Panzer
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#include <Panzer_STK_Interface.hpp>
Classes | |
struct | EdgeBlockException |
struct | ElementBlockException |
struct | FaceBlockException |
class | LocalIdCompare |
struct | SidesetException |
Public Types | |
typedef double | ProcIdData |
typedef stk::mesh::Field< double > | SolutionFieldType |
typedef stk::mesh::Field< double > | VectorFieldType |
typedef stk::mesh::Field < ProcIdData > | ProcIdFieldType |
Public Member Functions | |
STK_Interface () | |
STK_Interface (unsigned dim) | |
STK_Interface (Teuchos::RCP< stk::mesh::MetaData > metaData) | |
void | addElementBlock (const std::string &name, const CellTopologyData *ctData) |
void | addEdgeBlock (const std::string &elemBlockName, const std::string &edgeBlockName, const stk::topology &topology) |
void | addEdgeBlock (const std::string &elemBlockName, const std::string &edgeBlockName, const CellTopologyData *ctData) |
void | addFaceBlock (const std::string &elemBlockName, const std::string &faceBlockName, const stk::topology &topology) |
void | addFaceBlock (const std::string &elemBlockName, const std::string &faceBlockName, const CellTopologyData *ctData) |
void | addSideset (const std::string &name, const CellTopologyData *ctData) |
void | addNodeset (const std::string &name) |
void | addSolutionField (const std::string &fieldName, const std::string &blockId) |
void | addCellField (const std::string &fieldName, const std::string &blockId) |
void | addEdgeField (const std::string &fieldName, const std::string &blockId) |
void | addFaceField (const std::string &fieldName, const std::string &blockId) |
void | addMeshCoordFields (const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix) |
void | addInformationRecords (const std::vector< std::string > &info_records) |
void | initialize (stk::ParallelMachine parallelMach, bool setupIO=true, const bool buildRefinementSupport=false) |
void | instantiateBulkData (stk::ParallelMachine parallelMach) |
void | beginModification () |
void | endModification () |
void | addNode (stk::mesh::EntityId gid, const std::vector< double > &coord) |
void | addElement (const Teuchos::RCP< ElementDescriptor > &ed, stk::mesh::Part *block) |
void | addEdges () |
void | addFaces () |
void | addEntityToSideset (stk::mesh::Entity entity, stk::mesh::Part *sideset) |
void | addEntityToNodeset (stk::mesh::Entity entity, stk::mesh::Part *nodeset) |
void | addEntityToEdgeBlock (stk::mesh::Entity entity, stk::mesh::Part *edgeblock) |
void | addEntitiesToEdgeBlock (std::vector< stk::mesh::Entity > entities, stk::mesh::Part *edgeblock) |
void | addEntityToFaceBlock (stk::mesh::Entity entity, stk::mesh::Part *faceblock) |
void | addEntitiesToFaceBlock (std::vector< stk::mesh::Entity > entities, stk::mesh::Part *faceblock) |
const VectorFieldType & | getCoordinatesField () const |
const VectorFieldType & | getEdgesField () const |
const VectorFieldType & | getFacesField () const |
const double * | getNodeCoordinates (stk::mesh::EntityId nodeId) const |
const double * | getNodeCoordinates (stk::mesh::Entity node) const |
void | getSubcellIndices (unsigned entityRank, stk::mesh::EntityId elementId, std::vector< stk::mesh::EntityId > &subcellIds) const |
void | getMyElements (std::vector< stk::mesh::Entity > &elements) const |
void | getMyElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const |
void | getNeighborElements (std::vector< stk::mesh::Entity > &elements) const |
void | getNeighborElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const |
void | getMyEdges (std::vector< stk::mesh::Entity > &edges) const |
void | getMyEdges (const std::string &edgeBlockName, std::vector< stk::mesh::Entity > &edges) const |
void | getMyEdges (const std::string &edgeBlockName, const std::string &blockName, std::vector< stk::mesh::Entity > &edges) const |
void | getAllEdges (const std::string &edgeBlockName, std::vector< stk::mesh::Entity > &edges) const |
void | getAllEdges (const std::string &edgeBlockName, const std::string &blockName, std::vector< stk::mesh::Entity > &edges) const |
void | getMyFaces (std::vector< stk::mesh::Entity > &faces) const |
void | getMyFaces (const std::string &faceBlockName, std::vector< stk::mesh::Entity > &faces) const |
void | getMyFaces (const std::string &faceBlockName, const std::string &blockName, std::vector< stk::mesh::Entity > &faces) const |
void | getAllFaces (const std::string &faceBlockName, std::vector< stk::mesh::Entity > &faces) const |
void | getAllFaces (const std::string &faceBlockName, const std::string &blockName, std::vector< stk::mesh::Entity > &faces) const |
void | getMySides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const |
void | getMySides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const |
void | getAllSides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const |
void | getAllSides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const |
void | getMyNodes (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &nodes) const |
stk::mesh::Entity | findConnectivityById (stk::mesh::Entity src, stk::mesh::EntityRank tgt_rank, unsigned rel_id) const |
void | writeToExodus (const std::string &filename, const bool append=false) |
Write this mesh and associated fields to the given output file. More... | |
void | setupExodusFile (const std::string &filename, const bool append=false, const bool append_after_restart_time=false, const double restart_time=0.0) |
Set up an output Exodus file for writing results. More... | |
void | writeToExodus (double timestep) |
Write this mesh and associated fields at the given timestep . More... | |
void | addGlobalToExodus (const std::string &key, const int &value) |
Add an int global variable to the information to be written to the Exodus output file. More... | |
void | addGlobalToExodus (const std::string &key, const double &value) |
Add a double global variable to the information to be written to the Exodus output file. More... | |
void | addGlobalToExodus (const std::string &key, const std::vector< int > &value) |
Add a std::vector<int> global variable to the information to be written to the Exodus output file. More... | |
void | addGlobalToExodus (const std::string &key, const std::vector< double > &value) |
Add a std::vector<double> global variable to the information to be written to the Exodus output file. More... | |
Teuchos::RCP< const Teuchos::Comm< int > > | getComm () const |
get the comm associated with this mesh More... | |
Teuchos::RCP< stk::mesh::BulkData > | getBulkData () const |
Teuchos::RCP< stk::mesh::MetaData > | getMetaData () const |
bool | isWritable () const |
bool | isModifiable () const |
unsigned | getDimension () const |
get the dimension More... | |
std::size_t | getNumElementBlocks () const |
get the block count More... | |
void | getElementBlockNames (std::vector< std::string > &names) const |
void | getSidesetNames (std::vector< std::string > &name) const |
void | getNodesetNames (std::vector< std::string > &name) const |
void | getEdgeBlockNames (std::vector< std::string > &names) const |
void | getFaceBlockNames (std::vector< std::string > &names) const |
stk::mesh::Part * | getOwnedPart () const |
Get a pointer to the locally owned part. More... | |
stk::mesh::Part * | getElementBlockPart (const std::string &name) const |
get the block part More... | |
stk::mesh::Part * | getEdgeBlock (const std::string &name) const |
get the block part More... | |
stk::mesh::Part * | getFaceBlock (const std::string &name) const |
get the block part More... | |
std::size_t | getNumSidesets () const |
get the side set count More... | |
stk::mesh::Part * | getSideset (const std::string &name) const |
std::size_t | getNumNodesets () const |
get the side set count More... | |
stk::mesh::Part * | getNodeset (const std::string &name) const |
std::size_t | getEntityCounts (unsigned entityRank) const |
