::Epetra::Scaling > &s) |
Sets the diagonal scaling vector(s) used in scaling the linear system. See NOX::Epetra::Scaling for details on how to specify scaling of the linear system. | |
virtual bool | computeJacobian (const NOX::Epetra::Vector &x) |
Compute the Jacobian. | |
virtual Teuchos::RCP< const NOX::Epetra::Interface::Jacobian > | getJacobianInterface () const |
NOX::Interface::Jacobian accessor. | |
virtual Teuchos::RCP< const NOX::Epetra::Interface::Preconditioner > | getPrecInterface () const |
NOX::Interface::Preconditioiner accessor. | |
virtual bool | isPreconditionerConstructed () const |
Indicates whether a preconditioner has been constructed. | |
virtual bool | hasPreconditioner () const |
Indicates whether the linear system has a preconditioner. | |
virtual Teuchos::RCP< const Epetra_Operator > | getJacobianOperator () const |
Jacobian Epetra_Operator accessor. | |
virtual Teuchos::RCP < Epetra_Operator > | getJacobianOperator () |
Jacobian Epetra_Operator accessor. | |
virtual Teuchos::RCP< const Epetra_Operator > | getPrecOperator () const |
Preconditioner Epetra_Operator accessor (only the base matrix if using an internal preconditioner - aztecoo or ifpack). | |
virtual Teuchos::RCP< const Epetra_Operator > | getGeneratedPrecOperator () const |
Return preconditioner operator generated and stored in AztecOO. More... | |
virtual Teuchos::RCP < Epetra_Operator > | getGeneratedPrecOperator () |
Return preconditioner operator generated and stored in AztecOO. | |
double | getTimeCreatePreconditioner () const |
Returns the total time (sec.) spent in createPreconditioner(). | |
double | getTimeApplyJacobianInverse () const |
Returns the total time (sec.) spent in applyJacobianInverse(). | |
virtual void | setJacobianOperatorForSolve (const Teuchos::RCP< const Epetra_Operator > &solveJacOp) |
Set Jacobian operator for solve. | |
virtual void | setPrecOperatorForSolve (const Teuchos::RCP< const Epetra_Operator > &solvePrecOp) |
Set preconditioner operator for solve. More... | |
Public Member Functions inherited from NOX::Epetra::LinearSystem | |
LinearSystem () | |
Constructor. | |
virtual | ~LinearSystem () |
Destructor. | |
virtual int | getNumLinearSolves () |
Statistics for number of times the linear solver has been called (def: 0) | |
virtual int | getLinearItersLastSolve () |
Statistics for number of iterations taken in last linear solve (def: 0) | |
virtual int | getLinearItersTotal () |
Statistics for cumulative number of iterations in all linear solve (def: 0) | |
virtual double | getAchievedTol () |
Statistics for the achieved tolerance of last linear solve (def: 0.0) | |
Protected Types | |
enum | OperatorType { EpetraOperator, EpetraRowMatrix, EpetraVbrMatrix, EpetraCrsMatrix } |
List of types of epetra objects that can be used for the Jacobian and/or Preconditioner. More... | |
enum | PreconditionerMatrixSourceType { UseJacobian, SeparateMatrix } |
Source of the RowMatrix if using an AztecOO native preconditioner. | |
enum | PreconditionerType { None_, AztecOO_, Ifpack_, NewIfpack_, ML_, UserDefined_ } |
Protected Member Functions | |
virtual void | setAztecOptions (Teuchos::ParameterList &lsParams, AztecOO &aztec) const |
Parse the parameter list and set the corresponding options in the AztecOO solver onject. | |
virtual bool | createJacobianOperator (Teuchos::ParameterList &printParams, Teuchos::ParameterList &lsParams, const Teuchos::RCP< NOX::Epetra::Interface::Required > &iReq, const NOX::Epetra::Vector &cloneVector) |
Creates an internally owned Epetra_Operator for the Jacobian. | |
virtual bool | createPrecOperator (Teuchos::ParameterList &printParams, Teuchos::ParameterList &lsParams, const Teuchos::RCP< NOX::Epetra::Interface::Required > &iReq, const NOX::Epetra::Vector &cloneVector) |
Creates an internally owned Epetra_Operator for the Preconditioner. | |
virtual bool | checkPreconditionerValidity () |
Checks to make sure that the supplied operators are valid for the requested preconditioning options set in the parameter list. | |
virtual bool | createIfpackPreconditioner (Teuchos::ParameterList &p) const |
Allocates the objects required for using ifpack preconditioners (NOX::Epetra::Group::ifpackGraph and NOX::Epetra::Group::ifpackPreconditioner). This is called from NOX::Epetra::Group::computePreconditioner(). | |
