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MueLu_TentativePFactory_kokkos_def.hpp
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46 #ifndef MUELU_TENTATIVEPFACTORY_KOKKOS_DEF_HPP
47 #define MUELU_TENTATIVEPFACTORY_KOKKOS_DEF_HPP
48 
49 #ifdef HAVE_MUELU_KOKKOS_REFACTOR
50 
51 #include "Kokkos_UnorderedMap.hpp"
52 
54 
55 #include "MueLu_Aggregates_kokkos.hpp"
56 #include "MueLu_AmalgamationFactory_kokkos.hpp"
57 #include "MueLu_AmalgamationInfo_kokkos.hpp"
58 #include "MueLu_CoarseMapFactory_kokkos.hpp"
59 #include "MueLu_MasterList.hpp"
60 #include "MueLu_NullspaceFactory_kokkos.hpp"
61 #include "MueLu_PerfUtils.hpp"
62 #include "MueLu_Monitor.hpp"
63 #include "MueLu_Utilities_kokkos.hpp"
64 
65 namespace MueLu {
66 
67  namespace { // anonymous
68 
69  template<class LocalOrdinal, class View>
70  class ReduceMaxFunctor{
71  public:
72  ReduceMaxFunctor(View view) : view_(view) { }
73 
74  KOKKOS_INLINE_FUNCTION
75  void operator()(const LocalOrdinal &i, LocalOrdinal& vmax) const {
76  if (vmax < view_(i))
77  vmax = view_(i);
78  }
79 
80  KOKKOS_INLINE_FUNCTION
81  void join (volatile LocalOrdinal& dst, const volatile LocalOrdinal& src) const {
82  if (dst < src) {
83  dst = src;
84  }
85  }
86 
87  KOKKOS_INLINE_FUNCTION
88  void init (LocalOrdinal& dst) const {
89  dst = 0;
90  }
91  private:
92  View view_;
93  };
94 
95  // local QR decomposition
96  template<class LOType, class GOType, class SCType,class DeviceType, class NspType, class aggRowsType, class maxAggDofSizeType, class agg2RowMapLOType, class statusType, class rowsType, class rowsAuxType, class colsAuxType, class valsAuxType>
97  class LocalQRDecompFunctor {
98  private:
99  typedef LOType LO;
100  typedef GOType GO;
101  typedef SCType SC;
102 
103  typedef typename DeviceType::execution_space execution_space;
104  typedef Kokkos::ArithTraits<SC> ATS;
105  typedef typename ATS::magnitudeType Magnitude;
106 
109 
110  private:
111 
112  NspType fineNS;
113  NspType coarseNS;
114  aggRowsType aggRows;
115  maxAggDofSizeType maxAggDofSize; //< maximum number of dofs in aggregate (max size of aggregate * numDofsPerNode)
116  agg2RowMapLOType agg2RowMapLO;
117  statusType statusAtomic;
118  rowsType rows;
119  rowsAuxType rowsAux;
120  colsAuxType colsAux;
121  valsAuxType valsAux;
122  bool doQRStep;
123  public:
124  LocalQRDecompFunctor(NspType fineNS_, NspType coarseNS_, aggRowsType aggRows_, maxAggDofSizeType maxAggDofSize_, agg2RowMapLOType agg2RowMapLO_, statusType statusAtomic_, rowsType rows_, rowsAuxType rowsAux_, colsAuxType colsAux_, valsAuxType valsAux_, bool doQRStep_) :
125  fineNS(fineNS_),
126  coarseNS(coarseNS_),
127  aggRows(aggRows_),
128  maxAggDofSize(maxAggDofSize_),
129  agg2RowMapLO(agg2RowMapLO_),
130  statusAtomic(statusAtomic_),
131  rows(rows_),
132  rowsAux(rowsAux_),
133  colsAux(colsAux_),
134  valsAux(valsAux_),
135  doQRStep(doQRStep_)
136  { }
137 
138  KOKKOS_INLINE_FUNCTION
139  void operator() ( const typename Kokkos::TeamPolicy<execution_space>::member_type & thread, size_t& nnz) const {
140  auto agg = thread.league_rank();
141 
142  // size of aggregate: number of DOFs in aggregate
143  auto aggSize = aggRows(agg+1) - aggRows(agg);
144 
145  const SC one = ATS::one();
146  const SC two = one + one;
147  const SC zero = ATS::zero();
148  const auto zeroM = ATS::magnitude(zero);
149 
150  int m = aggSize;
151  int n = fineNS.extent(1);
152 
153  // calculate row offset for coarse nullspace
154  Xpetra::global_size_t offset = agg * n;
155 
156  if (doQRStep) {
157 
158  // Extract the piece of the nullspace corresponding to the aggregate
159  shared_matrix r(thread.team_shmem(), m, n); // A (initially), R (at the end)
160  for (int j = 0; j < n; j++)
161  for (int k = 0; k < m; k++)
162  r(k,j) = fineNS(agg2RowMapLO(aggRows(agg)+k),j);
163 #if 0
164  printf("A\n");
165  for (int i = 0; i < m; i++) {
166  for (int j = 0; j < n; j++)
167  printf(" %5.3lf ", r(i,j));
168  printf("\n");
169  }
170 #endif
171 
172  // Calculate QR decomposition (standard)
173  shared_matrix q(thread.team_shmem(), m, m); // Q
174  if (m >= n) {
175  bool isSingular = false;
176 
177  // Initialize Q^T
178  auto qt = q;
179  for (int i = 0; i < m; i++) {
180  for (int j = 0; j < m; j++)
181  qt(i,j) = zero;
182  qt(i,i) = one;
183  }
184 
185  for (int k = 0; k < n; k++) { // we ignore "n" instead of "n-1" to normalize
186  // FIXME_KOKKOS: use team
187  Magnitude s = zeroM, norm, norm_x;
188  for (int i = k+1; i < m; i++)
189  s += pow(ATS::magnitude(r(i,k)), 2);
190  norm = sqrt(pow(ATS::magnitude(r(k,k)), 2) + s);
191 
192  if (norm == zero) {
193  isSingular = true;
194  break;
195  }
196 
197  r(k,k) -= norm*one;
198 
199  norm_x = sqrt(pow(ATS::magnitude(r(k,k)), 2) + s);
200  if (norm_x == zeroM) {
201  // We have a single diagonal element in the column.