get the global counts for the entity of specified rank More... | |
stk::mesh::EntityId | getMaxEntityId (unsigned entityRank) const |
get max entity ID of type entityRank More... | |
void | getElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements) const |
get a set of elements sharing a single node More... | |
void | getNodeIdsForElement (stk::mesh::Entity element, std::vector< stk::mesh::EntityId > &nodeIds) const |
get a list of node ids for nodes connected to an element More... | |
void | getOwnedElementsSharingNode (stk::mesh::Entity node, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds) const |
void | getOwnedElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds, unsigned int matchType) const |
void | getElementsSharingNodes (const std::vector< stk::mesh::EntityId > nodeId, std::vector< stk::mesh::Entity > &elements) const |
get a set of elements sharing multiple nodes More... | |
void | buildSubcells () |
force the mesh to build subcells: edges and faces More... | |
std::size_t | elementLocalId (stk::mesh::Entity elmt) const |
std::size_t | elementLocalId (stk::mesh::EntityId gid) const |
stk::mesh::EntityId | elementGlobalId (std::size_t lid) const |
stk::mesh::EntityId | elementGlobalId (stk::mesh::Entity elmt) const |
bool | isEdgeLocal (stk::mesh::Entity edge) const |
bool | isEdgeLocal (stk::mesh::EntityId gid) const |
std::size_t | edgeLocalId (stk::mesh::Entity elmt) const |
std::size_t | edgeLocalId (stk::mesh::EntityId gid) const |
stk::mesh::EntityId | edgeGlobalId (std::size_t lid) const |
stk::mesh::EntityId | edgeGlobalId (stk::mesh::Entity edge) const |
bool | isFaceLocal (stk::mesh::Entity face) const |
bool | isFaceLocal (stk::mesh::EntityId gid) const |
std::size_t | faceLocalId (stk::mesh::Entity elmt) const |
std::size_t | faceLocalId (stk::mesh::EntityId gid) const |
stk::mesh::EntityId | faceGlobalId (std::size_t lid) const |
stk::mesh::EntityId | faceGlobalId (stk::mesh::Entity face) const |
unsigned | entityOwnerRank (stk::mesh::Entity entity) const |
bool | isValid (stk::mesh::Entity entity) const |
std::string | containingBlockId (stk::mesh::Entity elmt) const |
stk::mesh::Field< double > * | getSolutionField (const std::string &fieldName, const std::string &blockId) const |
stk::mesh::Field< double > * | getCellField (const std::string &fieldName, const std::string &blockId) const |
stk::mesh::Field< double > * | getEdgeField (const std::string &fieldName, const std::string &blockId) const |
stk::mesh::Field< double > * | getFaceField (const std::string &fieldName, const std::string &blockId) const |
ProcIdFieldType * | getProcessorIdField () |
bool | isInitialized () const |
Has initialize been called on this mesh object? More... | |
Teuchos::RCP< const std::vector< stk::mesh::Entity > > | getElementsOrderedByLID () const |
template<typename ArrayT > | |
void | setSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0) |
template<typename ArrayT > | |
void | getSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, ArrayT &solutionValues) const |
template<typename ArrayT > | |
void | setCellFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0) |
Teuchos::RCP< const std::vector< stk::mesh::Entity > > | getEdgesOrderedByLID () const |
Teuchos::RCP< const std::vector< stk::mesh::Entity > > | getFacesOrderedByLID () const |
template<typename ArrayT > | |
void | setEdgeFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localEdgeIds, const ArrayT &edgeValues, double scaleValue=1.0) |
template<typename ArrayT > | |
void | setFaceFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localFaceIds, const ArrayT &faceValues, double scaleValue=1.0) |
template<typename ArrayT > | |
void | getElementVertices (const std::vector< std::size_t > &localIds, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVerticesNoResize (const std::vector< std::size_t > &localIds, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVerticesNoResize (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementNodes (const std::vector< std::size_t > &localIds, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes (const std::vector< stk::mesh::Entity > &elements, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodesNoResize (const std::vector< std::size_t > &localIds, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodesNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodesNoResize (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodesNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &nodes) const |
stk::mesh::EntityRank | getElementRank () const |
stk::mesh::EntityRank | getSideRank () const |
stk::mesh::EntityRank | getFaceRank () const |
stk::mesh::EntityRank | getEdgeRank () const |
stk::mesh::EntityRank | getNodeRank () const |
void | initializeFromMetaData () |
void | buildLocalElementIDs () |
void | buildLocalEdgeIDs () |
void | buildLocalFaceIDs () |
const std::vector < Teuchos::RCP< const PeriodicBC_MatcherBase > > & | getPeriodicBCVector () const |
std::vector< Teuchos::RCP < const PeriodicBC_MatcherBase > > & | getPeriodicBCVector () |
const bool & | useBoundingBoxSearch () const |
void | setBoundingBoxSearchFlag (const bool &searchFlag) |
void | addPeriodicBC (const Teuchos::RCP< const PeriodicBC_MatcherBase > &bc) |
void | addPeriodicBCs (const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &bc_vec) |
std::pair< Teuchos::RCP < std::vector< std::pair < std::size_t, std::size_t > > >, Teuchos::RCP < std::vector< unsigned int > > > | getPeriodicNodePairing () const |
bool | validBlockId (const std::string &blockId) const |
void | print (std::ostream &os) const |
void | printMetaData (std::ostream &os) const |
Teuchos::RCP< const shards::CellTopology > | getCellTopology (const std::string &eBlock) const |
double | getCurrentStateTime () const |
double | getInitialStateTime () const |
void | setInitialStateTime (double value) |
void | rebalance (const Teuchos::ParameterList ¶ms) |
void | setBlockWeight (const std::string &blockId, double weight) |
void | setUseFieldCoordinates (bool useFieldCoordinates) |
bool | getUseFieldCoordinates () const |
void | setUseLowerCaseForIO (bool useLowerCase) |
bool | getUseLowerCaseForIO () const |
template<typename ArrayT > | |
void | getElementVertices_FromField (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices_FromFieldNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices_FromCoords (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementVertices_FromCoordsNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const |
template<typename ArrayT > | |
void | getElementNodes_FromField (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes_FromFieldNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes_FromCoords (const std::vector< stk::mesh::Entity > &elements, ArrayT &nodes) const |
template<typename ArrayT > | |
void | getElementNodes_FromCoordsNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &nodes) const |
void | refineMesh (const int numberOfLevels, const bool deleteParentElements) |
Static Public Attributes | |
static const std::string | coordsString = "coordinates" |
static const std::string | nodesString = "nodes" |
static const std::string | edgesString = "edges" |
static const std::string | edgeBlockString = "edge_block" |
static const std::string | faceBlockString = "face_block" |
static const std::string | facesString = "faces" |
Protected Member Functions | |
void | buildEntityCounts () |
void | buildMaxEntityIds () |
void | initializeFieldsInSTK (const std::map< std::pair< std::string, std::string >, SolutionFieldType * > &nameToField, bool setupIO) |
Teuchos::RCP< Teuchos::MpiComm < int > > | getSafeCommunicator (stk::ParallelMachine parallelMach) const |
void | applyElementLoadBalanceWeights () |
bool | isMeshCoordField (const std::string &eBlock, const std::string &fieldName, int &axis) const |
template<typename ArrayT > | |