virtual bool | createNewIfpackPreconditioner (Teuchos::ParameterList &p) const |
Allocates the objects required for using the new version of ifpack preconditioners via the Ifpack Create factory. This is called from NOX::Epetra::Group::computePreconditioner(). | |
virtual OperatorType | getOperatorType (const Epetra_Operator &o) |
Deletes the AztecOO solver object. This is called when the solution vector for the group is changed. The preconditioner is no longer valid so the solver and preconditioner are destroyed by a call to this method. More... | |
virtual void | setAztecOOJacobian () const |
Sets the epetra Jacobian operator in the AztecOO object. More... | |
virtual void | setAztecOOPreconditioner () const |
Sets the epetra Preconditioner operator in the AztecOO object. More... | |
virtual void | throwError (const std::string &functionName, const std::string &errorMsg) const |
virtual void | precError (int error_code, const std::string &nox_function, const std::string &prec_type, const std::string &prec_function) const |
Prints a warning for ifpack preconditioner failures (error_code != 0). | |
Protected Attributes | |
NOX::Utils | utils |
Printing Utilities object. | |
Teuchos::RCP < NOX::Epetra::Interface::Jacobian > | jacInterfacePtr |
Reference to the user supplied Jacobian interface functions. | |
OperatorType | jacType |
Type of operator for the Jacobian. | |
Teuchos::RCP< Epetra_Operator > | jacPtr |
Pointer to the Jacobian operator. | |
Teuchos::RCP < NOX::Epetra::Interface::Preconditioner > | precInterfacePtr |
Reference to the user supplied preconditioner interface functions. | |
OperatorType | precType |
Type of operator for the preconditioner. | |
Teuchos::RCP< Epetra_Operator > | precPtr |
Pointer to the preconditioner operator. | |
PreconditionerMatrixSourceType | precMatrixSource |
PreconditionerType | precAlgorithm |
Teuchos::RCP< AztecOO > | aztecSolverPtr |
Aztec solver object. | |
Teuchos::RCP< Ifpack_IlukGraph > | ifpackGraphPtr |
Stores the ifpack graph. Mutable since the applyRightPreconditioner() is a const method. | |
Teuchos::RCP< Ifpack_CrsRiluk > | ifpackPreconditionerPtr |
Stores the ifpack preconditioner. Mutable since the applyRightPreconditioner() is a const method. | |
Teuchos::RCP < Ifpack_Preconditioner > | newIfpackPreconditionerPtr |
Stores the new ifpack preconditioner. Mutable since the applyRightPreconditioner() is a const method. | |
Teuchos::RCP < NOX::Epetra::Scaling > | scaling |
Scaling object supplied by the user. | |
Teuchos::RCP< NOX::Epetra::Vector > | tmpVectorPtr |
An extra temporary vector, only allocated if needed. | |
double | conditionNumberEstimate |
bool | isPrecConstructed |
True if the preconditioner has been computed. | |
bool | outputSolveDetails |
If set to true, solver information is printed to the "Output" sublist of the "Linear Solver" list. | |
bool | zeroInitialGuess |
Zero out the initial guess for linear solves performed through applyJacobianInverse calls (i.e. zero out the result vector before the linear solve). | |
bool | manualScaling |
Stores the parameter "Compute Scaling Manually". | |
PreconditionerReusePolicyType | precReusePolicy |
Policy for how to handle the preconditioner between nonlineaer iterations. | |
int | precQueryCounter |
Counter for number of times called since reset or construction. | |
int | maxAgeOfPrec |
Parameter to determine whether or not to recompute Preconditioner. | |
Epetra_Time | timer |
Epetra_Time object. | |
double | timeCreatePreconditioner |
Total time spent in createPreconditioner (sec.). | |
double | timeApplyJacbianInverse |
Total time spent in applyJacobianInverse (sec.). | |
Teuchos::RCP< Epetra_Operator > | solvePrecOpPtr |
Preconditioner operator that will be used in solves. | |
bool | throwErrorOnPrecFailure |
If true, any preconditioner error will cause a throw instead of a warning. | |
Additional Inherited Members | |
Public Types inherited from NOX::Epetra::LinearSystem | |
enum | PreconditionerReusePolicyType { PRPT_REBUILD, PRPT_RECOMPUTE, PRPT_REUSE } |
Determines handling of the preconditioner between nonlinear iterations. More... | |
Concrete implementation of NOX::Epetra::LinearSolver for AztecOO.
