A Matrix adapter interface for Amesos2. More...

#include <Amesos2_MatrixAdapter_decl.hpp>

Inheritance diagram for Amesos2::MatrixAdapter< Matrix >:

Public Types
typedef MatrixTraits< Matrix > ::scalar_t	scalar_t

typedef MatrixTraits< Matrix > ::local_ordinal_t	local_ordinal_t

typedef MatrixTraits< Matrix > ::global_ordinal_t	global_ordinal_t

typedef MatrixTraits< Matrix > ::node_t	node_t

typedef Tpetra::global_size_t	global_size_t

typedef Matrix	matrix_t

typedef MatrixAdapter< Matrix >	type

typedef ConcreteMatrixAdapter < Matrix >	adapter_t

typedef MatrixTraits< Matrix > ::local_matrix_t	local_matrix_t

typedef MatrixTraits< Matrix > ::sparse_ptr_type	spmtx_ptr_t

typedef MatrixTraits< Matrix > ::sparse_idx_type	spmtx_idx_t

typedef MatrixTraits< Matrix > ::sparse_values_type	spmtx_vals_t

Public Member Functions
	MatrixAdapter (Teuchos::RCP< Matrix > m)

void	getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EStorage_Ordering ordering=ARBITRARY, EDistribution distribution=ROOTED) const
	Gets a compressed-row storage summary of `this`. More...

template<typename KV_S , typename KV_GO , typename KV_GS >
void	getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EStorage_Ordering ordering=ARBITRARY, EDistribution distribution=ROOTED) const

void	getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, EDistribution distribution, EStorage_Ordering ordering=ARBITRARY) const

void	getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EStorage_Ordering ordering=ARBITRARY, EDistribution distribution=ROOTED) const
	Gets a compressed-column storage summary of `this`. More...

template<typename KV_S , typename KV_GO , typename KV_GS >
void	getCcs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EStorage_Ordering ordering=ARBITRARY, EDistribution distribution=ROOTED) const

void	getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, EDistribution distribution, EStorage_Ordering ordering=ARBITRARY) const

const Teuchos::RCP< const Teuchos::Comm< int > >	getComm () const
	Returns the Teuchos::Comm object associated with this matrix.

global_size_t	getGlobalNumRows () const
	Get the number of rows in this matrix.

global_size_t	getGlobalNumCols () const
	Get the number of columns in this matrix.

global_size_t	getRowIndexBase () const
	Get the indexbase for the row map.

global_size_t	getColumnIndexBase () const
	Get the indexbase for the column map.

global_size_t	getGlobalNNZ () const
	Get the global number of non-zeros in this sparse matrix.

size_t	getLocalNumRows () const
	Get the number of rows local to the calling process.

size_t	getLocalNumCols () const
	Get the number of columns local to the calling process.

size_t	getLocalNNZ () const
	Get the local number of non-zeros on this processor.

Teuchos::RCP< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	getMap () const

Teuchos::RCP< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	getRowMap () const

Teuchos::RCP< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	getColMap () const

Teuchos::RCP< const type >	get (const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > map, EDistribution distribution=ROOTED) const

std::string	description () const
	Returns a short description of this Solver.

void	describe (Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const
	Describes of this matrix adapter with some level of verbosity.

spmtx_ptr_t	returnRowPtr () const
	Return raw pointer from CRS row pointer of matrixA_.

spmtx_idx_t	returnColInd () const
	Return raw pointer from CRS column indices of matrixA_.

spmtx_vals_t	returnValues () const
	Return raw pointer from CRS values of matrixA_.

template<typename KV >
void	returnRowPtr_kokkos_view (KV &view) const
	Return kokkos view of CRS row pointer of matrixA_.

template<typename KV >
void	returnColInd_kokkos_view (KV &view) const
	Return kokkos view of CRS column indices of matrixA_.

template<typename KV >
void	returnValues_kokkos_view (KV &view) const
	Return kokkos view of CRS values of matrixA_.

template<typename KV_S , typename KV_GO , typename KV_GS >
void	getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EStorage_Ordering ordering, EDistribution distribution) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	getCcs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EStorage_Ordering ordering, EDistribution distribution) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	help_getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	do_getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	help_getCcs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	do_getCcs_kokkos_view (KV_S &nzval, KV_GO &rowind, KV_GS &colptr, typename MatrixAdapter< Matrix >::global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