void | setDispFieldData (const std::string &fieldName, const std::string &blockId, int axis, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues) |
Protected Attributes | |
std::vector< Teuchos::RCP < const PeriodicBC_MatcherBase > > | periodicBCs_ |
bool | useBBoxSearch_ = false |
Teuchos::RCP< stk::mesh::MetaData > | metaData_ |
Teuchos::RCP< stk::mesh::BulkData > | bulkData_ |
std::map< std::string, stk::mesh::Part * > | elementBlocks_ |
std::map< std::string, stk::mesh::Part * > | sidesets_ |
std::map< std::string, stk::mesh::Part * > | nodesets_ |
std::map< std::string, stk::mesh::Part * > | edgeBlocks_ |
std::map< std::string, stk::mesh::Part * > | faceBlocks_ |
std::map< std::string, Teuchos::RCP < shards::CellTopology > > | elementBlockCT_ |
stk::mesh::Part * | nodesPart_ |
std::vector< stk::mesh::Part * > | nodesPartVec_ |
stk::mesh::Part * | edgesPart_ |
std::vector< stk::mesh::Part * > | edgesPartVec_ |
stk::mesh::Part * | facesPart_ |
std::vector< stk::mesh::Part * > | facesPartVec_ |
VectorFieldType * | coordinatesField_ |
VectorFieldType * | edgesField_ |
VectorFieldType * | facesField_ |
ProcIdFieldType * | processorIdField_ |
SolutionFieldType * | loadBalField_ |
std::map< std::pair < std::string, std::string > , SolutionFieldType * > | fieldNameToSolution_ |
std::map< std::pair < std::string, std::string > , SolutionFieldType * > | fieldNameToCellField_ |
std::map< std::pair < std::string, std::string > , SolutionFieldType * > | fieldNameToEdgeField_ |
std::map< std::pair < std::string, std::string > , SolutionFieldType * > | fieldNameToFaceField_ |
std::set< std::string > | informationRecords_ |
unsigned | dimension_ |
bool | initialized_ |
std::vector< std::size_t > | entityCounts_ |
std::vector< stk::mesh::EntityId > | maxEntityId_ |
unsigned | procRank_ |
std::size_t | currentLocalId_ |
Teuchos::RCP< Teuchos::MpiComm < int > > | mpiComm_ |
double | initialStateTime_ |
double | currentStateTime_ |
Teuchos::RCP< std::vector < stk::mesh::Entity > > | orderedElementVector_ |
Teuchos::RCP< std::vector < stk::mesh::Entity > > | orderedEdgeVector_ |
Teuchos::RCP< std::vector < stk::mesh::Entity > > | orderedFaceVector_ |
std::map< std::string, double > | blockWeights_ |
std::unordered_map < stk::mesh::EntityId, std::size_t > | localIDHash_ |
std::unordered_map < stk::mesh::EntityId, std::size_t > | localEdgeIDHash_ |
std::unordered_map < stk::mesh::EntityId, std::size_t > | localFaceIDHash_ |
std::map< std::string, std::vector< std::string > > | meshCoordFields_ |
std::map< std::string, std::vector< std::string > > | meshDispFields_ |
bool | useFieldCoordinates_ |
bool | useLowerCase_ |
Definition at line 102 of file Panzer_STK_Interface.hpp.
typedef double panzer_stk::STK_Interface::ProcIdData |
Definition at line 104 of file Panzer_STK_Interface.hpp.
typedef stk::mesh::Field<double> panzer_stk::STK_Interface::SolutionFieldType |
Definition at line 105 of file Panzer_STK_Interface.hpp.
typedef stk::mesh::Field<double> panzer_stk::STK_Interface::VectorFieldType |
Definition at line 106 of file Panzer_STK_Interface.hpp.
typedef stk::mesh::Field<ProcIdData> panzer_stk::STK_Interface::ProcIdFieldType |
Definition at line 107 of file Panzer_STK_Interface.hpp.
panzer_stk::STK_Interface::STK_Interface | ( | ) |
Definition at line 108 of file Panzer_STK_Interface.cpp.
panzer_stk::STK_Interface::STK_Interface | ( | unsigned | dim | ) |
Default constructor
Definition at line 122 of file Panzer_STK_Interface.cpp.
panzer_stk::STK_Interface::STK_Interface | ( | Teuchos::RCP< stk::mesh::MetaData > | metaData | ) |
Definition at line 115 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addElementBlock | ( | const std::string & | name, |
const CellTopologyData * | ctData | ||
) |
Add an element block with a string name
Definition at line 1612 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEdgeBlock | ( | const std::string & | elemBlockName, |
const std::string & | edgeBlockName, | ||
const stk::topology & | topology | ||
) |
Add an edge block with a string name
Definition at line 1643 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEdgeBlock | ( | const std::string & | elemBlockName, |
const std::string & | edgeBlockName, | ||
const CellTopologyData * | ctData | ||
) |
Definition at line 1664 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addFaceBlock | ( | const std::string & | elemBlockName, |
const std::string & | faceBlockName, | ||
const stk::topology & | topology | ||
) |
Add a face block with a string name
Definition at line 1688 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addFaceBlock | ( | const std::string & | elemBlockName, |
const std::string & | faceBlockName, | ||
const CellTopologyData * | ctData | ||
) |
Definition at line 1709 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addSideset | ( | const std::string & | name, |
const CellTopologyData * | ctData | ||
) |
Add a side set with a string name
Definition at line 134 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addNodeset | ( | const std::string & | name | ) |
Add a node set with a string name
Definition at line 146 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addSolutionField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) |
Add a solution field
Definition at line 160 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addCellField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) |
Add a solution field
Definition at line 179 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEdgeField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) |
Add an edge field
Definition at line 199 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addFaceField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) |
Add a face field
Definition at line 220 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addMeshCoordFields | ( | const std::string & | blockId, |
const std::vector< std::string > & | coordField, | ||
const std::string & | dispPrefix | ||
) |
Add a solution field for coordinates with a particular prefix, force it to be outputed as a to be mesh displacement field. This is really only relevant for I/O and how the field is stored internally in the mesh.
[in] | blockId | Element block to use |
[in] | coordPrefix | Prefix for solution coordinate field (assumes using "X","Y","Z" as postfix) |
[in] | dispPrefix | Prefix for displacment (output) field |
Definition at line 241 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addInformationRecords | ( | const std::vector< std::string > & | info_records | ) |
Add a vector of strings to the Information Records block. Each string will be it's own record. The info records will be deduped before they are added to IOSS.
Definition at line 285 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::initialize | ( | stk::ParallelMachine | parallelMach, |
bool | setupIO = true , |
||
const bool | buildRefinementSupport = false |
||
) |
Initialize the mesh with the current dimension This also calls commit on the meta data causing it to be frozen. Information about elements blocks has to be commited before this. If parallel machine has already been specified through instantiateBulkData
that communicator is used. Otherwise a new copy is constructed and will be used through out this mesh object's lifetime.
[in] | parallelMach | Communicator |
[in] | setupIO | If set to true and IOSS is enabled, the output mesh will be initialized. |
[in] | buildRefinementSupport | If true, build percept uniform refinement objects. |
Definition at line 290 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::instantiateBulkData | ( | stk::ParallelMachine | parallelMach | ) |
Build a bulk data object but don't do anything with it. If parallel machine has already been specified through initialize
that communicator is used. Otherwise a new copy is constructed and will be used by default throughout the lifetime of this object.