202  // No reflections required. Just need to restor r(k,k).
203  r(k,k) = norm*one;
204  continue;
205  }
206 
207  // FIXME_KOKKOS: use team
208  for (int i = k; i < m; i++)
209  r(i,k) /= norm_x;
210 
211  // Update R(k:m,k+1:n)
212  for (int j = k+1; j < n; j++) {
213  // FIXME_KOKKOS: use team in the loops
214  SC si = zero;
215  for (int i = k; i < m; i++)
216  si += r(i,k) * r(i,j);
217  for (int i = k; i < m; i++)
218  r(i,j) -= two*si * r(i,k);
219  }
220 
221  // Update Q^T (k:m,k:m)
222  for (int j = k; j < m; j++) {
223  // FIXME_KOKKOS: use team in the loops
224  SC si = zero;
225  for (int i = k; i < m; i++)
226  si += r(i,k) * qt(i,j);
227  for (int i = k; i < m; i++)
228  qt(i,j) -= two*si * r(i,k);
229  }
230 
231  // Fix R(k:m,k)
232  r(k,k) = norm*one;
233  for (int i = k+1; i < m; i++)
234  r(i,k) = zero;
235  }
236 
237 #if 0
238  // Q = (Q^T)^T
239  for (int i = 0; i < m; i++)
240  for (int j = 0; j < i; j++) {
241  SC tmp = qt(i,j);
242  qt(i,j) = qt(j,i);
243  qt(j,i) = tmp;
244  }
245 #endif
246 
247  // Build coarse nullspace using the upper triangular part of R
248  for (int j = 0; j < n; j++)
249  for (int k = 0; k <= j; k++)
250  coarseNS(offset+k,j) = r(k,j);
251 
252  if (isSingular) {
253  statusAtomic(1) = true;
254  return;
255  }
256 
257  } else {
258  // Special handling for m < n (i.e. single node aggregates in structural mechanics)
259 
260  // The local QR decomposition is not possible in the "overconstrained"
261  // case (i.e. number of columns in qr > number of rowsAux), which
262  // corresponds to #DOFs in Aggregate < n. For usual problems this
263  // is only possible for single node aggregates in structural mechanics.
264  // (Similar problems may arise in discontinuous Galerkin problems...)
265  // We bypass the QR decomposition and use an identity block in the
266  // tentative prolongator for the single node aggregate and transfer the
267  // corresponding fine level null space information 1-to-1 to the coarse
268  // level null space part.
269 
270  // NOTE: The resulting tentative prolongation operator has
271  // (m*DofsPerNode-n) zero columns leading to a singular
272  // coarse level operator A. To deal with that one has the following
273  // options:
274  // - Use the "RepairMainDiagonal" flag in the RAPFactory (default:
275  // false) to add some identity block to the diagonal of the zero rowsAux
276  // in the coarse level operator A, such that standard level smoothers
277  // can be used again.
278  // - Use special (projection-based) level smoothers, which can deal
279  // with singular matrices (very application specific)
280  // - Adapt the code below to avoid zero columns. However, we do not
281  // support a variable number of DOFs per node in MueLu/Xpetra which
282  // makes the implementation really hard.
283  //
284  // FIXME: do we need to check for singularity here somehow? Zero
285  // columns would be easy but linear dependency would require proper QR.
286 
287  // R = extended (by adding identity rowsAux) qr
288  for (int j = 0; j < n; j++)
289  for (int k = 0; k < n; k++)
290  if (k < m)
291  coarseNS(offset+k,j) = r(k,j);
292  else
293  coarseNS(offset+k,j) = (k == j ? one : zero);
294 
295  // Q = I (rectangular)
296  for (int i = 0; i < m; i++)
297  for (int j = 0; j < n; j++)
298  q(i,j) = (j == i ? one : zero);
299  }
300 
301  // Process each row in the local Q factor and fill helper arrays to assemble P
302  for (int j = 0; j < m; j++) {
303  LO localRow = agg2RowMapLO(aggRows(agg)+j);
304  size_t rowStart = rowsAux(localRow);
305  size_t lnnz = 0;
306  for (int k = 0; k < n; k++) {
307  // skip zeros
308  if (q(j,k) != zero) {
309  colsAux(rowStart+lnnz) = offset + k;
310  valsAux(rowStart+lnnz) = q(j,k);
311  lnnz++;
312  }
313  }
314  rows(localRow+1) = lnnz;
315  nnz += lnnz;
316  }
317 
318 #if 0
319  printf("R\n");
320  for (int i = 0; i < m; i++) {
321  for (int j = 0; j < n; j++)
322  printf(" %5.3lf ", coarseNS(i,j));
323  printf("\n");
324  }
325 
326  printf("Q\n");
327  for (int i = 0; i < aggSize; i++) {
328  for (int j = 0; j < aggSize; j++)
329  printf(" %5.3lf ", q(i,j));
330  printf("\n");
331  }
332 #endif
333  } else {
335  // "no-QR" option //
337  // Local Q factor is just the fine nullspace support over the current aggregate.
338  // Local R factor is the identity.
339  // TODO I have not implemented any special handling for aggregates that are too
340  // TODO small to locally support the nullspace, as is done in the standard QR
341  // TODO case above.