This solver provides the linear algebra services provided through the AztecOO parallel iterative linear solver.
The NOX::Epetra::LinearSystemAztecOO object provides a flexible and efficient way to interface an Epetra based application code to the Aztec linear solver. This class handles construction of both the preconditioners and AztecOO solver. All options are determined through parameter lists and the basic constructors.
Constructing a Linear System
There are four different constructors that can be used. The difference between constructors is based on whether the user supplies a Jacobian, a preconditioner, neither or both.
If a Jacobian is not supplied then this object can create an internally constructed Jacobian based on a Finite Difference or Matrif-Free object. The user can specify which type of object to use by setting the parameter "Jacobian Operator" in the parameter list. The choices are "Matrix-Free" or "Finite Difference".
The user can supply their own preconditioner as an Epetra_Operator, or they can supply their own matrix (an Epetra_RowMatrix derived object) that can be used by one of the internal preconditioner libraries (currently aztecoo or ifpack). If they supply their own preconditioner the object must implement the Epetra_Operator::ApplyInverse method. This is the method called during the linear solve to introduce preconditoning into aztecoo. If the user supplies a matrix to be used with an internal preconditioner, it must be derived from the Epetra_RowMatrix class and must implement all functionality in the Epetra_RowMatrix. If a Preconditioner is not supplied, then this object can create an internal preconditioner matrix by finite differencing or it can use the Jacobian operator if the Jacobian derives from the Epetra_RowMatrix class. The user can specify which type of object to use by setting the parameter "Preconditioner Operator" in the parameter list. The choices are "Use Jacobian" or "Finite Difference".
The Jacobian and preconditioner each require an interface to update the state of the operator with respect to the solution vector and any other parameters. There are three interfaces that can be implemented, NOX::Epetra::Interface::Required, NOX::Epetra::Interface::Jacobian, and NOX::Epetra::Interface::Preconditioner.
NOX::Epetra::Interface::Required supplies the computeF() function so codes can tell NOX what the nonlinear equations are. This is the minimum requirement to run nox through the epetra interface. LinearSolverAztecOO requires this in some constructors so that if a Jacobian or preconditoner is not supplied, it will use computeF from the Required interface to estimate the Jacobian or preconditioner via finite differences or directional derivatives.
NOX::Epetra::Interface::Jacobian is used for updating a user supplied Jacobian opertor with respect to the solution vector and any other parameters. It is required only in constructors in which a user supplies a Jacobian operator.
NOX::Epetra::Interface::Preconditioner is used for updating a user supplied preconditioner opertor/matrix with respect to the solution vector and any other parameters. It is required only in constructors in which a user supplies a preconditioner operator.
"Linear Solver" sublist parameters
A Teuchos::ParameterList called linearSolverParams is required in the various constructors and during some method calls such as applyJacobianInverse() and applyRightPreconditioning(). Typically, this list is the "Linear Solver" sublist found in the nox parameter list. The following parameters can be set in the linear solver sublist and are valid for the NOX::Epetra::LinearSolverAztecOO object:
"Aztec Solver" - Determine the iterative technique used in the solve. The following options are valid:
"Size of Krylov Subspace" - When using restarted GMRES this sets the maximum size of the Krylov subspace (defaults to 300).
"Orthogonalization" - The orthogonalization routine used for the Gram-Schmidt orthogonalization procedure in Aztec. The following options are valid:
"Convergence Test" - Algorithm used to calculate the residual that is used for determining the convergence of the linear solver. See the Aztec 2.1 manual for more information. The following options are valid:
"Tolerance" - Tolerance used by AztecOO to determine if an iterative linear solve has converged.
"Ill-Conditioning Threshold" - If the upper hessenberg matrix during GMRES generates a condition number greater than this parameter value, aztec will exit the linear solve returning the it's current solution. The default is 1.0e11.
"Preconditioner Iterations" - Number of iterations an AztecOO_Operator should take when solving the preconditioner. This is only used if an AztecOO preconditioner is used and the solver makes a call to NOX::Epetra::Group::applyRightPreconditioning(). This is NOT a recomended approach.
"Max Iterations" - maximum number of iterations in the linear solve. Default is 400.
"Zero Initial Guess" - boolean. Zero out the initial guess for linear solves performed through applyJacobianInverse calls (i.e. zero out the result vector before the linear solve). Defaults to false.