Definition at line 422 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::beginModification | ( | ) |
Put the bulk data manager in modification mode.
Definition at line 432 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::endModification | ( | ) |
Take the bulk data manager out of modification mode.
Definition at line 440 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addNode | ( | stk::mesh::EntityId | gid, |
const std::vector< double > & | coord | ||
) |
Add a node to the mesh with a specific set of coordinates to the mesh.
coord.size()==getDimension()
isModifiable()==true
Definition at line 496 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addElement | ( | const Teuchos::RCP< ElementDescriptor > & | ed, |
stk::mesh::Part * | block | ||
) |
Definition at line 564 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEdges | ( | ) |
Definition at line 587 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addFaces | ( | ) |
Definition at line 615 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntityToSideset | ( | stk::mesh::Entity | entity, |
stk::mesh::Part * | sideset | ||
) |
Adds an entity to a specified side set.
Definition at line 514 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntityToNodeset | ( | stk::mesh::Entity | entity, |
stk::mesh::Part * | nodeset | ||
) |
Adds an entity to a specified node set.
Definition at line 522 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntityToEdgeBlock | ( | stk::mesh::Entity | entity, |
stk::mesh::Part * | edgeblock | ||
) |
Adds an entity to a specified edge block.
Definition at line 530 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntitiesToEdgeBlock | ( | std::vector< stk::mesh::Entity > | entities, |
stk::mesh::Part * | edgeblock | ||
) |
Adds a vector of entities to a specified edge block.
Definition at line 537 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntityToFaceBlock | ( | stk::mesh::Entity | entity, |
stk::mesh::Part * | faceblock | ||
) |
Adds an entity to a specified face block.
Definition at line 547 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addEntitiesToFaceBlock | ( | std::vector< stk::mesh::Entity > | entities, |
stk::mesh::Part * | faceblock | ||
) |
Adds a vector of entities to a specified face block.
Definition at line 554 of file Panzer_STK_Interface.cpp.
|
inline |
Grab the coordinates field
Definition at line 272 of file Panzer_STK_Interface.hpp.
|
inline |
Grab the edges field
Definition at line 277 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 280 of file Panzer_STK_Interface.hpp.
const double * panzer_stk::STK_Interface::getNodeCoordinates | ( | stk::mesh::EntityId | nodeId | ) | const |
Look up a global node and get the coordinate.
Definition at line 1116 of file Panzer_STK_Interface.cpp.
const double * panzer_stk::STK_Interface::getNodeCoordinates | ( | stk::mesh::Entity | node | ) | const |
Look up a global node and get the coordinate.
Definition at line 1122 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getSubcellIndices | ( | unsigned | entityRank, |
stk::mesh::EntityId | elementId, | ||
std::vector< stk::mesh::EntityId > & | subcellIds | ||
) | const |
Get subcell global IDs
Definition at line 1127 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyElements | ( | std::vector< stk::mesh::Entity > & | elements | ) | const |
Get a vector of elements owned by this processor
Definition at line 1148 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyElements | ( | const std::string & | blockID, |
std::vector< stk::mesh::Entity > & | elements | ||
) | const |
Get a vector of elements owned by this processor on a particular block ID
Definition at line 1158 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getNeighborElements | ( | std::vector< stk::mesh::Entity > & | elements | ) | const |
Get a vector of elements that share an edge/face with an owned element. Note that these elements are not owned.
Definition at line 1173 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getNeighborElements | ( | const std::string & | blockID, |
std::vector< stk::mesh::Entity > & | elements | ||
) | const |
Get a vector of elements not owned by this processor but in a particular block
Definition at line 1183 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyEdges | ( | std::vector< stk::mesh::Entity > & | edges | ) | const |
Get a vector of edges owned by this processor
Definition at line 1197 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyEdges | ( | const std::string & | edgeBlockName, |
std::vector< stk::mesh::Entity > & | edges | ||
) | const |
Get Entities corresponding to the edge block requested. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | edgeBlockName | Name of edge block |
[in,out] | edges | Vector of entities containing the requested edges. |
Definition at line 1206 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyEdges | ( | const std::string & | edgeBlockName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | edges | ||
) | const |
Get Entities corresponding to the locally owned part of the edge block requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | edgeBlockName | Name of edge block |
[in] | blockName | Name of block |
[in,out] | edges | Vector of entities containing the requested edges. |
Definition at line 1219 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllEdges | ( | const std::string & | edgeBlockName, |
std::vector< stk::mesh::Entity > & | edges | ||
) | const |
Get Entities corresponding to the locally owned part of the edge block requested. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | edgeBlockName | Name of edge block |
[in,out] | edges | Vector of entities containing the requested edges. |
Definition at line 1236 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllEdges | ( | const std::string & | edgeBlockName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | edges | ||
) | const |
Get Entities corresponding to the edge block requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | edgeBlockName | Name of edge block |
[in] | blockName | Name of block |
[in,out] | edges | Vector of entities containing the requested edges. |
Definition at line 1248 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyFaces | ( | std::vector< stk::mesh::Entity > & | faces | ) | const |
Get a vector of faces owned by this processor
Definition at line 1265 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyFaces | ( | const std::string & | faceBlockName, |
std::vector< stk::mesh::Entity > & | faces | ||
) | const |
Get Entities corresponding to the face block requested. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | faceBlockName | Name of face block |
[in,out] | faces | Vector of entities containing the requested faces. |
Definition at line 1275 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyFaces | ( | const std::string & | faceBlockName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | faces | ||
) | const |
Get Entities corresponding to the locally owned part of the face block requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | faceBlockName | Name of face block |
[in] | blockName | Name of block |
[in,out] | faces | Vector of entities containing the requested faces. |
Definition at line 1288 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllFaces | ( | const std::string & | faceBlockName, |
std::vector< stk::mesh::Entity > & | faces | ||
) | const |
Get Entities corresponding to the locally owned part of the face block requested. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | faceBlockName | Name of face block |
[in,out] | faces | Vector of entities containing the requested faces. |
Definition at line 1305 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllFaces | ( | const std::string & | faceBlockName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | faces | ||
) | const |
Get Entities corresponding to the face block requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower than getDimension()
.
[in] | faceBlockName | Name of face block |
[in] | blockName | Name of block |
[in,out] | faces | Vector of entities containing the requested faces. |
Definition at line 1317 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMySides | ( | const std::string & | sideName, |
std::vector< stk::mesh::Entity > & | sides | ||
) | const |
Get Entities corresponding to the side set requested. The Entites in the vector should be a dimension lower then getDimension()
.
[in] | sideName | Name of side set |
[in,out] | sides | Vector of entities containing the requested sides. |
Definition at line 1334 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMySides | ( | const std::string & | sideName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | sides | ||
) | const |
Get Entities corresponding to the locally owned part of the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension()
.
[in] | sideName | Name of side set |
[in] | blockName | Name of block |
[in,out] | sides | Vector of entities containing the requested sides. |
Definition at line 1347 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllSides | ( | const std::string & | sideName, |
std::vector< stk::mesh::Entity > & | sides | ||
) | const |
Get Entities corresponding to the locally owned part of the side set requested. The Entites in the vector should be a dimension lower then getDimension()
.