342 
343  for (int j = 0; j < m; j++) {
344  LO localRow = agg2RowMapLO(aggRows(agg)+j);
345  size_t rowStart = rowsAux(localRow);
346  size_t lnnz = 0;
347  for (int k = 0; k < n; k++) {
348  const SC qr_jk = fineNS(localRow,k);
349  // skip zeros
350  if (qr_jk != zero) {
351  colsAux(rowStart+lnnz) = offset + k;
352  valsAux(rowStart+lnnz) = qr_jk;
353  lnnz++;
354  }
355  }
356  rows(localRow+1) = lnnz;
357  nnz += lnnz;
358  }
359 
360  for (int j = 0; j < n; j++)
361  coarseNS(offset+j,j) = one;
362 
363  }
364 
365  }
366 
367  // amount of shared memory
368  size_t team_shmem_size( int /* team_size */ ) const {
369  if (doQRStep) {
370  int m = maxAggDofSize;
371  int n = fineNS.extent(1);
372  return shared_matrix::shmem_size(m, n) + // r
373  shared_matrix::shmem_size(m, m); // q
374  } else
375  return 0;
376  }
377  };
378 
379  } // namespace anonymous
380 
381  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class DeviceType>
382  RCP<const ParameterList> TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::GetValidParameterList() const {
383  RCP<ParameterList> validParamList = rcp(new ParameterList());
384 
385 #define SET_VALID_ENTRY(name) validParamList->setEntry(name, MasterList::getEntry(name))
386  SET_VALID_ENTRY("tentative: calculate qr");
387  SET_VALID_ENTRY("tentative: build coarse coordinates");
388 #undef SET_VALID_ENTRY
389 
390  validParamList->set< RCP<const FactoryBase> >("A", Teuchos::null, "Generating factory of the matrix A");
391  validParamList->set< RCP<const FactoryBase> >("Aggregates", Teuchos::null, "Generating factory of the aggregates");
392  validParamList->set< RCP<const FactoryBase> >("Nullspace", Teuchos::null, "Generating factory of the nullspace");
393  validParamList->set< RCP<const FactoryBase> >("Scaled Nullspace", Teuchos::null, "Generating factory of the scaled nullspace");
394  validParamList->set< RCP<const FactoryBase> >("UnAmalgamationInfo", Teuchos::null, "Generating factory of UnAmalgamationInfo");
395  validParamList->set< RCP<const FactoryBase> >("CoarseMap", Teuchos::null, "Generating factory of the coarse map");
396  validParamList->set< RCP<const FactoryBase> >("Coordinates", Teuchos::null, "Generating factory of the coordinates");
397 
398  // Make sure we don't recursively validate options for the matrixmatrix kernels
399  ParameterList norecurse;
400  norecurse.disableRecursiveValidation();
401  validParamList->set<ParameterList> ("matrixmatrix: kernel params", norecurse, "MatrixMatrix kernel parameters");
402 
403  return validParamList;
404  }
405 
406  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class DeviceType>
407  void TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::DeclareInput(Level& fineLevel, Level& /* coarseLevel */) const {
408 
409  const ParameterList& pL = GetParameterList();
410  // NOTE: This guy can only either be 'Nullspace' or 'Scaled Nullspace' or else the validator above will cause issues
411  std::string nspName = "Nullspace";
412  if(pL.isParameter("Nullspace name")) nspName = pL.get<std::string>("Nullspace name");
413 
414  Input(fineLevel, "A");
415  Input(fineLevel, "Aggregates");
416  Input(fineLevel, nspName);
417  Input(fineLevel, "UnAmalgamationInfo");
418  Input(fineLevel, "CoarseMap");
419  if( fineLevel.GetLevelID() == 0 &&
420  fineLevel.IsAvailable("Coordinates", NoFactory::get()) && // we have coordinates (provided by user app)
421  pL.get<bool>("tentative: build coarse coordinates") ) { // and we want coordinates on other levels
422  bTransferCoordinates_ = true; // then set the transfer coordinates flag to true
423  Input(fineLevel, "Coordinates");
424  } else if (bTransferCoordinates_) {
425  Input(fineLevel, "Coordinates");
426  }
427  }
428 
429  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class DeviceType>
430  void TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::Build(Level& fineLevel, Level& coarseLevel) const {
431  return BuildP(fineLevel, coarseLevel);
432  }
433 
434  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class DeviceType>
435  void TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::BuildP(Level& fineLevel, Level& coarseLevel) const {
436  FactoryMonitor m(*this, "Build", coarseLevel);
437 
438  typedef typename Teuchos::ScalarTraits<Scalar>::coordinateType coordinate_type;
439  typedef Xpetra::MultiVector<coordinate_type,LO,GO,NO> RealValuedMultiVector;
440  typedef Xpetra::MultiVectorFactory<coordinate_type,LO,GO,NO> RealValuedMultiVectorFactory;
441  const ParameterList& pL = GetParameterList();
442  std::string nspName = "Nullspace";
