Amesos2 - Direct Sparse Solver Interfaces  Version of the Day
Amesos2_Cholmod_decl.hpp
Go to the documentation of this file.
1 // @HEADER
2 //
3 // ***********************************************************************
4 //
5 // Amesos2: Templated Direct Sparse Solver Package
6 // Copyright 2011 Sandia Corporation
7 //
8 // Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
9 // the U.S. Government retains certain rights in this software.
10 //
11 // Redistribution and use in source and binary forms, with or without
12 // modification, are permitted provided that the following conditions are
13 // met:
14 //
15 // 1. Redistributions of source code must retain the above copyright
16 // notice, this list of conditions and the following disclaimer.
17 //
18 // 2. Redistributions in binary form must reproduce the above copyright
19 // notice, this list of conditions and the following disclaimer in the
20 // documentation and/or other materials provided with the distribution.
21 //
22 // 3. Neither the name of the Corporation nor the names of the
23 // contributors may be used to endorse or promote products derived from
24 // this software without specific prior written permission.
25 //
26 // THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
27 // EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
28 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
29 // PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
30 // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
31 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
32 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
33 // PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
34 // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
35 // NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
36 // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
37 //
38 // Questions? Contact Michael A. Heroux (maherou@sandia.gov)
39 //
40 // ***********************************************************************
41 //
42 // @HEADER
43 
53 #ifndef AMESOS2_CHOLMOD_DECL_HPP
54 #define AMESOS2_CHOLMOD_DECL_HPP
55 
56 #include "Amesos2_SolverTraits.hpp"
57 #include "Amesos2_SolverCore.hpp"
59 
60 #if defined(KOKKOSKERNELS_ENABLE_SUPERNODAL_SPTRSV) && defined(KOKKOSKERNELS_ENABLE_TPL_CHOLMOD)
61 #include "KokkosKernels_Handle.hpp"
62 #endif
63 
64 namespace Amesos2 {
65 
66 
74 template <class Matrix,
75  class Vector>
76 class Cholmod : public SolverCore<Amesos2::Cholmod, Matrix, Vector>
77 {
78  friend class SolverCore<Amesos2::Cholmod,Matrix,Vector>; // Give our base access
79  // to our private
80  // implementation funcs
81 public:
82 
84  static const char* name; // declaration. Initialization outside.
85 
86  typedef Cholmod<Matrix,Vector> type;
87  typedef SolverCore<Amesos2::Cholmod,Matrix,Vector> super_type;
88 
89  // Since typedef's are not inheritted, go grab them
90  typedef typename super_type::scalar_type scalar_type;
91  typedef typename super_type::local_ordinal_type local_ordinal_type;
92  typedef typename super_type::global_ordinal_type global_ordinal_type;
93  typedef typename super_type::global_size_type global_size_type;
94  typedef typename super_type::node_type node_type;
95 
96  typedef TypeMap<Amesos2::Cholmod,scalar_type> type_map;
97 
98  /*
99  * The CHOLMOD interface will need two other typedef's, which are:
100  * - the CHOLMOD type that corresponds to scalar_type and
101  * - the corresponding type to use for magnitude
102  */
103  typedef typename type_map::type chol_type;
104  typedef typename type_map::magnitude_type magnitude_type;
105 
106  typedef FunctionMap<Amesos2::Cholmod,chol_type> function_map;
107 
109 
110 
117  Cholmod(Teuchos::RCP<const Matrix> A,
118  Teuchos::RCP<Vector> X,
119  Teuchos::RCP<const Vector> B);
120 
121 
123  ~Cholmod( );
124 
126 
127 private:
128 
132  int preOrdering_impl();
133 
134 
143 
144 
151 
152 
164  int solve_impl(const Teuchos::Ptr<MultiVecAdapter<Vector> > X,