"Throw Error on Prec Failure" - boolean. If set to true, an exception will be thrown if the preconditioner fails to initialize or recompute/refactor. If set to false, a warning will br printed if the NOX::Utils::Warning is enabled in the printing utilities (NOX::Utils). Defaults to true.
"Output Frequency" - number of linear solve iterations between output of the linear solve residual. Takes an integer, or one of the AztecOO flags: AZ_none, AZ_last, or AZ_all as a value. Defaults to AZ_last.
"Jacobian Operator" - When a constructor does not require a Jacobian operator, the linear system will create a default operator using:
"Preconditioner" - Sets the choice of the preconditioner to use during linear solves. The validity of the choice of preconditioner will depend on the types of operators that are available for the Jacobian and preconditioner. NOTE: This flag will override any constructor details. For example, if you supply a preconditioner operator in the constructor, it will not be used if this flag is set to "None". If you supply an Epetra_Operator for the preconditioner but the "Preconditioner" flag is set to "AztecOO" (this requires an Epetra_RowMatrix for the preconditioner operator), this object will exit with a failure. The valid options and any requirements on the operator type are listed below:
"Jacobian Operator" - If a constructor is used that does not supply a Jacobian operator, nox will create an internal Jacobian operator. This flag is ONLY valid in such cases. This will determine which Operator is used:
"Preconditioner Operator" - If a constructor is used that does not supply a preconditioner operator, nox will create an internal preconditioner operator. This flag is ONLY valid in such cases. This will determine which Operator is used:
"Aztec Preconditioner" - If the "Preconditioner" flag is set to "AztecOO" then the specific AztecOO preconditioner is specified with this flag. Currently supported preconditioners and their corresponding parameters that can be set are shown below (See the Aztec 2.1 manual for more information):
"ilu" - ilu preconditioning. This choice allows the following additional parameters to be specified:
"ilut" - ilut preconditioning. This choice allows the following additional parameters to be specified:
"Jacobi" - k step Jacobi where k is set by the "Steps" flag:
"Symmetric Gauss-Siedel" - Non-overlapping domain decomposition k step symmetric Gauss-Siedel where k is set by the "Steps" flag:
"Polynomial" - Neumann polynomial with order set by the parameter:
"Least-squares Polynomial" - Least-squares polynomial with order set by the parameter:
"Ifpack" - If the "Preconditioner" flag is set to "New Ifpack" then any of the options supported by the Ifpack Create factory can be specified using a Teuchos::ParameterList containing the Ifpack options and then setting this as a parameter named "Ifpack" in the "Linear Solver" sublist.
"ML" - If the "Preconditioner" flag is set to "ML" then any of the options supported by the ML factory can be specified using a Teuchos::ParameterList containing the ML options and then setting this as a parameter named "ML" in the "Linear Solver" sublist.
"Preconditioner Reuse Policy" - (std::string) Allows the user to set how and when the preconditioner should be computed. This flag supports native Aztec, Ifpack and ML preconditioners. There are three options:
"Max Age Of Prec" - (int) If the "Preconditioner Reuse Policy" is set to "Reuse", this integer tells the linear system how many times to reuse the preconditioner before rebuilding it. Defaults to 1.
"RCM Reordering" - Enables RCM reordering in conjunction with domain decomp incomplete factorization preconditioning. The following options are valid:
"Use Adaptive Linear Solve" - Enables the use of AztecOO's AdaptiveIterate() method instead of calling the Iterate() method. This causes the preconditioning matrix to be modified to make the linear solves easier. AztecOO will attempt to solve the linear system multiple times now and if the solves are failing it will modify the preconditioner and try again. Boolean value, defaults to false. NOTE: This only works for internal Aztec preconditioners! The "Preconditioning" parameter must be set to "AztecOO: Jacobian Matrix" or "AztecOO: User RowMatrix". (NOTE: This parameter is currently NOT supported)
"Max Adaptive Solve Iterations" - (integer) Maximum number of attempts that the linear solver will make when trying to solve a linear system. Defaults to 5. (NOTE: This parameter is currently NOT supported)
"Compute Scaling Manually" - (boolean) The linear system can be scaled if a NOX::Epetra::Scaling object is supplied to LinearSystemAztecOO. When to compute the scaling can be handled either manually by the user, or this object can automatically compute the scaling prior to a linear solve. By setting this flag to true, the user will call NOX::Epetra::Scaling::computeScaling() manually - on their own! Setting this to false means the LinearSystemAztecOO object will call the computeScaling function right before it applies the scaling to the matrix in the applyJacobianInverse function. Default is true (user will call compute scaling).