443  if(pL.isParameter("Nullspace name")) nspName = pL.get<std::string>("Nullspace name");
444 
445  auto A = Get< RCP<Matrix> > (fineLevel, "A");
446  auto aggregates = Get< RCP<Aggregates_kokkos> > (fineLevel, "Aggregates");
447  auto amalgInfo = Get< RCP<AmalgamationInfo_kokkos> > (fineLevel, "UnAmalgamationInfo");
448  auto fineNullspace = Get< RCP<MultiVector> > (fineLevel, nspName);
449  auto coarseMap = Get< RCP<const Map> > (fineLevel, "CoarseMap");
450  RCP<RealValuedMultiVector> fineCoords;
451  if(bTransferCoordinates_) {
452  fineCoords = Get< RCP<RealValuedMultiVector> >(fineLevel, "Coordinates");
453  }
454 
455  RCP<Matrix> Ptentative;
456  RCP<MultiVector> coarseNullspace;
457  RCP<RealValuedMultiVector> coarseCoords;
458 
459  if(bTransferCoordinates_) {
460  ArrayView<const GO> elementAList = coarseMap->getNodeElementList();
461  GO indexBase = coarseMap->getIndexBase();
462 
463  LO blkSize = 1;
464  if (rcp_dynamic_cast<const StridedMap>(coarseMap) != Teuchos::null)
465  blkSize = rcp_dynamic_cast<const StridedMap>(coarseMap)->getFixedBlockSize();
466 
467  Array<GO> elementList;
468  ArrayView<const GO> elementListView;
469  if (blkSize == 1) {
470  // Scalar system
471  // No amalgamation required
472  elementListView = elementAList;
473 
474  } else {
475  auto numElements = elementAList.size() / blkSize;
476 
477  elementList.resize(numElements);
478 
479  // Amalgamate the map
480  for (LO i = 0; i < Teuchos::as<LO>(numElements); i++)
481  elementList[i] = (elementAList[i*blkSize]-indexBase)/blkSize + indexBase;
482 
483  elementListView = elementList;
484  }
485 
486  auto uniqueMap = fineCoords->getMap();
487  auto coarseCoordMap = MapFactory::Build(coarseMap->lib(), Teuchos::OrdinalTraits<Xpetra::global_size_t>::invalid(),
488  elementListView, indexBase, coarseMap->getComm());
489  coarseCoords = RealValuedMultiVectorFactory::Build(coarseCoordMap, fineCoords->getNumVectors());
490 
491  // Create overlapped fine coordinates to reduce global communication
492  RCP<RealValuedMultiVector> ghostedCoords = fineCoords;
493  if (aggregates->AggregatesCrossProcessors()) {
494  auto nonUniqueMap = aggregates->GetMap();
495  auto importer = ImportFactory::Build(uniqueMap, nonUniqueMap);
496 
497  ghostedCoords = RealValuedMultiVectorFactory::Build(nonUniqueMap, fineCoords->getNumVectors());
498  ghostedCoords->doImport(*fineCoords, *importer, Xpetra::INSERT);
499  }
500 
501  // The good new is that his graph has already been constructed for the
502  // TentativePFactory and was cached in Aggregates. So this is a no-op.
503  auto aggGraph = aggregates->GetGraph();
504  auto numAggs = aggGraph.numRows();
505 
506  auto fineCoordsView = fineCoords ->template getLocalView<DeviceType>();
507  auto coarseCoordsView = coarseCoords->template getLocalView<DeviceType>();
508 
509  // Fill in coarse coordinates
510  {
511  SubFactoryMonitor m2(*this, "AverageCoords", coarseLevel);
512 
513  const auto dim = fineCoords->getNumVectors();
514 
515  typename AppendTrait<decltype(fineCoordsView), Kokkos::RandomAccess>::type fineCoordsRandomView = fineCoordsView;
516  for (size_t j = 0; j < dim; j++) {
517  Kokkos::parallel_for("MueLu::TentativeP::BuildCoords", Kokkos::RangePolicy<local_ordinal_type, execution_space>(0, numAggs),
518  KOKKOS_LAMBDA(const LO i) {
519  // A row in this graph represents all node ids in the aggregate
520  // Therefore, averaging is very easy
521 
522  auto aggregate = aggGraph.rowConst(i);
523 
524  coordinate_type sum = 0.0; // do not use Scalar here (Stokhos)
525  for (size_t colID = 0; colID < static_cast<size_t>(aggregate.length); colID++)
526  sum += fineCoordsRandomView(aggregate(colID),j);
527 
528  coarseCoordsView(i,j) = sum / aggregate.length;
529  });
530  }
531  }
532  }
533 
534  if (!aggregates->AggregatesCrossProcessors())
535  BuildPuncoupled(coarseLevel, A, aggregates, amalgInfo, fineNullspace, coarseMap, Ptentative, coarseNullspace, coarseLevel.GetLevelID());
536  else
537  BuildPcoupled (A, aggregates, amalgInfo, fineNullspace, coarseMap, Ptentative, coarseNullspace);
538 
539  // If available, use striding information of fine level matrix A for range
540  // map and coarseMap as domain map; otherwise use plain range map of
541  // Ptent = plain range map of A for range map and coarseMap as domain map.
542  // NOTE:
543  // The latter is not really safe, since there is no striding information
544  // for the range map. This is not really a problem, since striding
545  // information is always available on the intermedium levels and the
546  // coarsest levels.