[in] | sideName | Name of side set |
[in,out] | sides | Vector of entities containing the requested sides. |
Definition at line 1364 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getAllSides | ( | const std::string & | sideName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | sides | ||
) | const |
Get Entities corresponding to the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension()
.
[in] | sideName | Name of side set |
[in] | blockName | Name of block |
[in,out] | sides | Vector of entities containing the requested sides. |
Definition at line 1376 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getMyNodes | ( | const std::string & | sideName, |
const std::string & | blockName, | ||
std::vector< stk::mesh::Entity > & | nodes | ||
) | const |
Get Entities corresponding to the node set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be of dimension 0
.
[in] | sideName | Name of side set |
[in] | blockName | Name of block |
[in,out] | nodes | Vector of entities containing the requested nodes. |
Definition at line 1393 of file Panzer_STK_Interface.cpp.
stk::mesh::Entity panzer_stk::STK_Interface::findConnectivityById | ( | stk::mesh::Entity | src, |
stk::mesh::EntityRank | tgt_rank, | ||
unsigned | rel_id | ||
) | const |
Searches for connected entity by rank and relation id. Returns invalid entity on failure.
[in] | src | The handle to the source entity (the 'from' part of the relation) |
[in] | tgt_rank | The entity rank of relations to search |
[in] | rel_id | The id of the relation to search for |
Definition at line 645 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::writeToExodus | ( | const std::string & | filename, |
const bool | append = false |
||
) |
Write this mesh and associated fields to the given output file.
[in] | filename | The name of the output Exodus file. |
[in] | append | If set to true, the output will be appended to the output Exodus file. If set to false, output file will be overwritten. Default is false. |
Definition at line 666 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::setupExodusFile | ( | const std::string & | filename, |
const bool | append = false , |
||
const bool | append_after_restart_time = false , |
||
const double | restart_time = 0.0 |
||
) |
Set up an output Exodus file for writing results.
Create an output mesh associated with the given filename
and add the fields to it.
writeToExodus(double timestep)
.[in] | filename | The name of the output Exodus file. |
[in] | append | If set to true, the output will be appended to the output Exodus file. If set to false, output file will be overwritten. Default is false. |
[in] | append_after_restart_time | If set to true, instead of appending to the end of the Exodus file, this option will append new writes after a specified time and overwrite subsequent time steps that were in the file. Allows users to restart anywhere in the exodus file and write consistently. If set to false, the next write will append to the end of the file. Default is false. |
[in] | restart_time | If append_after_restart_time is true, this is the time value to append after. Otherwise this value is ignored. |
<tt>std::logic_error</tt> | If the STK_Interface does not yet have a MPI communicator. |
Definition at line 680 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::writeToExodus | ( | double | timestep | ) |
Write this mesh and associated fields at the given timestep
.
Write this mesh and the current state of the associated fields for time = timestep
to the output Exodus file created via setupExodusFile()
.
setupExodusFile(const std::string& filename)
must be called before any invocations of this routine.[in] | timestep | The simulation time at which you're writing the results. |
Definition at line 740 of file Panzer_STK_Interface.cpp.
Add an int
global variable to the information to be written to the Exodus output file.
This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string
key.
writeToExodus()
is called.[in] | key | The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to addGlobalToExodus() . Repeated calls with identical keys will result in the value associated with the key simply being overwritten. |
[in] | value | The value of the global variable you'll be adding. |
Definition at line 891 of file Panzer_STK_Interface.cpp.
Add a double
global variable to the information to be written to the Exodus output file.
This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string
key.
writeToExodus()
is called.[in] | key | The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to addGlobalToExodus() . Repeated calls with identical keys will result in the value associated with the key simply being overwritten. |
[in] | value | The value of the global variable you'll be adding. |
Definition at line 905 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addGlobalToExodus | ( | const std::string & | key, |
const std::vector< int > & | value | ||
) |
Add a std::vector<int>
global variable to the information to be written to the Exodus output file.
This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string
key.
writeToExodus()
is called.[in] | key | The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to addGlobalToExodus() . Repeated calls with identical keys will result in the value associated with the key simply being overwritten. |
[in] | value | The value of the global variable you'll be adding. |
Definition at line 919 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::addGlobalToExodus | ( | const std::string & | key, |
const std::vector< double > & | value | ||
) |
Add a std::vector<double>
global variable to the information to be written to the Exodus output file.
This allows you to add any arbitrary global data (that is, data not associated with nodes, elements, etc.) to the Exodus output file tagged with a string
key.
writeToExodus()
is called.[in] | key | The name of the global variable you'll be adding. Note that keys should be unique if you're adding multiple global variables with repeated calls to addGlobalToExodus() . Repeated calls with identical keys will result in the value associated with the key simply being overwritten. |
[in] | value | The value of the global variable you'll be adding. |
Definition at line 934 of file Panzer_STK_Interface.cpp.
Teuchos::RCP< const Teuchos::Comm< int > > panzer_stk::STK_Interface::getComm | ( | ) | const |
get the comm associated with this mesh
Definition at line 2063 of file Panzer_STK_Interface.cpp.
|
inline |
Definition at line 612 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 613 of file Panzer_STK_Interface.hpp.
bool panzer_stk::STK_Interface::isWritable | ( | ) | const |
Definition at line 942 of file Panzer_STK_Interface.cpp.
|
inline |
Definition at line 623 of file Panzer_STK_Interface.hpp.
|
inline |
get the dimension
Definition at line 628 of file Panzer_STK_Interface.hpp.
|
inline |
get the block count
Definition at line 632 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementBlockNames | ( | std::vector< std::string > & | names | ) | const |
Get a vector containing the names of the element blocks. This function always returns the current set of element blocks in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize
.
[in,out] | names | Vector of names of the element blocks. |
Definition at line 1410 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getSidesetNames | ( | std::vector< std::string > & | name | ) | const |
Get a vector containing the names of the side sets. This function always returns the current set of side sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize
.
[in,out] | names | Vector of names of the side sets |
Definition at line 1422 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getNodesetNames | ( | std::vector< std::string > & | name | ) | const |
Get a vector containing the names of the node sets. This function always returns the current set of node sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize
.
[in,out] | names | Vector of names of the node sets. |
Definition at line 1434 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getEdgeBlockNames | ( | std::vector< std::string > & | names | ) | const |
Get a vector containing the names of the edge blocks. This function always returns the current set of edge blocks in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize
.
[in,out] | names | Vector of names of the edge blocks. |
Definition at line 1444 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getFaceBlockNames | ( | std::vector< std::string > & | names | ) | const |
Get a vector containing the names of the face blocks. This function always returns the current set of face blocks in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize
.
[in,out] | names | Vector of names of the face blocks. |
Definition at line 1454 of file Panzer_STK_Interface.cpp.
|
inline |
Get a pointer to the locally owned part.