Protected Member Functions
void	getGlobalRowCopy (global_ordinal_t row, const Teuchos::ArrayView< global_ordinal_t > &indices, const Teuchos::ArrayView< scalar_t > &vals, size_t &nnz) const

void	getGlobalColCopy (global_ordinal_t col, const Teuchos::ArrayView< global_ordinal_t > &indices, const Teuchos::ArrayView< scalar_t > &vals, size_t &nnz) const

size_t	getMaxRowNNZ () const

size_t	getMaxColNNZ () const

size_t	getGlobalRowNNZ (global_ordinal_t row) const

size_t	getLocalRowNNZ (local_ordinal_t row) const

size_t	getGlobalColNNZ (global_ordinal_t col) const

size_t	getLocalColNNZ (local_ordinal_t col) const

bool	isLocallyIndexed () const

bool	isGloballyIndexed () const

Protected Attributes
const Teuchos::RCP< const Matrix >	mat_

Teuchos::RCP< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	row_map_

Teuchos::RCP< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	col_map_

Teuchos::RCP< const Teuchos::Comm< int > >	comm_

Private Member Functions
void	help_getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, has_special_impl hsi) const

void	help_getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	help_getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

void	do_getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

void	do_getCrs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > colind, const Teuchos::ArrayView< global_size_t > rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, col_access ca) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	do_getCrs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

void	help_getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EDistribution distribution, EStorage_Ordering ordering, has_special_impl hsi) const

void	help_getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	help_getCcs_kokkos_view (KV_S &nzval, KV_GO &colind, KV_GS &rowptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, no_special_impl nsi) const

void	do_getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

void	do_getCcs (const Teuchos::ArrayView< scalar_t > nzval, const Teuchos::ArrayView< global_ordinal_t > rowind, const Teuchos::ArrayView< global_size_t > colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > colmap, EDistribution distribution, EStorage_Ordering ordering, col_access ca) const

template<typename KV_S , typename KV_GO , typename KV_GS >
void	do_getCcs_kokkos_view (KV_S &nzval, KV_GO &rowind, KV_GS &colptr, global_size_t &nnz, const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > > rowmap, EDistribution distribution, EStorage_Ordering ordering, row_access ra) const

Detailed Description

template<class Matrix>
class Amesos2::MatrixAdapter< Matrix >

A Matrix adapter interface for Amesos2.

All Amesos2 solver interfaces are expected to use this matrix adapter interface to make their lives easier. The methods have been chosen to cater to a wide variety of third-party direct sparse solvers' needs.

Member Function Documentation

template<class Matrix>

void Amesos2::MatrixAdapter< Matrix >::getCrs	(	const Teuchos::ArrayView< scalar_t >	nzval,
		const Teuchos::ArrayView< global_ordinal_t >	colind,
		const Teuchos::ArrayView< global_size_t >	rowptr,
		global_size_t &	nnz,
		const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	rowmap,
		EStorage_Ordering	ordering = `ARBITRARY`,
		EDistribution	distribution = `ROOTED`
	)		const

Gets a compressed-row storage summary of this.

Extracts a compressed-row storage format of the matrix and stores the information in the user-supplied containers.

Parameters

[out]	nzval	will hold the values of the nonzero entries of `this`
[out]	colind	will hold the column indices of `this` for each row.
[out]	rowptr	is of size `nrow + 1` and `rowptr[j]` stores the location in `nzval` and `colind` which starts row `j` of `this`. `rowptr[nrow] = nnz`, where `nrow` is the number of rows in this matrix.
[out]	nnz	is the local number of nonzero entries in the representation of this matrix. For example, if this processor has 12 of the 23 nzvals in its rows, then `nnz` will be 12 on exit.
[in]	rowmap	A Tpetra::Map describing the desired distribution of the rows of the CRS representation on the calling processors.
[in]	ordering
[in]	distribution	(optional: default = ROOTED only CONTIGUOUS_AND_ROOTED has an effect behavior)