547  if (A->IsView("stridedMaps") == true)
548  Ptentative->CreateView("stridedMaps", A->getRowMap("stridedMaps"), coarseMap);
549  else
550  Ptentative->CreateView("stridedMaps", Ptentative->getRangeMap(), coarseMap);
551 
552  if(bTransferCoordinates_) {
553  Set(coarseLevel, "Coordinates", coarseCoords);
554  }
555  Set(coarseLevel, "Nullspace", coarseNullspace);
556  Set(coarseLevel, "P", Ptentative);
557 
558  if (IsPrint(Statistics1)) {
559  RCP<ParameterList> params = rcp(new ParameterList());
560  params->set("printLoadBalancingInfo", true);
561  GetOStream(Statistics1) << PerfUtils::PrintMatrixInfo(*Ptentative, "Ptent", params);
562  }
563  }
564 
565  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class DeviceType>
566  void TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::
567  BuildPuncoupled(Level& coarseLevel, RCP<Matrix> A, RCP<Aggregates_kokkos> aggregates,
568  RCP<AmalgamationInfo_kokkos> amalgInfo, RCP<MultiVector> fineNullspace,
569  RCP<const Map> coarseMap, RCP<Matrix>& Ptentative,
570  RCP<MultiVector>& coarseNullspace, const int levelID) const {
571  auto rowMap = A->getRowMap();
572  auto colMap = A->getColMap();
573 
574  const size_t numRows = rowMap->getNodeNumElements();
575  const size_t NSDim = fineNullspace->getNumVectors();
576 
577  typedef Kokkos::ArithTraits<SC> ATS;
578  using impl_ATS = Kokkos::ArithTraits<typename ATS::val_type>;
579  const SC zero = ATS::zero(), one = ATS::one();
580 
581  const LO INVALID = Teuchos::OrdinalTraits<LO>::invalid();
582 
583  typename Aggregates_kokkos::local_graph_type aggGraph;
584  {
585  SubFactoryMonitor m2(*this, "Get Aggregates graph", coarseLevel);
586  aggGraph = aggregates->GetGraph();
587  }
588  auto aggRows = aggGraph.row_map;
589  auto aggCols = aggGraph.entries;
590 
591  // Aggregates map is based on the amalgamated column map
592  // We can skip global-to-local conversion if LIDs in row map are
593  // same as LIDs in column map
594  bool goodMap;
595  {
596  SubFactoryMonitor m2(*this, "Check good map", coarseLevel);
597  goodMap = isGoodMap(*rowMap, *colMap);
598  }
599  // FIXME_KOKKOS: need to proofread later code for bad maps
600  TEUCHOS_TEST_FOR_EXCEPTION(!goodMap, Exceptions::RuntimeError,
601  "MueLu: TentativePFactory_kokkos: for now works only with good maps "
602  "(i.e. \"matching\" row and column maps)");
603 
604  // STEP 1: do unamalgamation
605  // The non-kokkos version uses member functions from the AmalgamationInfo
606  // container class to unamalgamate the data. In contrast, the kokkos
607  // version of TentativePFactory does the unamalgamation here and only uses
608  // the data of the AmalgamationInfo container class
609 
610  // Extract information for unamalgamation
611  LO fullBlockSize, blockID, stridingOffset, stridedBlockSize;
612  GO indexBase;
613  amalgInfo->GetStridingInformation(fullBlockSize, blockID, stridingOffset, stridedBlockSize, indexBase);
614  GO globalOffset = amalgInfo->GlobalOffset();
615 
616  // Extract aggregation info (already in Kokkos host views)
617  auto procWinner = aggregates->GetProcWinner() ->template getLocalView<DeviceType>();
618  auto vertex2AggId = aggregates->GetVertex2AggId()->template getLocalView<DeviceType>();
619  const size_t numAggregates = aggregates->GetNumAggregates();
620 
621  int myPID = aggregates->GetMap()->getComm()->getRank();
622 
623  // Create Kokkos::View (on the device) to store the aggreate dof sizes
624  // Later used to get aggregate dof offsets
625  // NOTE: This zeros itself on construction
626  typedef typename Aggregates_kokkos::aggregates_sizes_type::non_const_type AggSizeType;
627  AggSizeType aggDofSizes;
628 
629  if (stridedBlockSize == 1) {
630  SubFactoryMonitor m2(*this, "Calc AggSizes", coarseLevel);
631 
632  // FIXME_KOKKOS: use ViewAllocateWithoutInitializing + set a single value
633  aggDofSizes = AggSizeType("agg_dof_sizes", numAggregates+1);
634 
635  auto sizesConst = aggregates->ComputeAggregateSizes();
636  Kokkos::deep_copy(Kokkos::subview(aggDofSizes, Kokkos::make_pair(static_cast<size_t>(1), numAggregates+1)), sizesConst);
637 
638  } else {
639  SubFactoryMonitor m2(*this, "Calc AggSizes", coarseLevel);
640 
641  // FIXME_KOKKOS: use ViewAllocateWithoutInitializing + set a single value
642  aggDofSizes = AggSizeType("agg_dof_sizes", numAggregates + 1);
643 
644  auto nodeMap = aggregates->GetMap()->getLocalMap();
645  auto dofMap = colMap->getLocalMap();
646 
647  Kokkos::parallel_for("MueLu:TentativePF:Build:compute_agg_sizes", range_type(0,numAggregates),
648  KOKKOS_LAMBDA(const LO agg) {
649  auto aggRowView = aggGraph.rowConst(agg);
650 
651  size_t size = 0;
652  for (LO colID = 0; colID < aggRowView.length; colID++) {
653  GO nodeGID = nodeMap.getGlobalElement(aggRowView(colID));
654 
655  for (LO k = 0; k < stridedBlockSize; k++) {
656  GO dofGID = (nodeGID - indexBase) * fullBlockSize + k + indexBase + globalOffset + stridingOffset;
657 
658  if (dofMap.getLocalElement(dofGID) != INVALID)
659  size++;
660  }
661  }
662  aggDofSizes(agg+1) = size;
663  });
664  }
665 
666  // Find maximum dof size for aggregates
667  // Later used to reserve enough scratch space for local QR decompositions
668  LO maxAggSize = 0;
669  ReduceMaxFunctor<LO,decltype(aggDofSizes)> reduceMax(aggDofSizes);
670  Kokkos::parallel_reduce("MueLu:TentativePF:Build:max_agg_size", range_type(0, aggDofSizes.extent(0)), reduceMax, maxAggSize);
671 
672  // parallel_scan (exclusive)
673  // The aggDofSizes View then contains the aggregate dof offsets
674  Kokkos::parallel_scan("MueLu:TentativePF:Build:aggregate_sizes:stage1_scan", range_type(0,numAggregates+1),
675  KOKKOS_LAMBDA(const LO i, LO& update, const bool& final_pass) {
676  update += aggDofSizes(i);
677  if (final_pass)
678  aggDofSizes(i) = update;
679  });
680 
681  // Create Kokkos::View on the device to store mapping
682  // between (local) aggregate id and row map ids (LIDs)
683  Kokkos::View<LO*, DeviceType> agg2RowMapLO(Kokkos::ViewAllocateWithoutInitializing("agg2row_map_LO"), numRows);
684  {
685  SubFactoryMonitor m2(*this, "Create Agg2RowMap", coarseLevel);
686 
687  AggSizeType aggOffsets(Kokkos::ViewAllocateWithoutInitializing("aggOffsets"), numAggregates);
688  Kokkos::deep_copy(aggOffsets, Kokkos::subview(aggDofSizes, Kokkos::make_pair(static_cast<size_t>(0), numAggregates)));
689 
690  Kokkos::parallel_for("MueLu:TentativePF:Build:createAgg2RowMap", range_type(0, vertex2AggId.extent(0)),
691  KOKKOS_LAMBDA(const LO lnode) {
692  if (procWinner(lnode, 0) == myPID) {
693  // No need for atomics, it's one-to-one
694  auto aggID = vertex2AggId(lnode,0);
695 
696  auto offset = Kokkos::atomic_fetch_add( &aggOffsets(aggID), stridedBlockSize );
697  // FIXME: I think this may be wrong
698  // We unconditionally add the whole block here. When we calculated
699  // aggDofSizes, we did the isLocalElement check. Something's fishy.
