MueLu_CoordinatesTransferFactory_def.hpp

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#ifndef MUELU_COORDINATESTRANSFER_FACTORY_DEF_HPP
#define MUELU_COORDINATESTRANSFER_FACTORY_DEF_HPP

#include "Xpetra_ImportFactory.hpp"
#include "Xpetra_MultiVectorFactory.hpp"
#include "Xpetra_MapFactory.hpp"
#include "Xpetra_IO.hpp"

#include "MueLu_CoarseMapFactory.hpp"
#include "MueLu_Aggregates.hpp"
#include "MueLu_CoordinatesTransferFactory_decl.hpp"
//#include "MueLu_Utilities.hpp"

#include "MueLu_Level.hpp"
#include "MueLu_Monitor.hpp"

namespace MueLu {

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  RCP<const ParameterList> CoordinatesTransferFactory<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());

    validParamList->set<RCP<const FactoryBase> >("Coordinates",                  Teuchos::null, "Factory for coordinates generation");
    validParamList->set<RCP<const FactoryBase> >("Aggregates",                   Teuchos::null, "Factory for coordinates generation");
    validParamList->set<RCP<const FactoryBase> >("CoarseMap",                    Teuchos::null, "Generating factory of the coarse map");
    validParamList->set<bool>                   ("structured aggregation",       false, "Flag specifying that the geometric data is transferred for StructuredAggregationFactory");
    validParamList->set<bool>                   ("aggregation coupled",          false, "Flag specifying if the aggregation algorithm was used in coupled mode.");
    validParamList->set<bool>                   ("Geometric",                    false, "Flag specifying that the coordinates are transferred for GeneralGeometricPFactory");
    validParamList->set<RCP<const FactoryBase> >("coarseCoordinates",            Teuchos::null, "Factory for coarse coordinates generation");
    validParamList->set<RCP<const FactoryBase> >("gCoarseNodesPerDim",           Teuchos::null, "Factory providing the global number of nodes per spatial dimensions of the mesh");
    validParamList->set<RCP<const FactoryBase> >("lCoarseNodesPerDim",           Teuchos::null, "Factory providing the local number of nodes per spatial dimensions of the mesh");
    validParamList->set<RCP<const FactoryBase> >("numDimensions"     ,           Teuchos::null, "Factory providing the number of spatial dimensions of the mesh");
    validParamList->set<int>                    ("write start",                  -1, "first level at which coordinates should be written to file");
    validParamList->set<int>                    ("write end",                    -1, "last level at which coordinates should be written to file");
    validParamList->set<RCP<const FactoryBase> >("aggregationRegionTypeCoarse",  Teuchos::null, "Factory indicating what aggregation type is to be used on the coarse level of the region");
    validParamList->set<bool>                   ("hybrid aggregation",           false, "Flag specifying that hybrid aggregation data is transfered for HybridAggregationFactory");


    return validParamList;
  }

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void CoordinatesTransferFactory<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& fineLevel, Level& coarseLevel) const {
    static bool isAvailableCoords = false;

    const ParameterList& pL = GetParameterList();
    if(pL.get<bool>("structured aggregation") == true) {
      if(pL.get<bool>("aggregation coupled") == true) {
        Input(fineLevel, "gCoarseNodesPerDim");
      }
      Input(fineLevel, "lCoarseNodesPerDim");
      Input(fineLevel, "numDimensions");
    } else if(pL.get<bool>("Geometric") == true) {
      Input(coarseLevel, "coarseCoordinates");
      Input(coarseLevel, "gCoarseNodesPerDim");
      Input(coarseLevel, "lCoarseNodesPerDim");
    } else {
      if (coarseLevel.GetRequestMode() == Level::REQUEST)
        isAvailableCoords = coarseLevel.IsAvailable("Coordinates", this);

      if (isAvailableCoords == false) {
        Input(fineLevel, "Coordinates");
        Input(fineLevel, "Aggregates");
        Input(fineLevel, "CoarseMap");
      }
    }
    if(pL.get<bool>("hybrid aggregation") == true) {
      Input(fineLevel,"aggregationRegionTypeCoarse");
      Input(fineLevel, "lCoarseNodesPerDim");
    }
  }

