MueLu_AggregationExportFactory_decl.hpp

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/*
 * MueLu_AggregationExportFactory_decl.hpp
 *
 *  Created on: Feb 10, 2012
 *      Author: wiesner
 */

#ifndef MUELU_AGGREGATIONEXPORTFACTORY_DECL_HPP_
#define MUELU_AGGREGATIONEXPORTFACTORY_DECL_HPP_

#include <Xpetra_Matrix_fwd.hpp>
#include <Xpetra_CrsMatrixWrap_fwd.hpp>

#include "MueLu_ConfigDefs.hpp"
#include "MueLu_TwoLevelFactoryBase.hpp"
#include "MueLu_VisualizationHelpers.hpp"
#include "MueLu_AggregationExportFactory_fwd.hpp"
#include "MueLu_Aggregates_fwd.hpp"
#include "MueLu_Graph_fwd.hpp"
#include "MueLu_GraphBase.hpp"
#include "MueLu_AmalgamationFactory_fwd.hpp"
#include "MueLu_AmalgamationInfo_fwd.hpp"
#include "MueLu_Utilities_fwd.hpp"

namespace MueLu {

  class Level;

  template <class Scalar = DefaultScalar,
            class LocalOrdinal = DefaultLocalOrdinal,
            class GlobalOrdinal = DefaultGlobalOrdinal,
            class Node = DefaultNode>
  class AggregationExportFactory : public TwoLevelFactoryBase, public VisualizationHelpers<Scalar, LocalOrdinal, GlobalOrdinal, Node> {
#undef MUELU_AGGREGATIONEXPORTFACTORY_SHORT
#include "MueLu_UseShortNames.hpp"

  public:


    AggregationExportFactory() :
      doFineGraphEdges_(false),
      doCoarseGraphEdges_(false),
      numNodes_(0),
      numAggs_(0),
      dims_(0),
      myRank_(-1),
      aggsOffset_(0)
    { }

    virtual ~AggregationExportFactory() { }

    RCP<const ParameterList> GetValidParameterList() const;



    void DeclareInput(Level &fineLevel, Level &coarseLevel) const;



    void Build(Level &fineLevel, Level &coarseLevel) const;


  private:
    //Break different viz styles into separate functions for organization:
    void doJacksPlus_(std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    void doConvexHulls(std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    #ifdef HAVE_MUELU_CGAL
    void doAlphaHulls_(std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    void doAlphaHulls2D_(std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    void doAlphaHulls3D_(std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    #endif
    void doGraphEdges_(std::ofstream& fout, Teuchos::RCP<Matrix>& A, Teuchos::RCP<GraphBase>& G, bool fine, int dofs) const; //add geometry to display node connections from a matrix. Connections in graph but not matrix have different color.

    // write VTK data
    void writeFile_(std::ofstream& fout, std::string styleName, std::vector<int>& vertices, std::vector<int>& geomSizes) const;
    void buildColormap_() const;
    void writePVTU_(std::ofstream& pvtu, std::string baseFname, int numProcs) const;

    static const int CONTRAST_1_ = -1;
    static const int CONTRAST_2_ = -2;
    static const int CONTRAST_3_ = -3;

    //Data that the different styles need to have available when building geometry
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> xCoords_; //fine local coordinates
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> yCoords_;
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> zCoords_;
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> cx_; //coarse local coordinates
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> cy_;
    mutable Teuchos::ArrayRCP<const typename Teuchos::ScalarTraits<Scalar>::coordinateType> cz_;
    mutable Teuchos::ArrayRCP<LocalOrdinal> vertex2AggId_;
    mutable Teuchos::ArrayRCP<LocalOrdinal> aggSizes_;
    mutable std::vector<bool> isRoot_;
    mutable bool doFineGraphEdges_;
    mutable bool doCoarseGraphEdges_;
    mutable int numNodes_;
    mutable int numAggs_;
    mutable int dims_;
    mutable int myRank_;
    mutable Teuchos::RCP<const Map> nodeMap_; //map used in A and Coordinates to map local ordinals to global ordinals. Need the whole map especially if it's not contiguous.
    mutable Teuchos::RCP<const Map> nodeMapCoarse_; //Map for Ac
    mutable int aggsOffset_;            //in a global list of aggregates, the offset of local aggregate indices
  }; // class AggregationExportFactory
} // namespace MueLu

#define MUELU_AGGREGATIONEXPORTFACTORY_SHORT

#endif /* MUELU_AGGREGATIONEXPORTFACTORY_DECL_HPP_ */