Exceptions

std::length_error	Thrown if `nzval` or `colind` is not large enough to hold the global number of nonzero values.
std::length_error	Thrown if `rowptr` is not at least `nrow + 1` in size, the required size.
std::runtime_error	Thrown if there is an error while extracting row values from the underlying matrix.

template<class Matrix>

void Amesos2::MatrixAdapter< Matrix >::getCrs	(	const Teuchos::ArrayView< scalar_t >	nzval,
		const Teuchos::ArrayView< global_ordinal_t >	colind,
		const Teuchos::ArrayView< global_size_t >	rowptr,
		global_size_t &	nnz,
		EDistribution	distribution,
		EStorage_Ordering	ordering = `ARBITRARY`
	)		const

Convenience overload for the getCrs function that uses an enum to describe some of the most basic distributions that could be desired.

template<class Matrix>

void Amesos2::MatrixAdapter< Matrix >::getCcs	(	const Teuchos::ArrayView< scalar_t >	nzval,
		const Teuchos::ArrayView< global_ordinal_t >	rowind,
		const Teuchos::ArrayView< global_size_t >	colptr,
		global_size_t &	nnz,
		const Teuchos::Ptr< const Tpetra::Map< local_ordinal_t, global_ordinal_t, node_t > >	colmap,
		EStorage_Ordering	ordering = `ARBITRARY`,
		EDistribution	distribution = `ROOTED`
	)		const

Gets a compressed-column storage summary of this.

Extracts a compressed-column storage format of the matrix and stores the information in the user-supplied containers.

Parameters

[out]	nzval	will hold the values of the nonzero entries of `this`
[out]	rowind	will hold the row indices of `this` for each column.
[out]	colptr	is of size `ncol + 1` and `colptr[j]` stores the location in `nzval` and `rowind` which starts column `j` of `this`. `colptr[ncol] = nnz`, where `ncol` is the number of columns in this matrix.
[out]	nnz	is the number of nonzero entries in this matrix.
[in]	colmap	A Tpetra::Map describing the desired distribution of the columns of the CCS representation on the calling processors.
[in]	ordering
[in]	distribution	(optional: default = ROOTED only CONTIGUOUS_AND_ROOTED has an effect behavior)

Exceptions

std::length_error	Thrown if `nzval` or `rowind` is not large enough to hold the global number of nonzero values.
std::length_error	Thrown if `colptr` is not at least `ncol + 1` in size, the required size.
std::runtime_error	Thrown if there is an error while extracting row values from the underlying matrix.

template<class Matrix>

void Amesos2::MatrixAdapter< Matrix >::getCcs	(	const Teuchos::ArrayView< scalar_t >	nzval,
		const Teuchos::ArrayView< global_ordinal_t >	rowind,
		const Teuchos::ArrayView< global_size_t >	colptr,
		global_size_t &	nnz,
		EDistribution	distribution,
		EStorage_Ordering	ordering = `ARBITRARY`
	)		const

Convenience overload for the getCcs function that uses an enum to describe some of the most basic distributions that could be desired.

template<class Matrix >

void Amesos2::MatrixAdapter< Matrix >::getGlobalRowCopy	(	global_ordinal_t	row,
		const Teuchos::ArrayView< global_ordinal_t > &	indices,
		const Teuchos::ArrayView< scalar_t > &	vals,
		size_t &	nnz
	)		const

protected

Parameters

[out]	row	the global matrix row
[out]	indices	global column indices
[out]	vals	the non-zero values in row `row`
[out]	nnz	the number of nonzeros extracted from row `row`

template<class Matrix >

void Amesos2::MatrixAdapter< Matrix >::getGlobalColCopy	(	global_ordinal_t	col,
		const Teuchos::ArrayView< global_ordinal_t > &	indices,
		const Teuchos::ArrayView< scalar_t > &	vals,
		size_t &	nnz
	)		const

protected

Parameters

[out]	col	the global matrix col
[out]	indices	global column indices
[out]	vals	the non-zero values in row `row`
[out]	nnz	the number of nonzeros extracted from row `row`

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Detailed Description

template<class Matrix> class Amesos2::MatrixAdapter< Matrix >

Member Function Documentation

template<class Matrix>
class Amesos2::MatrixAdapter< Matrix >