165  const Teuchos::Ptr<const MultiVecAdapter<Vector> > B) const;
166 
167 
171  bool matrixShapeOK_impl() const;
172 
173 
201  void setParameters_impl(
202  const Teuchos::RCP<Teuchos::ParameterList> & parameterList );
203 
204 
211  Teuchos::RCP<const Teuchos::ParameterList> getValidParameters_impl() const;
212 
213 
222  bool loadA_impl(EPhase current_phase);
223 
224 
225  // struct holds all data necessary to make a cholmod factorization or solve call
226  mutable struct CholData {
227  cholmod_sparse A;
228  cholmod_dense x, b;
229  cholmod_dense *Y, *E;
230  cholmod_factor *L;
231  cholmod_common c;
232  } data_;
233 
234  typedef Kokkos::DefaultHostExecutionSpace HostExecSpaceType;
235  typedef typename HostExecSpaceType::memory_space HostMemSpaceType;
236 
237  typedef long size_type;
238  typedef long ordinal_type;
239  typedef Kokkos::View<size_type*, HostExecSpaceType> host_size_type_array;
240  typedef Kokkos::View<ordinal_type*, HostExecSpaceType> host_ordinal_type_array;
241 
242  typedef Kokkos::View<chol_type*, HostExecSpaceType> host_value_type_array;
243 
244  // The following Views are persisting storage arrays for A, X, and B
246  host_value_type_array host_nzvals_view_;
248  host_size_type_array host_rows_view_;
250  host_ordinal_type_array host_col_ptr_view_;
251 
252  typedef typename Kokkos::View<chol_type**, Kokkos::LayoutLeft, HostExecSpaceType>
253  host_solve_array_t;
254 
256  mutable host_solve_array_t host_xValues_;
257  int ldx_;
258 
260  mutable host_solve_array_t host_bValues_;
261  int ldb_;
262 
263 #if defined(KOKKOSKERNELS_ENABLE_SUPERNODAL_SPTRSV) && defined(KOKKOSKERNELS_ENABLE_TPL_CHOLMOD)
264 
265  typedef Kokkos::DefaultExecutionSpace DeviceExecSpaceType;
266 
267  #ifdef KOKKOS_ENABLE_CUDA
268  // solver will be UVM off even though Tpetra is CudaUVMSpace
269  typedef typename Kokkos::CudaSpace DeviceMemSpaceType;
270  #else
271  typedef typename DeviceExecSpaceType::memory_space DeviceMemSpaceType;
272  #endif
273 
274  typedef Kokkos::View<chol_type**, Kokkos::LayoutLeft, DeviceMemSpaceType>
275  device_solve_array_t;
276  // For triangular solves we have both host and device versions of xValues and
277  // bValues because a parameter can turn it on or off.
278  mutable device_solve_array_t device_xValues_;
279  mutable device_solve_array_t device_bValues_;
280  typedef Kokkos::View<int*, HostMemSpaceType> host_int_array;
281  typedef Kokkos::View<int*, DeviceMemSpaceType> device_int_array;
282  host_int_array host_trsv_etree_;
283  host_int_array host_trsv_perm_;
284  device_int_array device_trsv_perm_;
285  mutable device_solve_array_t device_trsv_rhs_;
286  mutable device_solve_array_t device_trsv_sol_;
287  typedef KokkosKernels::Experimental::KokkosKernelsHandle <size_type, ordinal_type, chol_type,
288  DeviceExecSpaceType, DeviceMemSpaceType, DeviceMemSpaceType> kernel_handle_type;
289  mutable kernel_handle_type device_khL_;
290  mutable kernel_handle_type device_khU_;
291 #endif
292 
293  bool firstsolve;
294 
295  // Used as a hack around cholmod doing ordering and symfact together
296  bool skip_symfact;
297 
298  Teuchos::RCP<const Tpetra::Map<local_ordinal_type,global_ordinal_type,node_type> > map;
299 
300  bool is_contiguous_;
301  bool use_triangular_solves_;
302 
303  void triangular_solve_symbolic();
304  void triangular_solve_numeric();
305 
306 public: // for GPU
307  void triangular_solve() const; // Only for internal use - public to support kernels
308 }; // End class Cholmod
309 
310 
311 /* Specialize solver_traits struct for Cholmod
312  *
313  * Based on the CHOLMOD documentation, the support for
314  * single-precision complex numbers is unclear. Much of the
315  * discussion of complex types only makes explicit mention of 'double'
316  * types. So, be pessimistic for now and don't declare
317  * single-precision complex support
318  */
319 template <>
320 struct solver_traits<Cholmod> {
321 
322 // Cholmod does not yet support float.