700  for (LO k = 0; k < stridedBlockSize; k++)
701  agg2RowMapLO(offset + k) = lnode*stridedBlockSize + k;
702  }
703  });
704  }
705 
706  // STEP 2: prepare local QR decomposition
707  // Reserve memory for tentative prolongation operator
708  coarseNullspace = MultiVectorFactory::Build(coarseMap, NSDim);
709 
710  // Pull out the nullspace vectors so that we can have random access (on the device)
711  auto fineNS = fineNullspace ->template getLocalView<DeviceType>();
712  auto coarseNS = coarseNullspace->template getLocalView<DeviceType>();
713 
714  size_t nnz = 0; // actual number of nnz
715 
716  typedef typename Xpetra::Matrix<SC,LO,GO,NO>::local_matrix_type local_matrix_type;
717  typedef typename local_matrix_type::row_map_type::non_const_type rows_type;
718  typedef typename local_matrix_type::index_type::non_const_type cols_type;
719  typedef typename local_matrix_type::values_type::non_const_type vals_type;
720 
721 
722  // Device View for status (error messages...)
723  typedef Kokkos::View<int[10], DeviceType> status_type;
724  status_type status("status");
725 
726  typename AppendTrait<decltype(fineNS), Kokkos::RandomAccess>::type fineNSRandom = fineNS;
727  typename AppendTrait<status_type, Kokkos::Atomic> ::type statusAtomic = status;
728 
729  rows_type rows;
730  cols_type cols;
731  vals_type vals;
732 
733  const ParameterList& pL = GetParameterList();
734  const bool& doQRStep = pL.get<bool>("tentative: calculate qr");
735  if (!doQRStep) {
736  GetOStream(Runtime1) << "TentativePFactory : bypassing local QR phase" << std::endl;
737  if (NSDim>1)
738  GetOStream(Warnings0) << "TentativePFactor : for nontrivial nullspace, this may degrade performance" << std::endl;
739  }
740 
741  if (NSDim == 1) {
742  // 1D is special, as it is the easiest. We don't even need to the QR,
743  // just normalize an array. Plus, no worries abot small aggregates. In
744  // addition, we do not worry about compression. It is unlikely that
745  // nullspace will have zeros. If it does, a prolongator row would be
746  // zero and we'll get singularity anyway.
747  SubFactoryMonitor m2(*this, "Stage 1 (LocalQR)", coarseLevel);
748 
749  nnz = numRows;
750 
751  // FIXME_KOKKOS: use ViewAllocateWithoutInitializing + set a single value
752  rows = rows_type("Ptent_rows", numRows+1);
753  cols = cols_type(Kokkos::ViewAllocateWithoutInitializing("Ptent_cols"), numRows);
754  vals = vals_type(Kokkos::ViewAllocateWithoutInitializing("Ptent_vals"), numRows);
755 
756  // Set up team policy with numAggregates teams and one thread per team.
757  // Each team handles a slice of the data associated with one aggregate
758  // and performs a local QR decomposition (in this case real QR is
759  // unnecessary).
760  const Kokkos::TeamPolicy<execution_space> policy(numAggregates, 1);
761 
762  if (doQRStep) {
763  Kokkos::parallel_for("MueLu:TentativePF:BuildUncoupled:main_loop", policy,
764  KOKKOS_LAMBDA(const typename Kokkos::TeamPolicy<execution_space>::member_type &thread) {
765  auto agg = thread.league_rank();
766 
767  // size of the aggregate (number of DOFs in aggregate)
768  LO aggSize = aggRows(agg+1) - aggRows(agg);
769 
770  // Extract the piece of the nullspace corresponding to the aggregate, and
771  // put it in the flat array, "localQR" (in column major format) for the
772  // QR routine. Trivial in 1D.
773  auto norm = impl_ATS::magnitude(zero);
774 
775  // Calculate QR by hand
776  // FIXME: shouldn't there be stridedblock here?
777  // FIXME_KOKKOS: shouldn't there be stridedblock here?