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void CoordinatesTransferFactory<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Build(Level & fineLevel, Level &coarseLevel) const {
    FactoryMonitor m(*this, "Build", coarseLevel);

    using xdMV = Xpetra::MultiVector<typename Teuchos::ScalarTraits<Scalar>::coordinateType,LO,GO,NO>;

    GetOStream(Runtime0) << "Transferring coordinates" << std::endl;

    int numDimensions;
    RCP<xdMV> coarseCoords;
    RCP<xdMV> fineCoords;
    Array<GO> gCoarseNodesPerDir;
    Array<LO> lCoarseNodesPerDir;

    const ParameterList& pL = GetParameterList();

    if(pL.get<bool>("hybrid aggregation") == true) {
      std::string regionType = Get<std::string>(fineLevel,"aggregationRegionTypeCoarse");
      lCoarseNodesPerDir     = Get<Array<LO> >(fineLevel, "lCoarseNodesPerDim");
      Set<std::string>(coarseLevel, "aggregationRegionType", regionType);
      Set< Array<LO> >(coarseLevel, "lNodesPerDim", lCoarseNodesPerDir);
    }

    if(pL.get<bool>("structured aggregation") == true) {
      if(pL.get<bool>("aggregation coupled") == true) {
        gCoarseNodesPerDir = Get<Array<GO> >(fineLevel, "gCoarseNodesPerDim");
        Set<Array<GO> >(coarseLevel, "gNodesPerDim", gCoarseNodesPerDir);
      }
      lCoarseNodesPerDir = Get<Array<LO> >(fineLevel, "lCoarseNodesPerDim");
      Set<Array<LO> >(coarseLevel, "lNodesPerDim", lCoarseNodesPerDir);
      numDimensions = Get<int>(fineLevel, "numDimensions");
      Set<int>(coarseLevel, "numDimensions", numDimensions);
    } else if(pL.get<bool>("Geometric") == true) {
      coarseCoords       = Get<RCP<xdMV> >(coarseLevel, "coarseCoordinates");
      gCoarseNodesPerDir = Get<Array<GO> >(coarseLevel, "gCoarseNodesPerDim");
      lCoarseNodesPerDir = Get<Array<LO> >(coarseLevel, "lCoarseNodesPerDim");
      Set<Array<GO> >(coarseLevel, "gNodesPerDim", gCoarseNodesPerDir);
      Set<Array<LO> >(coarseLevel, "lNodesPerDim", lCoarseNodesPerDir);

      Set<RCP<xdMV> >(coarseLevel, "Coordinates", coarseCoords);

    } else {
      if (coarseLevel.IsAvailable("Coordinates", this)) {
        GetOStream(Runtime0) << "Reusing coordinates" << std::endl;
        return;
      }

      RCP<Aggregates>     aggregates = Get< RCP<Aggregates> > (fineLevel, "Aggregates");
      fineCoords                     = Get< RCP<xdMV> >(fineLevel, "Coordinates");
      RCP<const Map>      coarseMap  = Get< RCP<const Map> >  (fineLevel, "CoarseMap");

      // coarseMap is being used to set up the domain map of tentative P, and therefore, the row map of Ac
      // Therefore, if we amalgamate coarseMap, logical nodes in the coordinates vector would correspond to
      // logical blocks in the matrix

      ArrayView<const GO> elementAList = coarseMap->getNodeElementList();

      LO                  blkSize      = 1;
      if (rcp_dynamic_cast<const StridedMap>(coarseMap) != Teuchos::null)
        blkSize = rcp_dynamic_cast<const StridedMap>(coarseMap)->getFixedBlockSize();

      GO                  indexBase    = coarseMap->getIndexBase();
      size_t              numElements  = elementAList.size() / blkSize;
      Array<GO>           elementList(numElements);

      // Amalgamate the map
      for (LO i = 0; i < Teuchos::as<LO>(numElements); i++)
        elementList[i] = (elementAList[i*blkSize]-indexBase)/blkSize + indexBase;