Definition at line 681 of file Panzer_STK_Interface.hpp.
|
inline |
get the block part
Definition at line 685 of file Panzer_STK_Interface.hpp.
|
inline |
get the block part
Definition at line 693 of file Panzer_STK_Interface.hpp.
|
inline |
get the block part
Definition at line 701 of file Panzer_STK_Interface.hpp.
|
inline |
get the side set count
Definition at line 709 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 712 of file Panzer_STK_Interface.hpp.
|
inline |
get the side set count
Definition at line 719 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 722 of file Panzer_STK_Interface.hpp.
std::size_t panzer_stk::STK_Interface::getEntityCounts | ( | unsigned | entityRank | ) | const |
get the global counts for the entity of specified rank
Definition at line 1087 of file Panzer_STK_Interface.cpp.
stk::mesh::EntityId panzer_stk::STK_Interface::getMaxEntityId | ( | unsigned | entityRank | ) | const |
get max entity ID of type entityRank
Definition at line 1095 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getElementsSharingNode | ( | stk::mesh::EntityId | nodeId, |
std::vector< stk::mesh::Entity > & | elements | ||
) | const |
get a set of elements sharing a single node
Definition at line 951 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getNodeIdsForElement | ( | stk::mesh::Entity | element, |
std::vector< stk::mesh::EntityId > & | nodeIds | ||
) | const |
get a list of node ids for nodes connected to an element
Definition at line 1034 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getOwnedElementsSharingNode | ( | stk::mesh::Entity | node, |
std::vector< stk::mesh::Entity > & | elements, | ||
std::vector< int > & | relIds | ||
) | const |
Get set of element sharing a single node and its local node id.
Definition at line 964 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getOwnedElementsSharingNode | ( | stk::mesh::EntityId | nodeId, |
std::vector< stk::mesh::Entity > & | elements, | ||
std::vector< int > & | relIds, | ||
unsigned int | matchType | ||
) | const |
Get set of element sharing a single node and its local node id.
Definition at line 984 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::getElementsSharingNodes | ( | const std::vector< stk::mesh::EntityId > | nodeId, |
std::vector< stk::mesh::Entity > & | elements | ||
) | const |
get a set of elements sharing multiple nodes
Definition at line 1002 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::buildSubcells | ( | ) |
force the mesh to build subcells: edges and faces
Definition at line 1103 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::elementLocalId | ( | stk::mesh::Entity | elmt | ) | const |
Get an elements local index
Definition at line 1464 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::elementLocalId | ( | stk::mesh::EntityId | gid | ) | const |
Get an elements local index
Definition at line 1471 of file Panzer_STK_Interface.cpp.
|
inline |
Get an elements global index
Definition at line 770 of file Panzer_STK_Interface.hpp.
|
inline |
Get an elements global index
Definition at line 775 of file Panzer_STK_Interface.hpp.
bool panzer_stk::STK_Interface::isEdgeLocal | ( | stk::mesh::Entity | edge | ) | const |
Is an edge local to this processor?
Definition at line 1482 of file Panzer_STK_Interface.cpp.
bool panzer_stk::STK_Interface::isEdgeLocal | ( | stk::mesh::EntityId | gid | ) | const |
Is an edge local to this processor?
Definition at line 1487 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::edgeLocalId | ( | stk::mesh::Entity | elmt | ) | const |
Get an edge's local index
Definition at line 1496 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::edgeLocalId | ( | stk::mesh::EntityId | gid | ) | const |
Get an edge's local index
Definition at line 1501 of file Panzer_STK_Interface.cpp.
|
inline |
Get an edge's global index
Definition at line 796 of file Panzer_STK_Interface.hpp.
|
inline |
Get an edge's global index
Definition at line 801 of file Panzer_STK_Interface.hpp.
bool panzer_stk::STK_Interface::isFaceLocal | ( | stk::mesh::Entity | face | ) | const |
Is a face local to this processor?
Definition at line 1508 of file Panzer_STK_Interface.cpp.
bool panzer_stk::STK_Interface::isFaceLocal | ( | stk::mesh::EntityId | gid | ) | const |
Is a face local to this processor?
Definition at line 1513 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::faceLocalId | ( | stk::mesh::Entity | elmt | ) | const |
Get a face's local index
Definition at line 1522 of file Panzer_STK_Interface.cpp.
std::size_t panzer_stk::STK_Interface::faceLocalId | ( | stk::mesh::EntityId | gid | ) | const |
Get a face's local index
Definition at line 1527 of file Panzer_STK_Interface.cpp.
|
inline |
Get a face's global index
Definition at line 822 of file Panzer_STK_Interface.hpp.
|
inline |
Get a face's global index
Definition at line 827 of file Panzer_STK_Interface.hpp.
|
inline |
Get an Entity's parallel owner (process rank)
Definition at line 832 of file Panzer_STK_Interface.hpp.
|
inline |
Check if entity handle is valid
Definition at line 837 of file Panzer_STK_Interface.hpp.
std::string panzer_stk::STK_Interface::containingBlockId | ( | stk::mesh::Entity | elmt | ) | const |
Get the containing block ID of this element.
Definition at line 1535 of file Panzer_STK_Interface.cpp.
stk::mesh::Field< double > * panzer_stk::STK_Interface::getSolutionField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) | const |
Get the stk mesh field pointer associated with a particular solution value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.
Definition at line 1543 of file Panzer_STK_Interface.cpp.
stk::mesh::Field< double > * panzer_stk::STK_Interface::getCellField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) | const |
Get the stk mesh field pointer associated with a particular value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.
Definition at line 1557 of file Panzer_STK_Interface.cpp.
stk::mesh::Field< double > * panzer_stk::STK_Interface::getEdgeField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) | const |
Get the stk mesh field pointer associated with a particular value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.
Definition at line 1571 of file Panzer_STK_Interface.cpp.
stk::mesh::Field< double > * panzer_stk::STK_Interface::getFaceField | ( | const std::string & | fieldName, |
const std::string & | blockId | ||
) | const |
Get the stk mesh field pointer associated with a particular value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.
Definition at line 1585 of file Panzer_STK_Interface.cpp.
|
inline |
Definition at line 872 of file Panzer_STK_Interface.hpp.
|
inline |
Has initialize
been called on this mesh object?
Definition at line 875 of file Panzer_STK_Interface.hpp.
Teuchos::RCP< const std::vector< stk::mesh::Entity > > panzer_stk::STK_Interface::getElementsOrderedByLID | ( | ) | const |
Get Vector of element entities ordered by their LID, returns an RCP so that it is easily stored by the caller.
Definition at line 1599 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::setSolutionFieldData | ( | const std::string & | fieldName, |
const std::string & | blockId, | ||
const std::vector< std::size_t > & | localElementIds, | ||
const ArrayT & | solutionValues, | ||
double | scaleValue = 1.0 |
||
) |
Writes a particular field to an array. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | localElementIds | Local element IDs for this set of solution values |
[in] | solutionValues | An two dimensional array object sized by (Cells,Basis Count) |
Definition at line 1582 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getSolutionFieldData | ( | const std::string & | fieldName, |
const std::string & | blockId, | ||
const std::vector< std::size_t > & | localElementIds, | ||
ArrayT & | solutionValues | ||
) | const |
Reads a particular field into an array. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | localElementIds | Local element IDs for this set of solution values |
[in] | solutionValues | An two dimensional array object sized by (Cells,Basis Count) |
Definition at line 1644 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::setCellFieldData | ( | const std::string & | fieldName, |
const std::string & | blockId, | ||
const std::vector< std::size_t > & | localElementIds, | ||
const ArrayT & | solutionValues, | ||
double | scaleValue = 1.0 |
||
) |
Writes a particular field to a cell array. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | localElementIds | Local element IDs for this set of solution values |
[in] | solutionValues | A one dimensional array object sized by (Cells) |
Definition at line 1674 of file Panzer_STK_Interface.hpp.
Teuchos::RCP< const std::vector< stk::mesh::Entity > > panzer_stk::STK_Interface::getEdgesOrderedByLID | ( | ) | const |
Get Vector of edge entities ordered by their LID, returns an RCP so that it is easily stored by the caller.