778  for (decltype(aggSize) k = 0; k < aggSize; k++) {
779  auto dnorm = impl_ATS::magnitude(fineNSRandom(agg2RowMapLO(aggRows(agg)+k),0));
780  norm += dnorm*dnorm;
781  }
782  norm = sqrt(norm);
783 
784  if (norm == zero) {
785  // zero column; terminate the execution
786  statusAtomic(1) = true;
787  return;
788  }
789 
790  // R = norm
791  coarseNS(agg, 0) = norm;
792 
793  // Q = localQR(:,0)/norm
794  for (decltype(aggSize) k = 0; k < aggSize; k++) {
795  LO localRow = agg2RowMapLO(aggRows(agg)+k);
796  SC localVal = fineNSRandom(agg2RowMapLO(aggRows(agg)+k),0) / norm;
797 
798  rows(localRow+1) = localRow+1;
799  cols(localRow) = agg;
800  vals(localRow) = localVal;
801 
802  }
803  });
804 
805  typename status_type::HostMirror statusHost = Kokkos::create_mirror_view(status);
806  Kokkos::deep_copy(statusHost, status);
807  for (decltype(statusHost.size()) i = 0; i < statusHost.size(); i++)
808  if (statusHost(i)) {
809  std::ostringstream oss;
810  oss << "MueLu::TentativePFactory::MakeTentative: ";
811  switch (i) {
812  case 0: oss << "!goodMap is not implemented"; break;
813  case 1: oss << "fine level NS part has a zero column"; break;
814  }
815  throw Exceptions::RuntimeError(oss.str());
816  }
817 
818  } else {
819  Kokkos::parallel_for("MueLu:TentativePF:BuildUncoupled:main_loop_noqr", policy,
820  KOKKOS_LAMBDA(const typename Kokkos::TeamPolicy<execution_space>::member_type &thread) {
821  auto agg = thread.league_rank();
822 
823  // size of the aggregate (number of DOFs in aggregate)
824  LO aggSize = aggRows(agg+1) - aggRows(agg);
825 
826  // R = norm
827  coarseNS(agg, 0) = one;
828 
829  // Q = localQR(:,0)/norm
830  for (decltype(aggSize) k = 0; k < aggSize; k++) {
831  LO localRow = agg2RowMapLO(aggRows(agg)+k);
832  SC localVal = fineNSRandom(agg2RowMapLO(aggRows(agg)+k),0);
833 
834  rows(localRow+1) = localRow+1;
835  cols(localRow) = agg;
836  vals(localRow) = localVal;
837 
838  }
839  });
840  }
841 
842  } else { // NSdim > 1
843  // FIXME_KOKKOS: This code branch is completely unoptimized.
844  // Work to do:
845  // - Optimize QR decomposition
846  // - Remove INVALID usage similarly to CoalesceDropFactory_kokkos by
847  // packing new values in the beginning of each row
848  // We do use auxilary view in this case, so keep a second rows view for
849  // counting nonzeros in rows
850 
851  // NOTE: the allocation (initialization) of these view takes noticeable time
852  size_t nnzEstimate = numRows * NSDim;
853  rows_type rowsAux("Ptent_aux_rows", numRows+1);
854  cols_type colsAux("Ptent_aux_cols", nnzEstimate);
855  vals_type valsAux("Ptent_aux_vals", nnzEstimate);
856  rows = rows_type("Ptent_rows", numRows+1);
857  {
858  // Stage 0: fill in views.
859  SubFactoryMonitor m2(*this, "Stage 0 (InitViews)", coarseLevel);
860 
861  // The main thing to notice is initialization of vals with INVALID. These
862  // values will later be used to compress the arrays
863  Kokkos::parallel_for("MueLu:TentativePF:BuildPuncoupled:for1", range_type(0, numRows+1),
864  KOKKOS_LAMBDA(const LO row) {
865  rowsAux(row) = row*NSDim;
866  });
867  Kokkos::parallel_for("MueLu:TentativePF:BuildUncoupled:for2", range_type(0, nnzEstimate),
868  KOKKOS_LAMBDA(const LO j) {
869  colsAux(j) = INVALID;
870  valsAux(j) = impl_ATS::zero();
871  });
872  }
873 
874  {
875  SubFactoryMonitor m2 = SubFactoryMonitor(*this, doQRStep ? "Stage 1 (LocalQR)" : "Stage 1 (Fill coarse nullspace and tentative P)", coarseLevel);
876  // Set up team policy with numAggregates teams and one thread per team.
877  // Each team handles a slice of the data associated with one aggregate
878  // and performs a local QR decomposition
879  const Kokkos::TeamPolicy<execution_space> policy(numAggregates,1); // numAggregates teams a 1 thread
880  LocalQRDecompFunctor<LocalOrdinal, GlobalOrdinal, Scalar, DeviceType, decltype(fineNSRandom),
881  decltype(aggDofSizes /*aggregate sizes in dofs*/), decltype(maxAggSize), decltype(agg2RowMapLO),
882  decltype(statusAtomic), decltype(rows), decltype(rowsAux), decltype(colsAux),
883  decltype(valsAux)>
884  localQRFunctor(fineNSRandom, coarseNS, aggDofSizes, maxAggSize, agg2RowMapLO, statusAtomic,
885  rows, rowsAux, colsAux, valsAux, doQRStep);
886  Kokkos::parallel_reduce("MueLu:TentativePF:BuildUncoupled:main_qr_loop", policy, localQRFunctor, nnz);
887  }
888 
889  typename status_type::HostMirror statusHost = Kokkos::create_mirror_view(status);
890  Kokkos::deep_copy(statusHost, status);
891  for (decltype(statusHost.size()) i = 0; i < statusHost.size(); i++)
892  if (statusHost(i)) {
893  std::ostringstream oss;
894  oss << "MueLu::TentativePFactory::MakeTentative: ";
895  switch(i) {
896  case 0: oss << "!goodMap is not implemented"; break;
897  case 1: oss << "fine level NS part has a zero column"; break;
898  }
899  throw Exceptions::RuntimeError(oss.str());
900  }
901 
902  // Compress the cols and vals by ignoring INVALID column entries that correspond
903  // to 0 in QR.
904 
905  // The real cols and vals are constructed using calculated (not estimated) nnz
906  cols = decltype(cols)("Ptent_cols", nnz);
907  vals = decltype(vals)("Ptent_vals", nnz);
908  {
909  // Stage 2: compress the arrays
910  SubFactoryMonitor m2(*this, "Stage 2 (CompressRows)", coarseLevel);
911 
912  Kokkos::parallel_scan("MueLu:TentativePF:Build:compress_rows", range_type(0,numRows+1),
913  KOKKOS_LAMBDA(const LO i, LO& upd, const bool& final) {
914  upd += rows(i);
915  if (final)
916  rows(i) = upd;
917  });
918  }
919 
920  {
921  SubFactoryMonitor m2(*this, "Stage 2 (CompressCols)", coarseLevel);
922 
923  // FIXME_KOKKOS: this can be spedup by moving correct cols and vals values
924  // to the beginning of rows. See CoalesceDropFactory_kokkos for
925  // example.