      RCP<const Map>   uniqueMap      = fineCoords->getMap();
      RCP<const Map>   coarseCoordMap = MapFactory        ::Build(coarseMap->lib(), Teuchos::OrdinalTraits<Xpetra::global_size_t>::invalid(), elementList, indexBase, coarseMap->getComm());
      coarseCoords   = Xpetra::MultiVectorFactory<typename Teuchos::ScalarTraits<Scalar>::coordinateType,LO,GO,NO>::Build(coarseCoordMap, fineCoords->getNumVectors());

      // Create overlapped fine coordinates to reduce global communication
      RCP<xdMV> ghostedCoords = fineCoords;
      if (aggregates->AggregatesCrossProcessors()) {
        RCP<const Map>    nonUniqueMap = aggregates->GetMap();
        RCP<const Import> importer     = ImportFactory::Build(uniqueMap, nonUniqueMap);

        ghostedCoords = Xpetra::MultiVectorFactory<typename Teuchos::ScalarTraits<Scalar>::coordinateType,LO,GO,NO>::Build(nonUniqueMap, fineCoords->getNumVectors());
        ghostedCoords->doImport(*fineCoords, *importer, Xpetra::INSERT);
      }

      // Get some info about aggregates
      int                         myPID        = uniqueMap->getComm()->getRank();
      LO                          numAggs      = aggregates->GetNumAggregates();
      ArrayRCP<LO>                aggSizes     = aggregates->ComputeAggregateSizes();
      const ArrayRCP<const LO>    vertex2AggID = aggregates->GetVertex2AggId()->getData(0);
      const ArrayRCP<const LO>    procWinner   = aggregates->GetProcWinner()->getData(0);

      // Fill in coarse coordinates
      for (size_t j = 0; j < fineCoords->getNumVectors(); j++) {
        ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> fineCoordsData = ghostedCoords->getData(j);
        ArrayRCP<typename Teuchos::ScalarTraits<Scalar>::coordinateType>     coarseCoordsData = coarseCoords->getDataNonConst(j);

        for (LO lnode = 0; lnode < vertex2AggID.size(); lnode++) {
          if (procWinner[lnode] == myPID &&
              lnode < vertex2AggID.size() &&
              lnode < fineCoordsData.size() && // TAW do not access off-processor coordinates
              vertex2AggID[lnode] < coarseCoordsData.size() &&
              Teuchos::ScalarTraits<typename Teuchos::ScalarTraits<Scalar>::coordinateType>::isnaninf(fineCoordsData[lnode]) == false) {
            coarseCoordsData[vertex2AggID[lnode]] += fineCoordsData[lnode];
          }
        }
        for (LO agg = 0; agg < numAggs; agg++) {
          coarseCoordsData[agg] /= aggSizes[agg];
        }
      }

      Set<RCP<xdMV> >(coarseLevel, "Coordinates", coarseCoords);
    } // if pL.get<bool>("Geometric") == true

    int writeStart = pL.get<int>("write start"), writeEnd = pL.get<int>("write end");
    if (writeStart == 0 && fineLevel.GetLevelID() == 0 && writeStart <= writeEnd) {
      std::ostringstream buf;
      buf << fineLevel.GetLevelID();
      std::string fileName = "coordinates_before_rebalance_level_" + buf.str() + ".m";
      Xpetra::IO<typename Teuchos::ScalarTraits<Scalar>::coordinateType,LO,GO,NO>::Write(fileName,*fineCoords);
    }
    if (writeStart <= coarseLevel.GetLevelID() && coarseLevel.GetLevelID() <= writeEnd) {
      std::ostringstream buf;
      buf << coarseLevel.GetLevelID();
      std::string fileName = "coordinates_before_rebalance_level_" + buf.str() + ".m";
      Xpetra::IO<typename Teuchos::ScalarTraits<Scalar>::coordinateType,LO,GO,NO>::Write(fileName,*coarseCoords);
    }
  }

} // namespace MueLu

#endif // MUELU_COORDINATESTRANSFER_FACTORY_DEF_HPP