Definition at line 1630 of file Panzer_STK_Interface.cpp.
Teuchos::RCP< const std::vector< stk::mesh::Entity > > panzer_stk::STK_Interface::getFacesOrderedByLID | ( | ) | const |
Get Vector of face entities ordered by their LID, returns an RCP so that it is easily stored by the caller.
Definition at line 1675 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::setEdgeFieldData | ( | const std::string & | fieldName, |
const std::string & | blockId, | ||
const std::vector< std::size_t > & | localEdgeIds, | ||
const ArrayT & | edgeValues, | ||
double | scaleValue = 1.0 |
||
) |
Writes a particular field to an edge array. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | localEdgeIds | Local edge IDs for this set of solution values |
[in] | edgeValues | A one dimensional array object sized by (edges) |
Definition at line 1695 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::setFaceFieldData | ( | const std::string & | fieldName, |
const std::string & | blockId, | ||
const std::vector< std::size_t > & | localFaceIds, | ||
const ArrayT & | faceValues, | ||
double | scaleValue = 1.0 |
||
) |
Writes a particular field to a face array. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | localFaceIds | Local face IDs for this set of solution values |
[in] | faceValues | A one dimensional array object sized by (faces) |
Definition at line 1716 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices | ( | const std::vector< std::size_t > & | localIds, |
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry.
[in] | localIds | Element local IDs to construct vertices |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1739 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry.
[in] | elements | Element entities to construct vertices |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1763 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices | ( | const std::vector< std::size_t > & | localIds, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry.
[in] | localIds | Element local IDs to construct vertices |
[in] | eBlock | Element block the elements are in |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1787 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry.
[in] | elements | Element entities to construct vertices |
[in] | eBlock | Element block the elements are in |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1776 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVerticesNoResize | ( | const std::vector< std::size_t > & | localIds, |
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.
[in] | localIds | Element local IDs to construct vertices |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1805 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVerticesNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.
[in] | elements | Element entities to construct vertices |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1829 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVerticesNoResize | ( | const std::vector< std::size_t > & | localIds, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.
[in] | localIds | Element local IDs to construct vertices |
[in] | eBlock | Element block the elements are in |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1853 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVerticesNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.
[in] | elements | Element entities to construct vertices |
[in] | eBlock | Element block the elements are in |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1842 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes | ( | const std::vector< std::size_t > & | localIds, |
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry.
[in] | localIds | Element local IDs to construct nodes |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2068 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry.
[in] | elements | Element entities to construct nodes |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2092 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes | ( | const std::vector< std::size_t > & | localIds, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry.
[in] | localIds | Element local IDs to construct nodes |
[in] | eBlock | Element block the elements are in |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2116 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry.
[in] | elements | Element entities to construct nodes |
[in] | eBlock | Element block the elements are in |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2105 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodesNoResize | ( | const std::vector< std::size_t > & | localIds, |
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry. The node array will not be resized.
[in] | localIds | Element local IDs to construct nodes |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2134 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodesNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry. The node array will not be resized.
[in] | elements | Element entities to construct nodes |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2158 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodesNoResize | ( | const std::vector< std::size_t > & | localIds, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry. The node array will not be resized.
[in] | localIds | Element local IDs to construct nodes |
[in] | eBlock | Element block the elements are in |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2182 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodesNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry. The node array will not be resized.
[in] | elements | Element entities to construct nodes |
[in] | eBlock | Element block the elements are in |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2171 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 1174 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 1175 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 1176 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 1177 of file Panzer_STK_Interface.hpp.
|
inline |
Definition at line 1178 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::initializeFromMetaData | ( | ) |
Build fields and parts from the meta data
Definition at line 1720 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::buildLocalElementIDs | ( | ) |
Setup local element IDs
Definition at line 1744 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::buildLocalEdgeIDs | ( | ) |
Setup local edge IDs
Definition at line 1808 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::buildLocalFaceIDs | ( | ) |
Setup local face IDs
Definition at line 1828 of file Panzer_STK_Interface.cpp.
|
inline |
Return a vector containing all the periodic boundary conditions.
Definition at line 1199 of file Panzer_STK_Interface.hpp.
|
inline |
Return a vector containing all the periodic boundary conditions.
Definition at line 1205 of file Panzer_STK_Interface.hpp.
|
inline |
Return a flag indicating if the bounding box search is used when matching periodic Ids.
Definition at line 1210 of file Panzer_STK_Interface.hpp.
|
inline |
Set the periodic search flag. Indicates if the bounding box search is used
Definition at line 1214 of file Panzer_STK_Interface.hpp.
|
inline |
Add a periodic boundary condition.
Definition at line 1222 of file Panzer_STK_Interface.hpp.
|
inline |
Add a set of periodic boundary conditions.
Definition at line 1230 of file Panzer_STK_Interface.hpp.
std::pair< Teuchos::RCP< std::vector< std::pair< std::size_t, std::size_t > > >, Teuchos::RCP< std::vector< unsigned int > > > panzer_stk::STK_Interface::getPeriodicNodePairing | ( | ) | const |
Pairs DOFs on periodic entities
Definition at line 1871 of file Panzer_STK_Interface.cpp.
bool panzer_stk::STK_Interface::validBlockId | ( | const std::string & | blockId | ) | const |
check for a valid block id
Definition at line 1910 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::print | ( | std::ostream & | os | ) | const |
Print a brief description of the STK mesh to a stream.
Definition at line 1917 of file Panzer_STK_Interface.cpp.
void panzer_stk::STK_Interface::printMetaData | ( | std::ostream & | os | ) | const |
Print a brief description of the STK mesh to a stream.
Definition at line 1967 of file Panzer_STK_Interface.cpp.
Teuchos::RCP< const shards::CellTopology > panzer_stk::STK_Interface::getCellTopology | ( | const std::string & | eBlock | ) | const |
Get the cell topology from the element block.
Definition at line 2007 of file Panzer_STK_Interface.cpp.
|
inline |
Get the value of the time-stamp the last time this object was written to Exodus (default 0.0)
Definition at line 1258 of file Panzer_STK_Interface.hpp.
|
inline |
Get the value of the time-stamp when this object was created (default 0.0) or when setInitialStateTime was called.
Definition at line 1265 of file Panzer_STK_Interface.hpp.
|
inline |
Set the value of the initial time-stamp
Definition at line 1271 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::rebalance | ( | const Teuchos::ParameterList & | params | ) |
Rebalance using zoltan. Note that this will void the local element ids.
Definition at line 2034 of file Panzer_STK_Interface.cpp.
|
inline |
Set the weight for a particular element block. Larger means more costly to assemble and evaluate.
Definition at line 1280 of file Panzer_STK_Interface.hpp.
|
inline |
When coordinates are returned in the getElementNodes method, extract coordinates using a specified field (not the intrinsic coordinates) where available (where unavailable the intrinsic coordinates are used. Note that this does not change the behavior of getNodeCoordinates. This is set to false by default.
Definition at line 1289 of file Panzer_STK_Interface.hpp.
|
inline |
Return the use field coordinates flag
Definition at line 1293 of file Panzer_STK_Interface.hpp.
|
inline |
Use lower case (or not) for I/O
Definition at line 1297 of file Panzer_STK_Interface.hpp.
|
inline |
Use lower case (or not) for I/O
Definition at line 1301 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices_FromField | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry, note that a coordinate field will be used (if not is available an exception will be thrown).