"Output Solver Details" - (boolean) Write the output sublist below to the parameter list after each linear solve. default is true.
"Write Linear System" - (boolean) If set to true, the linear system (Epetra_Map, Jacobian, LHS and RHS) is printed to a set of files in matrix market format. This option requires building nox with the flag –enable-nox-debug and building the EpetraExt library.
"Write Linear System File Prefix" - (std::string) If writing of the linear system is enabled (see above parameter) users can change the name of the output file prefix. The default is "NOX_LinSys". This option requires building nox with the flag –enable-nox-debug and building the EpetraExt library.
"Output" sublist
The parameter list passed in during calls to ApplyJacobianInverse() will have an "Output" sublist created that contains the following parameters if the flag "Output Solver Details" is set to true:
"Acheived Tolerance" - Actual tolerance achieved by the linear solver computed via the convergence test requested.
"Number of Linear Iterations" - Number of iterations used by the linear solver in the last call to applyJacobianInverse
"Total Number of Linear Iterations" - Total number of linear solve iterations performed by groups that have used this input list
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List of types of epetra objects that can be used for the Jacobian and/or Preconditioner.
Enumerator | |
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EpetraOperator |
An Epetra_Operator derived object. |
EpetraRowMatrix |
An Epetra_RowMatrix derived object. |
EpetraVbrMatrix |
An Epetra_VbrMatrix object. |
EpetraCrsMatrix |
An Epetra_CrsMatrix object. |
NOX::Epetra::LinearSystemAztecOO::LinearSystemAztecOO | ( | Teuchos::ParameterList & | printingParams, |
Teuchos::ParameterList & | linearSolverParams, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Required > & | iReq, | ||
const NOX::Epetra::Vector & | cloneVector, | ||
const Teuchos::RCP< NOX::Epetra::Scaling > | scalingObject = Teuchos::null |
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Constructor with no Operators.
Jacobian Operator will be constructed internally based on the parameter "Jacobian Operator". Defaults to using a NOX::Epetra::MatrixFree object.
References aztecSolverPtr, createJacobianOperator(), createPrecOperator(), Teuchos::rcp(), reset(), and tmpVectorPtr.
NOX::Epetra::LinearSystemAztecOO::LinearSystemAztecOO | ( | Teuchos::ParameterList & | printingParams, |
Teuchos::ParameterList & | linearSolverParams, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Required > & | iReq, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Jacobian > & | iJac, | ||
const Teuchos::RCP< Epetra_Operator > & | J, | ||
const NOX::Epetra::Vector & | cloneVector, | ||
const Teuchos::RCP< NOX::Epetra::Scaling > | scalingObject = Teuchos::null |
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) |
Constructor with a user supplied Jacobian Operator only.
Either there is no preconditioning or the preconditioner will be used/created internally. The Jacobian (if derived from an Epetra_RowMatrix class can be used with an internal preconditioner. See the parameter key "Preconditioner Operator" for more details.
References aztecSolverPtr, createPrecOperator(), getOperatorType(), jacPtr, jacType, Teuchos::rcp(), reset(), and tmpVectorPtr.
NOX::Epetra::LinearSystemAztecOO::LinearSystemAztecOO | ( | Teuchos::ParameterList & | printingParams, |
Teuchos::ParameterList & | linearSolverParams, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Required > & | i, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Preconditioner > & | iPrec, | ||
const Teuchos::RCP< Epetra_Operator > & | M, | ||
const NOX::Epetra::Vector & | cloneVector, | ||
const Teuchos::RCP< NOX::Epetra::Scaling > | scalingObject = Teuchos::null |
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) |
Constructor with a user supplied Preconditioner Operator only.
Jacobian operator will be constructed internally based on the parameter "Jacobian Operator" in the parameter list. See the parameter key "Jacobian Operator" for more details. Defaults to using a NOX::Epetra::MatrixFree object.
References aztecSolverPtr, createJacobianOperator(), getOperatorType(), precPtr, precType, Teuchos::rcp(), reset(), and tmpVectorPtr.