323 #ifdef HAVE_TEUCHOS_COMPLEX
324  typedef Meta::make_list3<double, std::complex<double>,
325  Kokkos::complex<double>> supported_scalars;
326 #else
327  typedef Meta::make_list1<double> supported_scalars;
328 #endif
329 };
330 
331 template <typename Scalar, typename LocalOrdinal, typename ExecutionSpace>
332 struct solver_supports_matrix<Cholmod,
333  KokkosSparse::CrsMatrix<Scalar, LocalOrdinal, ExecutionSpace>> {
334  static const bool value = true;
335 };
336 
337 } // end namespace Amesos2
338 
339 #endif // AMESOS2_CHOLMOD_DECL_HPP
int preOrdering_impl()
Performs pre-ordering on the matrix to increase efficiency.
Definition: Amesos2_Cholmod_def.hpp:112
Amesos2::SolverCore: A templated interface for interaction with third-party direct sparse solvers...
Definition: Amesos2_SolverCore_decl.hpp:105
host_solve_array_t host_xValues_
Persisting 1D store for X.
Definition: Amesos2_Cholmod_decl.hpp:256
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters_impl() const
Definition: Amesos2_Cholmod_def.hpp:375
Template for providing a mechanism to map function calls to the correct Solver function based on the ...
Map types to solver-specific data-types and enums.
Definition: Amesos2_TypeMap.hpp:82
bool matrixShapeOK_impl() const
Determines whether the shape of the matrix is OK for this solver.
Definition: Amesos2_Cholmod_def.hpp:324
std::string name() const
Return the name of this solver.
Definition: Amesos2_SolverCore_def.hpp:509
host_value_type_array host_nzvals_view_
Stores the values of the nonzero entries for CHOLMOD.
Definition: Amesos2_Cholmod_decl.hpp:246
Provides traits about solvers.
Definition: Amesos2_SolverTraits.hpp:71
host_ordinal_type_array host_col_ptr_view_
Stores the row indices of the nonzero entries.
Definition: Amesos2_Cholmod_decl.hpp:250
int solve_impl(const Teuchos::Ptr< MultiVecAdapter< Vector > > X, const Teuchos::Ptr< const MultiVecAdapter< Vector > > B) const
CHOLMOD specific solve.
Definition: Amesos2_Cholmod_def.hpp:224
void setParameters_impl(const Teuchos::RCP< Teuchos::ParameterList > &parameterList)
Definition: Amesos2_Cholmod_def.hpp:332
host_size_type_array host_rows_view_
Stores the location in Ai_ and Aval_ that starts row j.
Definition: Amesos2_Cholmod_decl.hpp:248
Passes functions to TPL functions based on type.
Definition: Amesos2_FunctionMap.hpp:76
Provides access to interesting solver traits.
bool loadA_impl(EPhase current_phase)
Reads matrix data into internal structures.
Definition: Amesos2_Cholmod_def.hpp:427
int symbolicFactorization_impl()
Perform symbolic factorization of the matrix using CHOLMOD.
Definition: Amesos2_Cholmod_def.hpp:137
Amesos2 interface to the CHOLMOD package.
Definition: Amesos2_Cholmod_decl.hpp:76
int numericFactorization_impl()
CHOLMOD specific numeric factorization.
Definition: Amesos2_Cholmod_def.hpp:175
host_solve_array_t host_bValues_
Persisting 1D store for B.
Definition: Amesos2_Cholmod_decl.hpp:260