[in] | elements | Element entities to construct vertices |
[in] | eBlock | Element block the elements are in |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1968 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices_FromFieldNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | vertices | ||
) | const |
Definition at line 2021 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices_FromCoords | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | vertices | ||
) | const |
Get vertices associated with a number of elements of the same geometry. This access the true mesh coordinates array.
[in] | elements | Element entities to construct vertices |
[out] | vertices | Output array that will be sized (localIds.size() ,#Vertices,#Dim) |
localIds
is 0, the function will silently return Definition at line 1871 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementVertices_FromCoordsNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | vertices | ||
) | const |
Definition at line 1922 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes_FromField | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry, note that a coordinate field will be used (if not is available an exception will be thrown).
[in] | elements | Element entities to construct nodes |
[in] | eBlock | Element block the elements are in |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2297 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes_FromFieldNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
const std::string & | eBlock, | ||
ArrayT & | nodes | ||
) | const |
Definition at line 2351 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes_FromCoords | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | nodes | ||
) | const |
Get nodes associated with a number of elements of the same geometry. This access the true mesh coordinates array.
[in] | elements | Element entities to construct nodes |
[out] | nodes | Output array that will be sized (localIds.size() ,#Nodes,#Dim) |
localIds
is 0, the function will silently return Definition at line 2200 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::getElementNodes_FromCoordsNoResize | ( | const std::vector< stk::mesh::Entity > & | elements, |
ArrayT & | nodes | ||
) | const |
Definition at line 2251 of file Panzer_STK_Interface.hpp.
void panzer_stk::STK_Interface::refineMesh | ( | const int | numberOfLevels, |
const bool | deleteParentElements | ||
) |
Uniformly refine the mesh using Percept
[in] | numberOfLevels | Number of uniform refinement levels to apply. Must be >=1. |
[in] | deleteParentElements | If true, deletes the parent elements from the mesh to save memory. |
Definition at line 2069 of file Panzer_STK_Interface.cpp.
|
protected |
Compute global entity counts.
Definition at line 1045 of file Panzer_STK_Interface.cpp.
|
protected |
Compute global entity counts.
Definition at line 1051 of file Panzer_STK_Interface.cpp.
|
protected |
Initialize STK fields using a map (allocate space for storage and writing) to a specific entity rank.
Definition at line 398 of file Panzer_STK_Interface.cpp.
|
protected |
Build a safely handled Teuchos MPI communicator from a parallel machine. This object asserts ownership of the communicator so that we can gurantee existence so the outer user can do whatever they'd like with the original.
Definition at line 2023 of file Panzer_STK_Interface.cpp.
|
protected |
In a pure local operation apply the user specified block weights for each element block to the field that defines the load balance weighting. This uses the blockWeights_ member to determine the user value that has been set for a particular element block.
Definition at line 1787 of file Panzer_STK_Interface.cpp.
|
protected |
Determine if a particular field in an element block is a displacement field. Return the displacement field name in the requested argument if so.
Definition at line 1849 of file Panzer_STK_Interface.cpp.
|
protected |
Writes a particular field to an array as a coordinate diplacement. Notice this is setup to work with the worksets associated with Panzer.
[in] | fieldName | Name of field to be filled |
[in] | blockId | Name of block this set of elements belongs to |
[in] | dimension | What coordinate axis to write to |
[in] | localElementIds | Local element IDs for this set of solution values |
[in] | solutionValues | An two dimensional array object sized by (Cells,Basis Count) |
Definition at line 1615 of file Panzer_STK_Interface.hpp.
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static |
Definition at line 1380 of file Panzer_STK_Interface.hpp.
|
static |
Definition at line 1381 of file Panzer_STK_Interface.hpp.
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static |
Definition at line 1382 of file Panzer_STK_Interface.hpp.
|
static |
Definition at line 1383 of file Panzer_STK_Interface.hpp.
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Definition at line 1384 of file Panzer_STK_Interface.hpp.
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Definition at line 1385 of file Panzer_STK_Interface.hpp.
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Definition at line 1440 of file Panzer_STK_Interface.hpp.
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Definition at line 1441 of file Panzer_STK_Interface.hpp.
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Definition at line 1443 of file Panzer_STK_Interface.hpp.
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Definition at line 1444 of file Panzer_STK_Interface.hpp.
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Definition at line 1450 of file Panzer_STK_Interface.hpp.
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Definition at line 1451 of file Panzer_STK_Interface.hpp.
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Definition at line 1452 of file Panzer_STK_Interface.hpp.
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Definition at line 1453 of file Panzer_STK_Interface.hpp.
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Definition at line 1454 of file Panzer_STK_Interface.hpp.
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Definition at line 1456 of file Panzer_STK_Interface.hpp.
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Definition at line 1459 of file Panzer_STK_Interface.hpp.
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Definition at line 1460 of file Panzer_STK_Interface.hpp.
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Definition at line 1461 of file Panzer_STK_Interface.hpp.
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Definition at line 1462 of file Panzer_STK_Interface.hpp.
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Definition at line 1463 of file Panzer_STK_Interface.hpp.
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Definition at line 1464 of file Panzer_STK_Interface.hpp.
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Definition at line 1466 of file Panzer_STK_Interface.hpp.
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Definition at line 1467 of file Panzer_STK_Interface.hpp.
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Definition at line 1468 of file Panzer_STK_Interface.hpp.
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Definition at line 1469 of file Panzer_STK_Interface.hpp.
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Definition at line 1470 of file Panzer_STK_Interface.hpp.
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Definition at line 1473 of file Panzer_STK_Interface.hpp.
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Definition at line 1474 of file Panzer_STK_Interface.hpp.
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Definition at line 1475 of file Panzer_STK_Interface.hpp.
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Definition at line 1476 of file Panzer_STK_Interface.hpp.
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Definition at line 1479 of file Panzer_STK_Interface.hpp.
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Definition at line 1481 of file Panzer_STK_Interface.hpp.
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Definition at line 1483 of file Panzer_STK_Interface.hpp.
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Definition at line 1486 of file Panzer_STK_Interface.hpp.
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Definition at line 1489 of file Panzer_STK_Interface.hpp.
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Definition at line 1491 of file Panzer_STK_Interface.hpp.
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Definition at line 1492 of file Panzer_STK_Interface.hpp.
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Definition at line 1494 of file Panzer_STK_Interface.hpp.
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Definition at line 1496 of file Panzer_STK_Interface.hpp.
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Definition at line 1497 of file Panzer_STK_Interface.hpp.
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Definition at line 1541 of file Panzer_STK_Interface.hpp.
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Definition at line 1544 of file Panzer_STK_Interface.hpp.
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Definition at line 1547 of file Panzer_STK_Interface.hpp.
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Definition at line 1550 of file Panzer_STK_Interface.hpp.
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Definition at line 1552 of file Panzer_STK_Interface.hpp.
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Definition at line 1553 of file Panzer_STK_Interface.hpp.
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Definition at line 1554 of file Panzer_STK_Interface.hpp.
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Definition at line 1559 of file Panzer_STK_Interface.hpp.
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Definition at line 1560 of file Panzer_STK_Interface.hpp.
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Definition at line 1562 of file Panzer_STK_Interface.hpp.
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Definition at line 1564 of file Panzer_STK_Interface.hpp.