NOX::Epetra::LinearSystemAztecOO::LinearSystemAztecOO | ( | Teuchos::ParameterList & | printingParams, |
Teuchos::ParameterList & | linearSolverParams, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Jacobian > & | iJac, | ||
const Teuchos::RCP< Epetra_Operator > & | J, | ||
const Teuchos::RCP< NOX::Epetra::Interface::Preconditioner > & | iPrec, | ||
const Teuchos::RCP< Epetra_Operator > & | M, | ||
const NOX::Epetra::Vector & | cloneVector, | ||
const Teuchos::RCP< NOX::Epetra::Scaling > | scalingObject = Teuchos::null |
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) |
Constructor with user supplied separate objects for the Jacobian (J) and Preconditioner (M). linearSolverParams is the "Linear Solver" sublist of parameter list.
References aztecSolverPtr, getOperatorType(), jacPtr, jacType, precPtr, precType, Teuchos::rcp(), reset(), and tmpVectorPtr.
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Applies Jacobian to the given input vector and puts the answer in the result.
Computes
where is the Jacobian, is the input vector, and is the result vector. Returns true if successful.
Implements NOX::Epetra::LinearSystem.
References NOX::Epetra::Vector::getEpetraVector().
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Applies the inverse of the Jacobian matrix to the given input vector and puts the answer in result.
Computes
where is the Jacobian, is the input vector, and is the result vector.
The parameter list contains the linear solver options.
Implements NOX::Epetra::LinearSystem.
References NOX::Utils::Details, Teuchos::ParameterList::get(), NOX::Epetra::Vector::getEpetraVector(), NOX::Epetra::Vector::init(), Teuchos::is_null(), Epetra_RowMatrix::RowMatrixRowMap(), Teuchos::ParameterList::set(), and Teuchos::ParameterList::sublist().
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Applies Jacobian-Transpose to the given input vector and puts the answer in the result.
Computes
where is the Jacobian, is the input vector, and is the result vector. Returns true if successful.
Implements NOX::Epetra::LinearSystem.
References NOX::Epetra::Vector::getEpetraVector().
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Apply right preconditiong to the given input vector.
Let be a right preconditioner for the Jacobian ; in other words, is a matrix such that
Compute
where is the input vector and is the result vector.
If useTranspose is true, then the transpose of the preconditioner is applied:
The transpose preconditioner is currently only required for Tensor methods.
The parameter list contains the linear solver options.
Implements NOX::Epetra::LinearSystem.
References Teuchos::ParameterList::get(), NOX::Epetra::Vector::getEpetraVector(), NOX::Epetra::Vector::init(), TEUCHOS_TEST_FOR_EXCEPTION, and NOX::Utils::Warning.
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Explicitly constructs a preconditioner based on the solution vector x and the parameter list p.
The user has the option of recomputing the graph when a new preconditioner is created. The NOX::Epetra::Group controls the isValid flag for the preconditioner and will control when to call this.
Implements NOX::Epetra::LinearSystem.
References NOX::Epetra::Vector::getEpetraVector(), Teuchos::is_null(), and NOX::Utils::LinearSolverDetails.
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Return preconditioner operator generated and stored in AztecOO.
Note: This should only be called if hasPreconditioner() returns true.
Implements NOX::Epetra::LinearSystem.
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Deletes the AztecOO solver object. This is called when the solution vector for the group is changed. The preconditioner is no longer valid so the solver and preconditioner are destroyed by a call to this method.
Returns the type of operator that is passed into the group constructors.
Uses dynamic casting to identify the underlying object type.
Referenced by LinearSystemAztecOO().
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Evaluates the preconditioner policy at the current state.
NOTE: This can change values between nonlienar iterations. It is not a static value.
Implements NOX::Epetra::LinearSystem.
References NOX::Utils::Details.
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Recalculates the preconditioner using an already allocated graph.
Use this to compute a new preconditioner while using the same graph for the preconditioner. This avoids deleting and reallocating the memory required for the preconditioner and results in a big speed-up for large-scale jobs.
Implements NOX::Epetra::LinearSystem.
References NOX::Epetra::Vector::getEpetraVector(), and NOX::Utils::LinearSolverDetails.
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Sets the epetra Jacobian operator in the AztecOO object.
Makes a call to SetUserMatrix or SetUserOperator to set the Jacobian.
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Sets the epetra Preconditioner operator in the AztecOO object.
Makes a call to SetUserOperator. This must be done AFTER the Jacobian matrix/operators is set by setAztecOOJacobian(), otherwise the aztec object may ignore this operation.
References Teuchos::is_null().
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Set preconditioner operator for solve.
Note: This should only be called if hasPreconditioner() returns true.
Implements NOX::Epetra::LinearSystem.