926  Kokkos::parallel_for("MueLu:TentativePF:Build:compress_cols_vals", range_type(0,numRows),
927  KOKKOS_LAMBDA(const LO i) {
928  LO rowStart = rows(i);
929 
930  size_t lnnz = 0;
931  for (auto j = rowsAux(i); j < rowsAux(i+1); j++)
932  if (colsAux(j) != INVALID) {
933  cols(rowStart+lnnz) = colsAux(j);
934  vals(rowStart+lnnz) = valsAux(j);
935  lnnz++;
936  }
937  });
938  }
939  }
940 
941  GetOStream(Runtime1) << "TentativePFactory : aggregates do not cross process boundaries" << std::endl;
942 
943  {
944  // Stage 3: construct Xpetra::Matrix
945  SubFactoryMonitor m2(*this, "Stage 3 (LocalMatrix+FillComplete)", coarseLevel);
946 
947  local_matrix_type lclMatrix = local_matrix_type("A", numRows, coarseMap->getNodeNumElements(), nnz, vals, rows, cols);
948 
949  // Managing labels & constants for ESFC
950  RCP<ParameterList> FCparams;
951  if (pL.isSublist("matrixmatrix: kernel params"))
952  FCparams = rcp(new ParameterList(pL.sublist("matrixmatrix: kernel params")));
953  else
954  FCparams = rcp(new ParameterList);
955 
956  // By default, we don't need global constants for TentativeP
957  FCparams->set("compute global constants", FCparams->get("compute global constants", false));
958  FCparams->set("Timer Label", std::string("MueLu::TentativeP-") + toString(levelID));
959 
960  auto PtentCrs = CrsMatrixFactory::Build(lclMatrix, rowMap, coarseMap, coarseMap, A->getDomainMap());
961  Ptentative = rcp(new CrsMatrixWrap(PtentCrs));
962  }
963  }
964 
965  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class DeviceType>
966  void TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::
967  BuildPcoupled(RCP<Matrix> /* A */, RCP<Aggregates_kokkos> /* aggregates */,
968  RCP<AmalgamationInfo_kokkos> /* amalgInfo */, RCP<MultiVector> /* fineNullspace */,
969  RCP<const Map> /* coarseMap */, RCP<Matrix>& /* Ptentative */,
970  RCP<MultiVector>& /* coarseNullspace */) const {
971  throw Exceptions::RuntimeError("MueLu: Construction of coupled tentative P is not implemented");
972  }
973 
974  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class DeviceType>
975  bool TentativePFactory_kokkos<Scalar,LocalOrdinal,GlobalOrdinal,Kokkos::Compat::KokkosDeviceWrapperNode<DeviceType>>::
976  isGoodMap(const Map& rowMap, const Map& colMap) const {
977  auto rowLocalMap = rowMap.getLocalMap();
978  auto colLocalMap = colMap.getLocalMap();
979 
980  const size_t numRows = rowLocalMap.getNodeNumElements();
981  const size_t numCols = colLocalMap.getNodeNumElements();
982 
983  if (numCols < numRows)
984  return false;
985 
986  size_t numDiff = 0;
987  Kokkos::parallel_reduce("MueLu:TentativePF:isGoodMap", range_type(0, numRows),
988  KOKKOS_LAMBDA(const LO i, size_t &diff) {
989  diff += (rowLocalMap.getGlobalElement(i) != colLocalMap.getGlobalElement(i));
990  }, numDiff);
991 
992  return (numDiff == 0);
993  }
994 
995 } //namespace MueLu
996 
997 #define MUELU_TENTATIVEPFACTORY_KOKKOS_SHORT
998 #endif // HAVE_MUELU_KOKKOS_REFACTOR
999 #endif // MUELU_TENTATIVEPFACTORY_KOKKOS_DEF_HPP
Important warning messages (one line)
MueLu::DefaultLocalOrdinal LocalOrdinal
void parallel_for(const ExecPolicy &policy, const FunctorType &functor, const std::string &str="", typename Impl::enable_if< Kokkos::Impl::is_execution_policy< ExecPolicy >::value >::type *=0)
std::string toString(const T &what)
Little helper function to convert non-string types to strings.
GlobalOrdinal GO
void parallel_reduce(const std::string &label, const PolicyType &policy, const FunctorType &functor, ReturnType &return_value, typename Impl::enable_if< Kokkos::Impl::is_execution_policy< PolicyType >::value >::type *=0)
#define TEUCHOS_TEST_FOR_EXCEPTION(throw_exception_test, Exception, msg)
Print more statistics.
KOKKOS_INLINE_FUNCTION Kokkos::complex< RealType > pow(const complex< RealType > &x, const RealType &e)
LocalOrdinal LO
static const NoFactory * get()
void deep_copy(const View< DT, DP...> &dst, typename ViewTraits< DT, DP...>::const_value_type &value, typename std::enable_if< std::is_same< typename ViewTraits< DT, DP...>::specialize, void >::value >::type *=0)
TEUCHOS_DEPRECATED RCP< T > rcp(T *p, Dealloc_T dealloc, bool owns_mem)
MueLu::DefaultScalar Scalar
MueLu::DefaultGlobalOrdinal GlobalOrdinal
static std::string PrintMatrixInfo(const Matrix &A, const std::string &msgTag, RCP< const Teuchos::ParameterList > params=Teuchos::null)
size_t global_size_t
KOKKOS_INLINE_FUNCTION Kokkos::complex< RealType > sqrt(const complex< RealType > &x)
KOKKOS_FORCEINLINE_FUNCTION constexpr pair< T1, T2 > make_pair(T1 x, T2 y)
Scalar SC
Description of what is happening (more verbose)
#define SET_VALID_ENTRY(name)